mRNA_Ecto-sp8_S_contig97559.31507.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig97559.31507.1
Unique NamemRNA_Ecto-sp8_S_contig97559.31507.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig97559.31507.1 vs. uniprot
Match: A0A6H5J9H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9H5_9PHAE)

HSP 1 Score: 212 bits (539), Expect = 4.010e-66
Identity = 115/116 (99.14%), Postives = 116/116 (100.00%), Query Frame = 1
Query:    1 RFFAWYPAASSPPAILGDMLASMFNVIGFSWEASPASTELETVVLDQLGRAVDLPEAFLSSGXXXXXVIQGSASEGTLVAVLAARTRALKHMRRRSPAGVSDSELLAKMTLYASDQ 348
            RFFAWYPAASSPPAILGDMLASMFNVIGFSWEASPASTELETVVLDQLGRAVDLPEAFLSSGXXXXXVIQGSASEGTLVAV+AARTRALKHMRRRSPAGVSDSELLAKMTLYASDQ
Sbjct:  148 RFFAWYPAASSPPAILGDMLASMFNVIGFSWEASPASTELETVVLDQLGRAVDLPEAFLSSGXXXXXVIQGSASEGTLVAVVAARTRALKHMRRRSPAGVSDSELLAKMTLYASDQ 263          
BLAST of mRNA_Ecto-sp8_S_contig97559.31507.1 vs. uniprot
Match: D8LUA2_ECTSI (Tyrosine Decarboxylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUA2_ECTSI)

HSP 1 Score: 206 bits (524), Expect = 6.220e-62
Identity = 115/117 (98.29%), Postives = 115/117 (98.29%), Query Frame = 1
Query:    1 RFFAWYPAASSPPAILGDMLASMFNVIGFSWEASPASTELETVVLDQLGRAVDLPEAFLSSGXXXXX-VIQGSASEGTLVAVLAARTRALKHMRRRSPAGVSDSELLAKMTLYASDQ 348
            RFFAWYPAASSPPAILGDMLASMFNVIGFSWEASPASTELETVVLDQLGRAVDLPEAFLSSGXXXXX VIQGSASE TLVAVLAARTRALKHMRRRSPAGVSDSELLAKMTLYASDQ
Sbjct:  149 RFFAWYPAASSPPAILGDMLASMFNVIGFSWEASPASTELETVVLDQLGRAVDLPEAFLSSGXXXXXXVIQGSASESTLVAVLAARTRALKHMRRRSPAGVSDSELLAKMTLYASDQ 265          
BLAST of mRNA_Ecto-sp8_S_contig97559.31507.1 vs. uniprot
Match: A0A2Y9G3N0_TRIMA (aromatic-L-amino-acid decarboxylase n=2 Tax=Eutheria TaxID=9347 RepID=A0A2Y9G3N0_TRIMA)

HSP 1 Score: 119 bits (298), Expect = 2.250e-30
Identity = 62/117 (52.99%), Postives = 84/117 (71.79%), Query Frame = 1
Query:    1 RFFAWYPAASSPPAILGDMLASMFNVIGFSWEASPASTELETVVLDQLGRAVDLPEAFLS-SGXXXXXVIQGSASEGTLVAVLAARTRALKHMRRRSPAGVSDSELLAKMTLYASDQ 348
             FFA++P ASS PA+L DML      IGFSW ASPA TELETV++D LG+ ++LPE FL+ S      VIQGSASE TLVA+LAART+ ++H++  SP  ++ + ++ K+  Y+SDQ
Sbjct:   75 HFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLELPETFLAGSNGEGGGVIQGSASEATLVALLAARTKVMRHLQAASPE-LTQAAIMEKLVAYSSDQ 190          
BLAST of mRNA_Ecto-sp8_S_contig97559.31507.1 vs. uniprot
Match: A0A7J7V2Y9_MYOMY (Dopa decarboxylase n=7 Tax=Vespertilionidae TaxID=9431 RepID=A0A7J7V2Y9_MYOMY)

HSP 1 Score: 121 bits (303), Expect = 4.580e-30
Identity = 65/117 (55.56%), Postives = 85/117 (72.65%), Query Frame = 1
Query:    1 RFFAWYPAASSPPAILGDMLASMFNVIGFSWEASPASTELETVVLDQLGRAVDLPEAFLSS-GXXXXXVIQGSASEGTLVAVLAARTRALKHMRRRSPAGVSDSELLAKMTLYASDQ 348
            RFFA++P ASS PA+L DML      IGFSW ASPA TELETV+LD LG+ + LPEAFL+  G     VIQGSASE TL+A+LAAR+RA + ++   P G++++ ++ K+  YASDQ
Sbjct:   75 RFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMLDWLGKMLRLPEAFLAEKGGAGGGVIQGSASEATLMALLAARSRATRRLQAARP-GLTEAAVMEKLVAYASDQ 190          
BLAST of mRNA_Ecto-sp8_S_contig97559.31507.1 vs. uniprot
Match: UPI0004BDB6F6 (aromatic-L-amino-acid decarboxylase n=1 Tax=Equus przewalskii TaxID=9798 RepID=UPI0004BDB6F6)

