mRNA_Ecto-sp8_S_contig976.31515.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig976.31515.1
Unique NamemRNA_Ecto-sp8_S_contig976.31515.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig976.31515.1 vs. uniprot
Match: Q8QNP6_ESV1K (EsV-1-13 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNP6_ESV1K)

HSP 1 Score: 749 bits (1933), Expect = 7.160e-272
Identity = 361/413 (87.41%), Postives = 375/413 (90.80%), Query Frame = 1 
Query:    1 MANLTNQARTELKAAVRNFMENTPNVHSVNQHARRASHTNTLMKYMSQTFCSSGRPLHEGYYQLNFQNLRYNPGLASDTSVIENFALSPAHATSIMQTLNRRRGISVTFLLVMSTQQNCYHACLILFDARTRKQHFFNPEAHVGCWYNIAFSNRPSLVEGFHTAQLNEDTWPTYQQSMQGIVDNNHYGMPGNCMLYCTLVGVLCTRFGIGKPRLMGDMIVEALQEIDTYNNVDVHHGINHVGSHMTNLWNWLISMTDHMETMSLPPLHDNSVNTVEMVDKRIQLRDKARQCLQDFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPVIHVGHVVAPDTVAERRESIRDAEVQLLRLMFPPTIMCNVVLRTGKLCSRRACVGQPLCWQHKFLTRNHRRTGAGKMRCVAPQHPC 1239
            MANLTN+ART+LKAAVRNFMENTPNVHSVNQHA+RAS+TNTLMKYMSQTFCSSGRPLHEG Y+LNFQNLRYNPGLASD +VIENFALSPAHATSIMQTLNRRRGISVTFL VMSTQQNC HACLILFDARTRKQHFFNPEAHVGCWYNIAFSNRPSLVEGFHTAQLNEDTWPTYQQSMQG+VDNNHYG+PGNCMLYCTLVGVLCTRFGIGKP+LMG+MIVEALQEIDTYNNVDVHHGINHVGSHMT+LWNWLISMTDH ETMSLPPL+ NSVNT EMV+KRI LRDKARQCL DFP                             HPVIHVGHVVAPDTVAERRESIRDAEVQLLRLMFPPTIMCNVVLRTGKLCSRRACVGQPLCWQHKFLTRNHRRTGAG+MRCVAPQHPC
Sbjct:    1 MANLTNEARTQLKAAVRNFMENTPNVHSVNQHAKRASNTNTLMKYMSQTFCSSGRPLHEGLYRLNFQNLRYNPGLASDIAVIENFALSPAHATSIMQTLNRRRGISVTFLHVMSTQQNCSHACLILFDARTRKQHFFNPEAHVGCWYNIAFSNRPSLVEGFHTAQLNEDTWPTYQQSMQGVVDNNHYGLPGNCMLYCTLVGVLCTRFGIGKPKLMGEMIVEALQEIDTYNNVDVHHGINHVGSHMTHLWNWLISMTDHTETMSLPPLNYNSVNTEEMVNKRIHLRDKARQCLLDFPPLPGPPQFTVSETARRARLRNRQTQYLQTHPVIHVGHVVAPDTVAERRESIRDAEVQLLRLMFPPTIMCNVVLRTGKLCSRRACVGQPLCWQHKFLTRNHRRTGAGRMRCVAPQHPC 413
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BLAST of mRNA_Ecto-sp8_S_contig976.31515.1 vs. uniprot
Match: D7G324_ECTSI (EsV-1-13 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G324_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 1.170e-12
Identity = 40/95 (42.11%), Postives = 56/95 (58.95%), Query Frame = 1 
Query:  769 DHMETMSLPPLHDNSVNTVEMVDKRIQLRDKARQCLQDFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPVIHVGHVVAPDTVAERRESIRDAE 1053
            DH +TM+LP L++NSVNT ++V+KR+Q R++AR+ L+DFP                             HP I++GH +AP  VAERR +IRDAE
Sbjct:    2 DHAKTMALPLLNENSVNTAQVVNKRLQRREQARKILEDFPPLPGPPENTVQNVARRARLRNNQLQYLETHPEIYIGHAIAPGVVAERRAAIRDAE 96
