mRNA_Ecto-sp8_S_contig9762.31518.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9762.31518.1
Unique NamemRNA_Ecto-sp8_S_contig9762.31518.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9762.31518.1 vs. uniprot
Match: D8LPJ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPJ4_ECTSI)

HSP 1 Score: 550 bits (1418), Expect = 8.860e-196
Identity = 282/315 (89.52%), Postives = 293/315 (93.02%), Query Frame = 1 
Query:    1 MVSTETIEDPRTIGMLNKIGFRNLGYLGALVQKWENMADEEVSFTEWVLDNGFIESTTKFADATRQQSKVDSGNMKYLKKELEATREDLSETKKDVARLVSVNKDLYDKIDKMLHPHAIAVNGIRDTLIAFNKENPAAVANGGGVTFGTGHVKINSVDRLEEFLATVHARKLGLPSNIITTLRVFVLEGRLVTLSDEYHGGVGYSFLWKKXXXXXXXXXXXXKSWGVEGWASEQAKKCDPRLGIDPATGVNYVDPETGKMWIYPDLVKQKSGCESKKRGVSETTPESVAKKMMKSGEELEKYGETTTPDDGGGSS 945
            MVSTETIEDP+TIGMLNKIG+RNLGYLGALVQKWENMADEEVSFTEWVLDNGFIESTTKFADA RQQSKVDSGNMKYLKKELE TRE+LSETKKDVARLVSVN+DLYDKIDKMLHPHAIAVN IRDTLIAFNKENPAAVANG GVTFGTGHVKINSVDRL EFLATVHARKLGLPSNI+TTLRVFVLEG+LVTLSDEYHGGVGYSFLWKK            KSWGVEGWASEQAKKCDPRLGIDPATGVNYVDPETGKMWIYPDL+KQ+SG +SKKRGVSETTPESVAKKM KSGEE EK+GE + PDDGGGSS
Sbjct:    1 MVSTETIEDPKTIGMLNKIGYRNLGYLGALVQKWENMADEEVSFTEWVLDNGFIESTTKFADAARQQSKVDSGNMKYLKKELEETREELSETKKDVARLVSVNRDLYDKIDKMLHPHAIAVNDIRDTLIAFNKENPAAVANGSGVTFGTGHVKINSVDRLGEFLATVHARKLGLPSNILTTLRVFVLEGKLVTLSDEYHGGVGYSFLWKKKK----------KSWGVEGWASEQAKKCDPRLGIDPATGVNYVDPETGKMWIYPDLLKQESGGDSKKRGVSETTPESVAKKM-KSGEESEKHGEISNPDDGGGSS 304
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9762.31518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPJ4_ECTSI8.860e-19689.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9762contigEcto-sp8_S_contig9762:499..1527 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1029
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_005170.1
Cds size1029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145342.3382032-CDS-Ecto-sp8_S_contig9762:498..15271681145342.3382032-CDS-Ecto-sp8_S_contig9762:498..1527Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9762 499..1527 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9762.31518.1prot_Ecto-sp8_S_contig9762.31518.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9762 499..1527 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9762.31518.1

