mRNA_Ecto-sp8_S_contig97627.31523.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig97627.31523.1
Unique NamemRNA_Ecto-sp8_S_contig97627.31523.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig97627.31523.1 vs. uniprot
Match: D7FPP5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPP5_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 2.540e-5
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = -3 
Query:    2 KQPRFSLLKTVDMQGLNLGAMGSTP 76
            +QPRFSLLKTVDMQGLNLGAMGSTP
Sbjct:   80 QQPRFSLLKTVDMQGLNLGAMGSTP 104
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BLAST of mRNA_Ecto-sp8_S_contig97627.31523.1 vs. uniprot
Match: A0A6H5LCS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCS2_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 2.780e-5
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = -3 
Query:    2 KQPRFSLLKTVDMQGLNLGAMGSTP 76
            +QPRFSLLKTVDMQGLNLGAMGSTP
Sbjct:  298 QQPRFSLLKTVDMQGLNLGAMGSTP 322
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig97627.31523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPP5_ECTSI2.540e-596.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LCS2_9PHAE2.780e-596.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig97627contigEcto-sp8_S_contig97627:151..570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size420
Hectar predicted targeting categoryother localisation
Exons1
Cds size333
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145342.5382895-UTR-Ecto-sp8_S_contig97627:150..1641681145342.5382895-UTR-Ecto-sp8_S_contig97627:150..164Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig97627 151..164 +
1681145342.5639687-UTR-Ecto-sp8_S_contig97627:497..5701681145342.5639687-UTR-Ecto-sp8_S_contig97627:497..570Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig97627 498..570 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145342.5515342-CDS-Ecto-sp8_S_contig97627:164..4971681145342.5515342-CDS-Ecto-sp8_S_contig97627:164..497Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig97627 165..497 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig97627.31523.1prot_Ecto-sp8_S_contig97627.31523.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig97627 165..497 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig97627.31523.1

>prot_Ecto-sp8_S_contig97627.31523.1 ID=prot_Ecto-sp8_S_contig97627.31523.1|Name=mRNA_Ecto-sp8_S_contig97627.31523.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=111bp
MAPRLRPCMSTVFSSEKRGCFFFNQGGIERRVPGNSHQSKINGVGTCYLP
HATAAVALPGDEEQHCGRRQKLGRFDGGKDKEKYDDTTLLSTVCVPQLRT
SHILPVPPRK*
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mRNA from alignment at Ecto-sp8_S_contig97627:151..570+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig97627.31523.1 ID=mRNA_Ecto-sp8_S_contig97627.31523.1|Name=mRNA_Ecto-sp8_S_contig97627.31523.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=420bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97627:151..570+ (Ectocarpus species8 EcLAC_412)
CGGGCGTTGATCCCATGGCTCCAAGATTGAGGCCTTGCATGTCCACCGTT
TTCAGCAGCGAGAAACGCGGCTGTTTTTTTTTTAACCAGGGTGGTATTGA
AAGACGGGTACCGGGTAATTCGCATCAGAGTAAAATCAATGGGGTTGGGA
CTTGTTATCTGCCGCATGCCACAGCAGCAGTGGCATTACCGGGAGACGAA
GAACAGCATTGCGGTCGGCGACAAAAGTTGGGGCGTTTTGATGGAGGAAA
GGACAAAGAAAAATACGACGATACAACGCTTCTCAGCACAGTGTGCGTGC
CCCAACTCCGCACGTCACACATATTGCCAGTACCCCCACGCAAGTAGAGC
GCCATATCGTACCTGCTGCACAACGCTGCGTGCTAAAAAAAAGAGAGGCT
GCCGGCTCAGAATGGACTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig97627:151..570+

>mRNA_Ecto-sp8_S_contig97627.31523.1 ID=mRNA_Ecto-sp8_S_contig97627.31523.1|Name=mRNA_Ecto-sp8_S_contig97627.31523.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=333bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97627:151..570+ (Ectocarpus species8 EcLAC_412)
ATGGCTCCAAGATTGAGGCCTTGCATGTCCACCGTTTTCAGCAGCGAGAA
ACGCGGCTGTTTTTTTTTTAACCAGGGTGGTATTGAAAGACGGGTACCGG
GTAATTCGCATCAGAGTAAAATCAATGGGGTTGGGACTTGTTATCTGCCG
CATGCCACAGCAGCAGTGGCATTACCGGGAGACGAAGAACAGCATTGCGG
TCGGCGACAAAAGTTGGGGCGTTTTGATGGAGGAAAGGACAAAGAAAAAT
ACGACGATACAACGCTTCTCAGCACAGTGTGCGTGCCCCAACTCCGCACG
TCACACATATTGCCAGTACCCCCACGCAAGTAG
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