mRNA_Ecto-sp8_S_contig97674.31528.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig97674.31528.1
Unique NamemRNA_Ecto-sp8_S_contig97674.31528.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig97674.31528.1 vs. uniprot
Match: A0A6H5L0Y9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Y9_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 2.450e-32
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 1
Query:    1 ARRLFELGVLADPTHGPLYNAYGSMEAKLGNVEHARSVYKRGIAARCSGAVHVWQGFGKL 180
            ARRLFELG+LADPTHGPLYNAYGSMEAKLGNVEHARSVYKRGIAARCSGAVHVWQGFGKL
Sbjct:  652 ARRLFELGILADPTHGPLYNAYGSMEAKLGNVEHARSVYKRGIAARCSGAVHVWQGFGKL 711          
BLAST of mRNA_Ecto-sp8_S_contig97674.31528.1 vs. uniprot
Match: D7G1I2_ECTSI (PsbB mRNA maturation factor Mbb1, chloroplast n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I2_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 4.270e-29
Identity = 54/56 (96.43%), Postives = 56/56 (100.00%), Query Frame = 1
Query:    1 ARRLFELGVLADPTHGPLYNAYGSMEAKLGNVEHARSVYKRGIAARCSGAVHVWQG 168
            ARRLFELG+LADPTHGPLYNAYGSMEAKLGNVEHAR+VYKRGIAARCSGAVHVWQG
Sbjct:  573 ARRLFELGILADPTHGPLYNAYGSMEAKLGNVEHARNVYKRGIAARCSGAVHVWQG 628          
BLAST of mRNA_Ecto-sp8_S_contig97674.31528.1 vs. uniprot
Match: A0A7S2DH37_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DH37_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.790e-18
Identity = 39/60 (65.00%), Postives = 47/60 (78.33%), Query Frame = 1
Query:    1 ARRLFELGVLADPTHGPLYNAYGSMEAKLGNVEHARSVYKRGIAARCSGAVHVWQGFGKL 180
            ARRLFELG+ ADP+HGPLYNAYG+MEA+  N + AR V +RGIAA+C+   HVW G G L
Sbjct:  323 ARRLFELGIKADPSHGPLYNAYGAMEARHRNFQEARLVLERGIAAKCTDMAHVWHGLGTL 382          
BLAST of mRNA_Ecto-sp8_S_contig97674.31528.1 vs. uniprot
Match: A0A835Z4V8_9STRA (PsbB mRNA maturation factor Mbb1, chloroplast n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4V8_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 2.190e-16
Identity = 35/56 (62.50%), Postives = 45/56 (80.36%), Query Frame = 1
Query:    1 ARRLFELGVLADPTHGPLYNAYGSMEAKLGNVEHARSVYKRGIAARCSGAVHVWQG 168
            ARRLFELG+ ADP HGPLYNAYG+ EA+ G+V+ AR+V++RG+AA C+    VW G
Sbjct:  445 ARRLFELGIRADPKHGPLYNAYGATEARWGDVDAARAVFRRGVAAHCTDMASVWHG 500          
BLAST of mRNA_Ecto-sp8_S_contig97674.31528.1 vs. uniprot
Match: W7TSL7_9STRA (PsbB mRNA maturation factor n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSL7_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 6.510e-12
Identity = 31/60 (51.67%), Postives = 41/60 (68.33%), Query Frame = 1
Query:    1 ARRLFELGVLADPTHGPLYNAYGSMEAKLGNVEHARSVYKRGIAARCSGAVHVWQGFGKL 180
            AR+LF LG+ ADP+HGPLYNAYG ME K+GN+  A+ V++ G+ A C     V  G+  L
Sbjct:  511 ARKLFMLGMAADPSHGPLYNAYGRMEEKIGNLTGAQEVFRMGVEAHCPDMPSVLNGWAML 570          
BLAST of mRNA_Ecto-sp8_S_contig97674.31528.1 vs. uniprot
Match: A0A6S8QV48_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8QV48_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 4.250e-11
Identity = 27/45 (60.00%), Postives = 35/45 (77.78%), Query Frame = 1
Query:    7 RLFELGVLADPTHGPLYNAYGSMEAKLGNVEHARSVYKRGIAARC 141
            RLF+  +L DP HGP+YNAYG+ME K+GNVE AR +Y+ G+ A C
Sbjct:  562 RLFQEALLLDPRHGPVYNAYGNMELKMGNVEEARRIYQNGVYANC 606          
BLAST of mRNA_Ecto-sp8_S_contig97674.31528.1 vs. uniprot
Match: A0A7S0RGS6_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RGS6_9CHLO)

HSP 1 Score: 51.6 bits (122), Expect = 4.470e-6
Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 1
Query:    1 ARRLFELGVLADPTHGPLYNAYGSMEAKLGNVEHARSVYKRGIAARCSGAVHVW 162
            AR LFE G+ ADP H  L+ A+G MEA LGN++ AR +Y+ G+ A       VW
Sbjct:  156 ARGLFEAGLRADPGHLHLWQAWGVMEASLGNLDRARQLYQEGVWADPRSRNTVW 209          
BLAST of mRNA_Ecto-sp8_S_contig97674.31528.1 vs. uniprot
Match: A0A1Z5JWF6_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JWF6_FISSO)