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig976.31515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QNP6_ESV1K7.160e-27287.41EsV-1-13 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
D7G324_ECTSI1.170e-1242.11EsV-1-13 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig976contigEcto-sp8_S_contig976:8187..9428 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1242
Hectar predicted targeting categoryother localisation
Exons1
Cds size1242
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145342.1688187-CDS-Ecto-sp8_S_contig976:8186..94281681145342.1688187-CDS-Ecto-sp8_S_contig976:8186..9428Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig976 8187..9428 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig976.31515.1prot_Ecto-sp8_S_contig976.31515.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig976 8187..9428 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig976.31515.1

>prot_Ecto-sp8_S_contig976.31515.1 ID=prot_Ecto-sp8_S_contig976.31515.1|Name=mRNA_Ecto-sp8_S_contig976.31515.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=414bp
MANLTNQARTELKAAVRNFMENTPNVHSVNQHARRASHTNTLMKYMSQTF
CSSGRPLHEGYYQLNFQNLRYNPGLASDTSVIENFALSPAHATSIMQTLN
RRRGISVTFLLVMSTQQNCYHACLILFDARTRKQHFFNPEAHVGCWYNIA
FSNRPSLVEGFHTAQLNEDTWPTYQQSMQGIVDNNHYGMPGNCMLYCTLV
GVLCTRFGIGKPRLMGDMIVEALQEIDTYNNVDVHHGINHVGSHMTNLWN
WLISMTDHMETMSLPPLHDNSVNTVEMVDKRIQLRDKARQCLQDFPPLPG
PPQFTVSETARRARLRDRQTQYLQTHPVIHVGHVVAPDTVAERRESIRDA
EVQLLRLMFPPTIMCNVVLRTGKLCSRRACVGQPLCWQHKFLTRNHRRTG
AGKMRCVAPQHPC*
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mRNA from alignment at Ecto-sp8_S_contig976:8187..9428+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig976.31515.1 ID=mRNA_Ecto-sp8_S_contig976.31515.1|Name=mRNA_Ecto-sp8_S_contig976.31515.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1242bp|location=Sequence derived from alignment at Ecto-sp8_S_contig976:8187..9428+ (Ectocarpus species8 EcLAC_412)
ATGGCAAACCTGACCAACCAAGCACGGACAGAGCTGAAGGCCGCCGTGAG
AAACTTCATGGAGAACACGCCGAACGTGCATTCTGTTAATCAACACGCTA
GACGTGCTTCGCACACCAATACGCTCATGAAGTACATGTCACAAACGTTT
TGCAGCTCCGGCCGTCCTTTACACGAAGGCTATTACCAACTGAATTTCCA
GAATTTACGATATAATCCCGGGCTCGCGTCTGACACATCAGTGATTGAAA
ATTTCGCATTATCTCCTGCTCATGCTACCTCCATCATGCAAACTTTAAAC
AGGAGGAGGGGAATCAGTGTCACATTCCTGCTTGTGATGTCAACACAACA
AAATTGTTACCACGCATGTCTTATTCTGTTCGATGCTCGAACCAGAAAAC
AACACTTCTTCAATCCGGAGGCGCACGTGGGCTGCTGGTACAACATTGCC
TTTAGCAACAGACCTTCACTCGTCGAGGGCTTCCATACTGCACAACTGAA
