mRNA_Ecto-sp8_S_contig97698.31530.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig97698.31530.1
Unique NamemRNA_Ecto-sp8_S_contig97698.31530.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig97698.31530.1 vs. uniprot
Match: D8LCN8_ECTSI (Heat shock protein 70 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN8_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.180e-16
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 QHNPEKLGTVEDALARYKGREDILFQRLKKQYGKPIPA 114
            QHNPEKL TVEDALARYKGREDILFQRLKKQYGKPIPA
Sbjct:  725 QHNPEKLSTVEDALARYKGREDILFQRLKKQYGKPIPA 762
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BLAST of mRNA_Ecto-sp8_S_contig97698.31530.1 vs. uniprot
Match: A0A7S1V251_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V251_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.780e-6
Identity = 18/38 (47.37%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    1 QHNPEKLGTVEDALARYKGREDILFQRLKKQYGKPIPA 114
            ++NP+KLG+V+  L +Y+GRED+LF+++  +Y KP P 
Sbjct:   31 RYNPDKLGSVDGLLDKYRGREDVLFKKIDNKYNKPQPT 68
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BLAST of mRNA_Ecto-sp8_S_contig97698.31530.1 vs. uniprot
Match: A0A7S2SLN9_9STRA (Conserved oligomeric Golgi complex subunit 3 n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SLN9_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 1.590e-5
Identity = 20/34 (58.82%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:    7 NPEKLGTVEDALARYKGREDILFQRLKKQYGKPI 108
            NPEKL  V+  LA++ GRE++LFQ+L K+YG PI
Sbjct:  518 NPEKLDMVDSTLAKFTGREEVLFQKLSKKYGVPI 551
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BLAST of mRNA_Ecto-sp8_S_contig97698.31530.1 vs. uniprot
Match: A0A7S2CU77_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2CU77_9EUKA)

HSP 1 Score: 47.4 bits (111), Expect = 2.800e-5
Identity = 18/33 (54.55%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:   10 PEKLGTVEDALARYKGREDILFQRLKKQYGKPI 108
            PEKLG+++D LA+Y+GRE  LF++L+K+YG+ +
Sbjct:  118 PEKLGSMDDTLAKYEGREQALFRQLQKKYGQKV 150
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BLAST of mRNA_Ecto-sp8_S_contig97698.31530.1 vs. uniprot
Match: A0A0N7L4X7_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L4X7_PLAHL)

HSP 1 Score: 48.1 bits (113), Expect = 2.970e-5
Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 1 
Query:    1 QHNPEKLGTVEDALARYKGREDILFQRLKKQYGKPIPA 114
            Q+NP KL  V+  LA+YKGRED LFQ L+++Y K  P 
Sbjct:  963 QYNPSKLSAVDTTLAKYKGREDQLFQMLEQKYVKKTPV 1000
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BLAST of mRNA_Ecto-sp8_S_contig97698.31530.1 vs. uniprot
Match: A0A485KH89_9STRA (Aste57867_5091 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KH89_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 5.550e-5
Identity = 19/35 (54.29%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:    1 QHNPEKLGTVEDALARYKGREDILFQRLKKQYGKP 105
            QHNP+KL  V+  LA+YKG+E+ L Q+L+ +Y KP
Sbjct: 2439 QHNPDKLSEVDTVLAKYKGKEEELLQKLEAKYNKP 2473
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BLAST of mRNA_Ecto-sp8_S_contig97698.31530.1 vs. uniprot
Match: F0WAQ6_9STRA (Nuclear pore complex protein putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WAQ6_9STRA)

HSP 1 Score: 47.0 bits (110), Expect = 7.600e-5
Identity = 19/33 (57.58%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:    1 QHNPEKLGTVEDALARYKGREDILFQRLKKQYG 99
            +HNPEKL  V+  LA+Y GRE +LF+ L+K+YG
Sbjct: 1736 KHNPEKLNDVDKTLAKYAGRETVLFELLEKKYG 1768
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig97698.31530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LCN8_ECTSI1.180e-1697.37Heat shock protein 70 n=1 Tax=Ectocarpus siliculos... [more]
A0A7S1V251_9STRA1.780e-647.37Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A7S2SLN9_9STRA1.590e-558.82Conserved oligomeric Golgi complex subunit 3 n=2 T... [more]
A0A7S2CU77_9EUKA2.800e-554.55Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A0N7L4X7_PLAHL2.970e-555.26Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
A0A485KH89_9STRA5.550e-554.29Aste57867_5091 protein n=1 Tax=Aphanomyces stellat... [more]
F0WAQ6_9STRA7.600e-557.58Nuclear pore complex protein putative n=1 Tax=Albu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig97698contigEcto-sp8_S_contig97698:214..330 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size117
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size117
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145343.0440023-CDS-Ecto-sp8_S_contig97698:213..3301681145343.0440023-CDS-Ecto-sp8_S_contig97698:213..330Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig97698 214..330 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig97698.31530.1prot_Ecto-sp8_S_contig97698.31530.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig97698 214..330 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig97698.31530.1

>prot_Ecto-sp8_S_contig97698.31530.1 ID=prot_Ecto-sp8_S_contig97698.31530.1|Name=mRNA_Ecto-sp8_S_contig97698.31530.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=39bp
QHNPEKLGTVEDALARYKGREDILFQRLKKQYGKPIPA*
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mRNA from alignment at Ecto-sp8_S_contig97698:214..330+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig97698.31530.1 ID=mRNA_Ecto-sp8_S_contig97698.31530.1|Name=mRNA_Ecto-sp8_S_contig97698.31530.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=117bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97698:214..330+ (Ectocarpus species8 EcLAC_412)
CAGCACAATCCTGAAAAGCTTGGCACCGTGGAAGACGCCCTGGCTCGGTA
CAAGGGACGTGAGGACATCTTGTTCCAAAGGCTCAAGAAGCAGTACGGAA
AGCCTATCCCAGCCTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig97698:214..330+

>mRNA_Ecto-sp8_S_contig97698.31530.1 ID=mRNA_Ecto-sp8_S_contig97698.31530.1|Name=mRNA_Ecto-sp8_S_contig97698.31530.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=117bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97698:214..330+ (Ectocarpus species8 EcLAC_412)
CAGCACAATCCTGAAAAGCTTGGCACCGTGGAAGACGCCCTGGCTCGGTA
CAAGGGACGTGAGGACATCTTGTTCCAAAGGCTCAAGAAGCAGTACGGAA
AGCCTATCCCAGCCTAG
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