HSP 1 Score: 51.6 bits (122), Expect = 4.530e-6
Identity = 25/60 (41.67%), Postives = 37/60 (61.67%), Query Frame = 1
Query:    4 RRLFELGVLADPTHGPLYNAYGSMEAKLGNVEH-ARSVYKRGIAARCSGAVHVWQGFGKL 180
            ++LFE  +L DP H P YNAY     +  + E  ARS+++RG+ A+C  A  ++ GF KL
Sbjct:  439 KQLFEEALLIDPRHAPAYNAYARCVFEQEDDERQARSIFERGVRAKCPDAASLYHGFAKL 498          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig97674.31528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5L0Y9_9PHAE2.450e-3298.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1I2_ECTSI4.270e-2996.43PsbB mRNA maturation factor Mbb1, chloroplast n=1 ... [more]
A0A7S2DH37_9STRA2.790e-1865.00Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835Z4V8_9STRA2.190e-1662.50PsbB mRNA maturation factor Mbb1, chloroplast n=1 ... [more]
W7TSL7_9STRA6.510e-1251.67PsbB mRNA maturation factor n=2 Tax=Monodopsidacea... [more]
A0A6S8QV48_9STRA4.250e-1160.00Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S0RGS6_9CHLO4.470e-648.15Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
A0A1Z5JWF6_FISSO4.530e-641.67Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig97674contigEcto-sp8_S_contig97674:2..517 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score117.1
Seed ortholog evalue2.9e-24
Seed eggNOG ortholog2880.D7G1I2
Preferred nameTTC6
Model size180
KEGG rclassRC00002,RC00078
KEGG koko:K00951,ko:K12869
KEGG ReactionR00429
KEGG Pathwayko00230,ko03040,map00230,map03040
KEGG ModuleM00355
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.cellular component assembly
EggNOG OGsCOG0457@1,KOG1124@2759
EC2.7.6.5
Cds size180
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03036,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145342.877881-CDS-Ecto-sp8_S_contig97674:1..1131681145342.877881-CDS-Ecto-sp8_S_contig97674:1..113Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig97674 2..113 -
1681145342.8962185-CDS-Ecto-sp8_S_contig97674:449..5171681145342.8962185-CDS-Ecto-sp8_S_contig97674:449..517Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig97674 450..517 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig97674.31528.1prot_Ecto-sp8_S_contig97674.31528.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig97674 2..517 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig97674.31528.1

>prot_Ecto-sp8_S_contig97674.31528.1 ID=prot_Ecto-sp8_S_contig97674.31528.1|Name=mRNA_Ecto-sp8_S_contig97674.31528.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=60bp
ARRLFELGVLADPTHGPLYNAYGSMEAKLGNVEHARSVYKRGIAARCSGA
VHVWQGFGKL
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mRNA from alignment at Ecto-sp8_S_contig97674:2..517-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig97674.31528.1 ID=mRNA_Ecto-sp8_S_contig97674.31528.1|Name=mRNA_Ecto-sp8_S_contig97674.31528.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=516bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97674:2..517- (Ectocarpus species8 EcLAC_412)
GCAAGGAGGCTTTTCGAGCTGGGGGTCTTGGCGGACCCGACCCACGGACC GCTCTACAATGCCTACGGGTGAGACATGGAAGTGGAACGAACGACATTTG TCGAACGACGCCTGTCAGACTGAAAACGCAGCACACCTTGTACCTTGCAA GCGAAGTGGGCATCGTTTTTTCTTTTTTCGGGGGGGAGGGGGGGAGAAGA CGTACCACAAGCATAGCGCGCCATGATGACCGAGAGCAGTTCTCGTCTTA CGCACGCGGGGTCAGCGCTGTCCCACCCCTCCATGATCGATCTCCCTGCT GTGGTTTCCGTTGTGACCGGCCCCACCATACGCATTGTTGCGTTTTTACG GGGTTTTTTCGGTTGCCGTTGGGTGGCTCGACTTTTTTTATTCGGGATTT CCAGCTCCATGGAGGCCAAGCTGGGCAACGTTGAGCACGCGCGCAGCGTC TACAAGCGGGGCATCGCGGCTCGCTGCAGCGGGGCCGTCCACGTTTGGCA GGGCTTCGGGAAGCTT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig97674:2..517-

>mRNA_Ecto-sp8_S_contig97674.31528.1 ID=mRNA_Ecto-sp8_S_contig97674.31528.1|Name=mRNA_Ecto-sp8_S_contig97674.31528.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=180bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97674:2..517- (Ectocarpus species8 EcLAC_412)
GCAAGGAGGCTTTTCGAGCTGGGGGTCTTGGCGGACCCGACCCACGGACC
GCTCTACAATGCCTACGGCTCCATGGAGGCCAAGCTGGGCAACGTTGAGC
ACGCGCGCAGCGTCTACAAGCGGGGCATCGCGGCTCGCTGCAGCGGGGCC
GTCCACGTTTGGCAGGGCTTCGGGAAGCTT
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