mRNA_Ecto-sp8_S_contig97564.31508.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig97564.31508.1
Unique NamemRNA_Ecto-sp8_S_contig97564.31508.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig97564.31508.1 vs. uniprot
Match: D7G5J9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5J9_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 4.550e-39
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 1 
Query:    1 MPDADLWIDTAEELRRAGSPCLVGSIPNGDGVGSTTIRHLATWIFSREMGCDWVTPDWGKKVV 189
            MPDADLWIDTAEELRRAGSPCLVGSIPNGDG GSTTIRHLATWIFSREMGCDWVTPDWGKK V
Sbjct:  141 MPDADLWIDTAEELRRAGSPCLVGSIPNGDGAGSTTIRHLATWIFSREMGCDWVTPDWGKKFV 203
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig97564.31508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5J9_ECTSI4.550e-3996.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig97564contigEcto-sp8_S_contig97564:34..222 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size189
Hectar predicted targeting categoryother localisation
Exons1
Cds size189
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145341.749631-CDS-Ecto-sp8_S_contig97564:33..2221681145341.749631-CDS-Ecto-sp8_S_contig97564:33..222Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig97564 34..222 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig97564.31508.1prot_Ecto-sp8_S_contig97564.31508.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig97564 34..222 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig97564.31508.1

>prot_Ecto-sp8_S_contig97564.31508.1 ID=prot_Ecto-sp8_S_contig97564.31508.1|Name=mRNA_Ecto-sp8_S_contig97564.31508.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=63bp
MPDADLWIDTAEELRRAGSPCLVGSIPNGDGVGSTTIRHLATWIFSREMG
CDWVTPDWGKKVV
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mRNA from alignment at Ecto-sp8_S_contig97564:34..222+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig97564.31508.1 ID=mRNA_Ecto-sp8_S_contig97564.31508.1|Name=mRNA_Ecto-sp8_S_contig97564.31508.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=189bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97564:34..222+ (Ectocarpus species8 EcLAC_412)
ATGCCGGACGCGGACCTTTGGATCGATACGGCCGAGGAGCTGAGACGGGC
GGGGTCGCCATGCCTCGTTGGCTCGATACCGAACGGTGACGGTGTCGGCA
GTACCACCATCAGACATCTGGCGACGTGGATATTTTCGAGGGAGATGGGG
TGCGATTGGGTCACGCCCGACTGGGGGAAGAAGGTCGTG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig97564:34..222+

>mRNA_Ecto-sp8_S_contig97564.31508.1 ID=mRNA_Ecto-sp8_S_contig97564.31508.1|Name=mRNA_Ecto-sp8_S_contig97564.31508.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=189bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97564:34..222+ (Ectocarpus species8 EcLAC_412)
ATGCCGGACGCGGACCTTTGGATCGATACGGCCGAGGAGCTGAGACGGGC
GGGGTCGCCATGCCTCGTTGGCTCGATACCGAACGGTGACGGTGTCGGCA
GTACCACCATCAGACATCTGGCGACGTGGATATTTTCGAGGGAGATGGGG
TGCGATTGGGTCACGCCCGACTGGGGGAAGAAGGTCGTG
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