>prot_Ecto-sp8_S_contig9762.31518.1 ID=prot_Ecto-sp8_S_contig9762.31518.1|Name=mRNA_Ecto-sp8_S_contig9762.31518.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=343bp
MVSTETIEDPRTIGMLNKIGFRNLGYLGALVQKWENMADEEVSFTEWVLD
NGFIESTTKFADATRQQSKVDSGNMKYLKKELEATREDLSETKKDVARLV
SVNKDLYDKIDKMLHPHAIAVNGIRDTLIAFNKENPAAVANGGGVTFGTG
HVKINSVDRLEEFLATVHARKLGLPSNIITTLRVFVLEGRLVTLSDEYHG
GVGYSFLWKKKKKNKNKNKTKNKSWGVEGWASEQAKKCDPRLGIDPATGV
NYVDPETGKMWIYPDLVKQKSGCESKKRGVSETTPESVAKKMMKSGEELE
KYGETTTPDDGGGSSGNEQEQEQEQEQEQEQVETEEGEVIFP*
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mRNA from alignment at Ecto-sp8_S_contig9762:499..1527-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9762.31518.1 ID=mRNA_Ecto-sp8_S_contig9762.31518.1|Name=mRNA_Ecto-sp8_S_contig9762.31518.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1029bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9762:499..1527- (Ectocarpus species8 EcLAC_412)
ATGGTGTCCACAGAAACGATTGAAGACCCTAGGACGATCGGCATGCTGAA
CAAGATAGGCTTCAGAAACCTTGGCTATCTCGGGGCGCTCGTGCAAAAGT
GGGAAAACATGGCCGACGAAGAAGTTTCGTTCACCGAGTGGGTACTCGAC
AACGGGTTCATCGAGTCCACAACCAAATTCGCGGATGCCACCAGGCAGCA
GAGTAAAGTGGACTCTGGGAACATGAAGTACTTGAAAAAGGAGTTAGAAG
CAACGAGAGAAGACCTGTCGGAGACTAAGAAGGACGTCGCGCGACTCGTG
AGCGTCAACAAGGACCTGTACGACAAGATCGACAAGATGCTCCACCCGCA
CGCGATCGCCGTCAACGGCATCCGGGACACCCTGATTGCATTCAACAAAG
AGAACCCCGCCGCGGTGGCCAACGGTGGCGGCGTGACGTTCGGCACAGGA
CACGTCAAAATCAACAGCGTCGACAGGCTGGAGGAATTTCTGGCGACGGT
GCATGCGCGAAAGTTGGGTCTACCGTCCAACATCATCACGACTCTCCGGG
TGTTTGTTTTGGAGGGGCGGTTGGTGACTCTCAGCGACGAGTACCATGGT
GGCGTCGGGTACTCGTTTCTGTGGAAGAAGAAGAAGAAGAACAAGAACAA
GAACAAGACGAAGAACAAGTCTTGGGGTGTGGAGGGTTGGGCGTCGGAGC
AGGCTAAGAAGTGCGATCCTAGGTTGGGGATCGACCCGGCGACGGGTGTG
AACTACGTCGACCCGGAAACGGGTAAGATGTGGATCTACCCCGACCTTGT
GAAGCAGAAGAGTGGTTGTGAATCCAAGAAGAGGGGGGTGTCAGAGACAA
CACCCGAGTCGGTGGCGAAGAAGATGATGAAGTCGGGTGAGGAGTTGGAG
AAATACGGGGAGACCACCACGCCGGATGACGGTGGCGGTAGTTCGGGGAA
TGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGTGGAGA
CGGAAGAAGGAGAGGTTATTTTCCCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9762:499..1527-

>mRNA_Ecto-sp8_S_contig9762.31518.1 ID=mRNA_Ecto-sp8_S_contig9762.31518.1|Name=mRNA_Ecto-sp8_S_contig9762.31518.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1029bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9762:499..1527- (Ectocarpus species8 EcLAC_412)
ATGGTGTCCACAGAAACGATTGAAGACCCTAGGACGATCGGCATGCTGAA
CAAGATAGGCTTCAGAAACCTTGGCTATCTCGGGGCGCTCGTGCAAAAGT
GGGAAAACATGGCCGACGAAGAAGTTTCGTTCACCGAGTGGGTACTCGAC
AACGGGTTCATCGAGTCCACAACCAAATTCGCGGATGCCACCAGGCAGCA
GAGTAAAGTGGACTCTGGGAACATGAAGTACTTGAAAAAGGAGTTAGAAG
CAACGAGAGAAGACCTGTCGGAGACTAAGAAGGACGTCGCGCGACTCGTG
AGCGTCAACAAGGACCTGTACGACAAGATCGACAAGATGCTCCACCCGCA
CGCGATCGCCGTCAACGGCATCCGGGACACCCTGATTGCATTCAACAAAG
AGAACCCCGCCGCGGTGGCCAACGGTGGCGGCGTGACGTTCGGCACAGGA
CACGTCAAAATCAACAGCGTCGACAGGCTGGAGGAATTTCTGGCGACGGT
GCATGCGCGAAAGTTGGGTCTACCGTCCAACATCATCACGACTCTCCGGG
TGTTTGTTTTGGAGGGGCGGTTGGTGACTCTCAGCGACGAGTACCATGGT
GGCGTCGGGTACTCGTTTCTGTGGAAGAAGAAGAAGAAGAACAAGAACAA
GAACAAGACGAAGAACAAGTCTTGGGGTGTGGAGGGTTGGGCGTCGGAGC
AGGCTAAGAAGTGCGATCCTAGGTTGGGGATCGACCCGGCGACGGGTGTG
AACTACGTCGACCCGGAAACGGGTAAGATGTGGATCTACCCCGACCTTGT
GAAGCAGAAGAGTGGTTGTGAATCCAAGAAGAGGGGGGTGTCAGAGACAA
CACCCGAGTCGGTGGCGAAGAAGATGATGAAGTCGGGTGAGGAGTTGGAG
AAATACGGGGAGACCACCACGCCGGATGACGGTGGCGGTAGTTCGGGGAA
TGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGTGGAGA
CGGAAGAAGGAGAGGTTATTTTCCCGTGA
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