mRNA_Ecto-sp8_S_contig9762.31522.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9762.31522.1
Unique NamemRNA_Ecto-sp8_S_contig9762.31522.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9762.31522.1 vs. uniprot
Match: D8LPJ9_ECTSI (Ribonucleoside-diphosphate reductase n=2 Tax=root TaxID=1 RepID=D8LPJ9_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 8.060e-42
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 1 
Query:    1 MYITKRDGRKENVLFDKISARIKKLCYGLDSKYVDHVAIAQKVISGVYAGVTTTELDTLAAETAAYMAISHPDYSLLAGR 240
            MYITKRDGRKENVLFDKISARIKKLCYGLDS+YVDHVAIAQKVISGVYAGVTTTELDTLAAETAAYMAISHPDYSLLAGR
Sbjct:    4 MYITKRDGRKENVLFDKISARIKKLCYGLDSRYVDHVAIAQKVISGVYAGVTTTELDTLAAETAAYMAISHPDYSLLAGR 83
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9762.31522.1 vs. uniprot
Match: A0A8H7NLK8_BIOOC (ATP-cone domain-containing protein n=1 Tax=Bionectria ochroleuca TaxID=29856 RepID=A0A8H7NLK8_BIOOC)

HSP 1 Score: 117 bits (292), Expect = 5.400e-31
Identity = 56/80 (70.00%), Postives = 69/80 (86.25%), Query Frame = 1 
Query:    1 MYITKRDGRKENVLFDKISARIKKLCYGLDSKYVDHVAIAQKVISGVYAGVTTTELDTLAAETAAYMAISHPDYSLLAGR 240
            MY+ KRDGR+E V FDKI+AR+ +LCYGLD+++VD VAI QKVISGVY GVTT +LD LAAETAAYM ++HPDY++LA R
Sbjct:    1 MYVRKRDGRQERVQFDKITARVSRLCYGLDTEHVDPVAITQKVISGVYGGVTTIQLDDLAAETAAYMTVTHPDYAILAAR 80
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9762.31522.1 vs. uniprot
Match: A0A8H7VSW9_9FUNG (Ribonucleoside-diphosphate reductase n=2 Tax=Mucoraceae TaxID=34489 RepID=A0A8H7VSW9_9FUNG)

HSP 1 Score: 120 bits (302), Expect = 4.410e-30
Identity = 59/80 (73.75%), Postives = 67/80 (83.75%), Query Frame = 1 
Query:    1 MYITKRDGRKENVLFDKISARIKKLCYGLDSKYVDHVAIAQKVISGVYAGVTTTELDTLAAETAAYMAISHPDYSLLAGR 240
            MY+ KRDGRKE V FDKI+ARI KLCYGLD+ YVD V + QKVISGVY G+TT  LDTLAAETAAYM I+HPDY++LA R
Sbjct:    3 MYVVKRDGRKETVAFDKITARINKLCYGLDTNYVDPVTVTQKVISGVYQGITTQMLDTLAAETAAYMTIAHPDYAILAAR 82
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9762.31522.1 vs. uniprot
Match: A0A1Y1Y5U6_9FUNG (Ribonucleoside-diphosphate reductase n=2 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y5U6_9FUNG)

HSP 1 Score: 119 bits (297), Expect = 2.080e-29
Identity = 58/80 (72.50%), Postives = 66/80 (82.50%), Query Frame = 1 
Query:    1 MYITKRDGRKENVLFDKISARIKKLCYGLDSKYVDHVAIAQKVISGVYAGVTTTELDTLAAETAAYMAISHPDYSLLAGR 240
            MY+ KRDGR+E V FDKI+AR+ KLCYGLD+ YVD  A+AQ+VISGVY GVTT ELD LAAETAAYM   HPDY+LLA R
Sbjct:    3 MYVKKRDGRQERVAFDKITARVNKLCYGLDTNYVDSAAVAQRVISGVYEGVTTQELDNLAAETAAYMTTKHPDYALLAAR 82
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9762.31522.1 vs. uniprot
Match: A0A167L8E4_PHYB8 (Ribonucleoside-diphosphate reductase n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A167L8E4_PHYB8)

HSP 1 Score: 119 bits (297), Expect = 2.080e-29
Identity = 58/80 (72.50%), Postives = 67/80 (83.75%), Query Frame = 1 
Query:    1 MYITKRDGRKENVLFDKISARIKKLCYGLDSKYVDHVAIAQKVISGVYAGVTTTELDTLAAETAAYMAISHPDYSLLAGR 240
            M++ KRDGR+ENV FDKI+ARI KLCYGLD  Y+D  +IAQKVISGVY GVTT ELD LAAETAAYM  +HPDY++LA R
Sbjct:    1 MFVYKRDGRRENVAFDKITARINKLCYGLDMNYIDPTSIAQKVISGVYQGVTTVELDNLAAETAAYMTTAHPDYAILAAR 80
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9762.31522.1 vs. uniprot
Match: A0A8H7ETC0_9FUNG (Ribonucleoside-diphosphate reductase n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7ETC0_9FUNG)