CGAAGACACTTGGCCAACCTATCAGCAGTCAATGCAGGGTATTGTGGACA
ACAATCACTACGGAATGCCTGGCAACTGTATGCTGTACTGCACACTGGTG
GGCGTTTTGTGTACGCGTTTCGGCATAGGAAAGCCCAGACTGATGGGTGA
CATGATCGTAGAGGCCCTCCAAGAAATTGATACGTACAACAATGTTGACG
TTCATCATGGTATCAACCACGTGGGATCGCACATGACCAATCTCTGGAAT
TGGCTGATATCAATGACAGATCACATGGAGACAATGTCTCTACCTCCGCT
CCATGATAACTCAGTAAACACCGTGGAAATGGTAGACAAGAGGATACAAC
TCAGGGACAAGGCAAGACAATGTTTGCAGGATTTTCCACCTCTCCCAGGC
CCTCCGCAGTTCACGGTATCAGAAACCGCAAGAAGAGCTAGACTCCGAGA
CAGGCAGACACAATACTTGCAGACACACCCCGTGATACACGTCGGGCATG
TCGTCGCCCCCGACACGGTCGCTGAGCGGCGCGAGTCGATCAGAGACGCC
GAGGTGCAGCTACTGAGGTTGATGTTTCCACCAACCATTATGTGCAACGT
TGTTCTGCGTACGGGAAAATTGTGCTCCAGAAGGGCGTGTGTCGGGCAGC
CCCTCTGTTGGCAACATAAATTCCTAACCAGGAACCATAGGCGCACGGGT
GCCGGTAAGATGAGGTGTGTCGCGCCGCAACACCCCTGCTAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig976:8187..9428+

>mRNA_Ecto-sp8_S_contig976.31515.1 ID=mRNA_Ecto-sp8_S_contig976.31515.1|Name=mRNA_Ecto-sp8_S_contig976.31515.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1242bp|location=Sequence derived from alignment at Ecto-sp8_S_contig976:8187..9428+ (Ectocarpus species8 EcLAC_412)
ATGGCAAACCTGACCAACCAAGCACGGACAGAGCTGAAGGCCGCCGTGAG
AAACTTCATGGAGAACACGCCGAACGTGCATTCTGTTAATCAACACGCTA
GACGTGCTTCGCACACCAATACGCTCATGAAGTACATGTCACAAACGTTT
TGCAGCTCCGGCCGTCCTTTACACGAAGGCTATTACCAACTGAATTTCCA
GAATTTACGATATAATCCCGGGCTCGCGTCTGACACATCAGTGATTGAAA
ATTTCGCATTATCTCCTGCTCATGCTACCTCCATCATGCAAACTTTAAAC
AGGAGGAGGGGAATCAGTGTCACATTCCTGCTTGTGATGTCAACACAACA
AAATTGTTACCACGCATGTCTTATTCTGTTCGATGCTCGAACCAGAAAAC
AACACTTCTTCAATCCGGAGGCGCACGTGGGCTGCTGGTACAACATTGCC
TTTAGCAACAGACCTTCACTCGTCGAGGGCTTCCATACTGCACAACTGAA
CGAAGACACTTGGCCAACCTATCAGCAGTCAATGCAGGGTATTGTGGACA
ACAATCACTACGGAATGCCTGGCAACTGTATGCTGTACTGCACACTGGTG
GGCGTTTTGTGTACGCGTTTCGGCATAGGAAAGCCCAGACTGATGGGTGA
CATGATCGTAGAGGCCCTCCAAGAAATTGATACGTACAACAATGTTGACG
TTCATCATGGTATCAACCACGTGGGATCGCACATGACCAATCTCTGGAAT
TGGCTGATATCAATGACAGATCACATGGAGACAATGTCTCTACCTCCGCT
CCATGATAACTCAGTAAACACCGTGGAAATGGTAGACAAGAGGATACAAC
TCAGGGACAAGGCAAGACAATGTTTGCAGGATTTTCCACCTCTCCCAGGC
CCTCCGCAGTTCACGGTATCAGAAACCGCAAGAAGAGCTAGACTCCGAGA
CAGGCAGACACAATACTTGCAGACACACCCCGTGATACACGTCGGGCATG
TCGTCGCCCCCGACACGGTCGCTGAGCGGCGCGAGTCGATCAGAGACGCC
GAGGTGCAGCTACTGAGGTTGATGTTTCCACCAACCATTATGTGCAACGT
TGTTCTGCGTACGGGAAAATTGTGCTCCAGAAGGGCGTGTGTCGGGCAGC
CCCTCTGTTGGCAACATAAATTCCTAACCAGGAACCATAGGCGCACGGGT
GCCGGTAAGATGAGGTGTGTCGCGCCGCAACACCCCTGCTAA
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