HSP 1 Score: 119 bits (297), Expect = 2.090e-29
Identity = 59/80 (73.75%), Postives = 66/80 (82.50%), Query Frame = 1 
Query:    1 MYITKRDGRKENVLFDKISARIKKLCYGLDSKYVDHVAIAQKVISGVYAGVTTTELDTLAAETAAYMAISHPDYSLLAGR 240
            M++ KRDGR+E V FDKI+ARI KLCYGLD  YVD VAI QKVISGVY GVTT ELD LAAETAAYM  +HPDY++LA R
Sbjct:    3 MFVVKRDGRRERVAFDKITARINKLCYGLDMNYVDPVAITQKVISGVYQGVTTVELDNLAAETAAYMTTAHPDYAILAAR 82
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9762.31522.1 vs. uniprot
Match: A0A5J5EY29_9PEZI (Ribonucleoside-diphosphate reductase n=1 Tax=Sphaerosporella brunnea TaxID=1250544 RepID=A0A5J5EY29_9PEZI)

HSP 1 Score: 118 bits (296), Expect = 2.840e-29
Identity = 57/80 (71.25%), Postives = 68/80 (85.00%), Query Frame = 1 
Query:    1 MYITKRDGRKENVLFDKISARIKKLCYGLDSKYVDHVAIAQKVISGVYAGVTTTELDTLAAETAAYMAISHPDYSLLAGR 240
            MY+ KRDGRKE V FDKI+AR+ +LCYGLDS++VD  +I QKVISGVY GVTT ELD LAAETAAYM ++HPDY++LA R
Sbjct:    1 MYVVKRDGRKERVQFDKITARVSRLCYGLDSEHVDAASITQKVISGVYQGVTTIELDNLAAETAAYMTVTHPDYAILAAR 80
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9762.31522.1 vs. uniprot
Match: A0A132B2I9_9HELO (Ribonucleoside-diphosphate reductase n=5 Tax=Helotiales TaxID=5178 RepID=A0A132B2I9_9HELO)

HSP 1 Score: 118 bits (295), Expect = 3.920e-29
Identity = 57/80 (71.25%), Postives = 68/80 (85.00%), Query Frame = 1 
Query:    1 MYITKRDGRKENVLFDKISARIKKLCYGLDSKYVDHVAIAQKVISGVYAGVTTTELDTLAAETAAYMAISHPDYSLLAGR 240
            MY+ KRDGRKE V FDKI+AR+ +LCYGLD+++VD  AI QKVISGVY GVTT ELD LAAETAAYM ++HPDY++LA R
Sbjct:    1 MYVWKRDGRKERVQFDKITARVSRLCYGLDAEHVDAAAITQKVISGVYQGVTTVELDNLAAETAAYMTVTHPDYAILAAR 80
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9762.31522.1 vs. uniprot
Match: A0A2T3BCK6_AMORE (Ribonucleoside-diphosphate reductase n=1 Tax=Amorphotheca resinae ATCC 22711 TaxID=857342 RepID=A0A2T3BCK6_AMORE)

HSP 1 Score: 118 bits (295), Expect = 3.920e-29
Identity = 57/80 (71.25%), Postives = 68/80 (85.00%), Query Frame = 1 
Query:    1 MYITKRDGRKENVLFDKISARIKKLCYGLDSKYVDHVAIAQKVISGVYAGVTTTELDTLAAETAAYMAISHPDYSLLAGR 240
            MY+ KRDGRKE V FDKI+AR+ +LCYGLD+++VD  AI QKVISGVY GVTT ELD LAAETAAYM ++HPDY++LA R
Sbjct:    1 MYVWKRDGRKERVQFDKITARVSRLCYGLDAEHVDAAAITQKVISGVYQGVTTVELDNLAAETAAYMTVTHPDYAILAAR 80
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9762.31522.1 vs. uniprot
Match: A0A3E2GRW6_SCYLI (Ribonucleoside-diphosphate reductase (Fragment) n=1 Tax=Scytalidium lignicola TaxID=5539 RepID=A0A3E2GRW6_SCYLI)

HSP 1 Score: 118 bits (295), Expect = 3.920e-29
Identity = 57/80 (71.25%), Postives = 68/80 (85.00%), Query Frame = 1 
Query:    1 MYITKRDGRKENVLFDKISARIKKLCYGLDSKYVDHVAIAQKVISGVYAGVTTTELDTLAAETAAYMAISHPDYSLLAGR 240
            MY+ KRDGRKE V FDKI+AR+ +LCYGLD+++VD  AI QKVISGVY GVTT ELD LAAETAAYM ++HPDY++LA R
Sbjct:    1 MYVFKRDGRKERVQFDKITARVSRLCYGLDAEHVDAAAITQKVISGVYQGVTTVELDNLAAETAAYMTVTHPDYAILAAR 80
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9762.31522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPJ9_ECTSI8.060e-4298.75Ribonucleoside-diphosphate reductase n=2 Tax=root ... [more]
A0A8H7NLK8_BIOOC5.400e-3170.00ATP-cone domain-containing protein n=1 Tax=Bionect... [more]
A0A8H7VSW9_9FUNG4.410e-3073.75Ribonucleoside-diphosphate reductase n=2 Tax=Mucor... [more]
A0A1Y1Y5U6_9FUNG2.080e-2972.50Ribonucleoside-diphosphate reductase n=2 Tax=Basid... [more]
A0A167L8E4_PHYB82.080e-2972.50Ribonucleoside-diphosphate reductase n=1 Tax=Phyco... [more]
A0A8H7ETC0_9FUNG2.090e-2973.75Ribonucleoside-diphosphate reductase n=1 Tax=Apoph... [more]
A0A5J5EY29_9PEZI2.840e-2971.25Ribonucleoside-diphosphate reductase n=1 Tax=Sphae... [more]
A0A132B2I9_9HELO3.920e-2971.25Ribonucleoside-diphosphate reductase n=5 Tax=Helot... [more]
A0A2T3BCK6_AMORE3.920e-2971.25Ribonucleoside-diphosphate reductase n=1 Tax=Amorp... [more]
A0A3E2GRW6_SCYLI3.920e-2971.25Ribonucleoside-diphosphate reductase (Fragment) n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9762contigEcto-sp8_S_contig9762:6374..6613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score155.6
Seed ortholog evalue9.7e-36
Seed eggNOG ortholog2880.D8LPJ9
Preferred nameRNR1
Model size240
KEGG rclassRC00613,RC01003
KEGG koko:K10807
KEGG ReactionR02017,R02019,R02024,R08363,R08364,R11893
KEGG Pathwayko00230,ko00240,ko00480,ko00983,ko01100,map00230,map00240,map00480,map00983,map01100
KEGG ModuleM00053
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004550,GO:0004748,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0005971,GO:0006139,GO:0006165,GO:0006213,GO:0006220,GO:0006221,GO:0006235,GO:0006240,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009185,GO:0009186,GO:0009189,GO:0009193,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009218,GO:0009219,GO:0009221,GO:0009259,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016491,GO:0016725,GO:0016728,GO:0016740,GO:0016772,GO:0016776,GO:0017076,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0019693,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046062,GO:0046075,GO:0046131,GO:0046385,GO:0046483,GO:0046704,GO:0046939,GO:0051063,GO:0055086,GO:0055114,GO:0061731,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1902494,GO:1990204
Exons1
EggNOG free text desc.ribonucleoside-diphosphate reductase activity
EggNOG OGsCOG0209@1,KOG1112@2759
EC1.17.4.1
Cds size240
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145342.5044327-CDS-Ecto-sp8_S_contig9762:6373..66131681145342.5044327-CDS-Ecto-sp8_S_contig9762:6373..6613Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9762 6374..6613 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9762.31522.1prot_Ecto-sp8_S_contig9762.31522.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9762 6374..6613 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9762.31522.1

>prot_Ecto-sp8_S_contig9762.31522.1 ID=prot_Ecto-sp8_S_contig9762.31522.1|Name=mRNA_Ecto-sp8_S_contig9762.31522.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=80bp
MYITKRDGRKENVLFDKISARIKKLCYGLDSKYVDHVAIAQKVISGVYAG
VTTTELDTLAAETAAYMAISHPDYSLLAGR
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mRNA from alignment at Ecto-sp8_S_contig9762:6374..6613+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9762.31522.1 ID=mRNA_Ecto-sp8_S_contig9762.31522.1|Name=mRNA_Ecto-sp8_S_contig9762.31522.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=240bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9762:6374..6613+ (Ectocarpus species8 EcLAC_412)
ATGTACATCACCAAGCGGGACGGGCGCAAAGAAAACGTTCTCTTCGACAA
AATCTCGGCGCGCATCAAGAAGCTCTGTTATGGTCTGGACTCCAAATACG
TCGATCACGTGGCCATCGCCCAGAAAGTCATCTCGGGCGTCTACGCCGGA
GTAACCACTACAGAATTGGACACGTTGGCTGCGGAGACGGCGGCGTACAT
GGCGATTTCACACCCCGACTACTCGCTGCTGGCCGGGCGG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9762:6374..6613+

>mRNA_Ecto-sp8_S_contig9762.31522.1 ID=mRNA_Ecto-sp8_S_contig9762.31522.1|Name=mRNA_Ecto-sp8_S_contig9762.31522.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=240bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9762:6374..6613+ (Ectocarpus species8 EcLAC_412)
ATGTACATCACCAAGCGGGACGGGCGCAAAGAAAACGTTCTCTTCGACAA
AATCTCGGCGCGCATCAAGAAGCTCTGTTATGGTCTGGACTCCAAATACG
TCGATCACGTGGCCATCGCCCAGAAAGTCATCTCGGGCGTCTACGCCGGA
GTAACCACTACAGAATTGGACACGTTGGCTGCGGAGACGGCGGCGTACAT
GGCGATTTCACACCCCGACTACTCGCTGCTGGCCGGGCGG
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