HSP 1 Score: 116 bits (290), Expect = 9.360e-30
Identity = 61/116 (52.59%), Postives = 83/116 (71.55%), Query Frame = 1
Query:    4 FFAWYPAASSPPAILGDMLASMFNVIGFSWEASPASTELETVVLDQLGRAVDLPEAFLS-SGXXXXXVIQGSASEGTLVAVLAARTRALKHMRRRSPAGVSDSELLAKMTLYASDQ 348
            FFA++P ASS P++L DML      IGFSW ASPA TELETV++D LG+ + LPEAFL+ +      VIQGSASE TLVA+LAART+  + ++  SP G++ + ++ K+  Y+SDQ
Sbjct:   76 FFAYFPTASSYPSMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGNAGEGGGVIQGSASEATLVALLAARTKVTRRLQAASP-GLTQAAIMEKLVAYSSDQ 190          
BLAST of mRNA_Ecto-sp8_S_contig97559.31507.1 vs. uniprot
Match: A0A7J7TPD2_PIPKU (Dopa decarboxylase n=3 Tax=Vespertilionidae TaxID=9431 RepID=A0A7J7TPD2_PIPKU)

HSP 1 Score: 120 bits (300), Expect = 1.340e-29
Identity = 64/117 (54.70%), Postives = 85/117 (72.65%), Query Frame = 1
Query:    1 RFFAWYPAASSPPAILGDMLASMFNVIGFSWEASPASTELETVVLDQLGRAVDLPEAFLS-SGXXXXXVIQGSASEGTLVAVLAARTRALKHMRRRSPAGVSDSELLAKMTLYASDQ 348
            RFFA++P ASS PA+L DML      IGFSW ASPA TELETV+LD LG+ + LP AFL+ +G     VIQGSASE TL+A+LAAR+RA + ++   P G++++ ++ K+  YASDQ
Sbjct:   75 RFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMLDWLGKMLQLPAAFLAENGGAGGGVIQGSASEATLMALLAARSRAARRLQAARP-GLTEAAVMEKLVAYASDQ 190          
BLAST of mRNA_Ecto-sp8_S_contig97559.31507.1 vs. uniprot
Match: A0A5A8CTM0_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CTM0_CAFRO)

HSP 1 Score: 120 bits (301), Expect = 1.430e-29
Identity = 64/121 (52.89%), Postives = 83/121 (68.60%), Query Frame = 1
Query:    4 FFAWYPAASSPPAILGDMLASMFNVIGFSWEASPASTELETVVLDQLGRAVDLPEAFLSSGXXXXXVIQGSASEGTLVAVLAARTRALKHMRRRSPA------GVSDSELLAKMTLYASDQ 348
            FF+++PA +S P +LGDMLAS FNVIGFSW ASPA+TELE++ LD LG  + LPE+FL+ G     VIQG+ASE T+VA+LA+R RAL   R  +PA      G  +  +  K  +Y SDQ
Sbjct:  130 FFSYFPANTSYPGLLGDMLASCFNVIGFSWIASPAATELESITLDWLGELIGLPESFLTRGGKGGGVIQGTASEATIVALLASRARALSRDRDGAPALDAGDGGALEDAMAPKWCVYGSDQ 250          
BLAST of mRNA_Ecto-sp8_S_contig97559.31507.1 vs. uniprot
Match: F7DVD1_MONDO (Uncharacterized protein n=9 Tax=Metatheria TaxID=9263 RepID=F7DVD1_MONDO)

HSP 1 Score: 120 bits (300), Expect = 1.640e-29
Identity = 63/116 (54.31%), Postives = 85/116 (73.28%), Query Frame = 1
Query:    4 FFAWYPAASSPPAILGDMLASMFNVIGFSWEASPASTELETVVLDQLGRAVDLPEAFLSS-GXXXXXVIQGSASEGTLVAVLAARTRALKHMRRRSPAGVSDSELLAKMTLYASDQ 348
            FFA++P ASS PA+L DML+     IGFSW ASPA TELETV+LD LG+ ++LPEAFL+        VIQGSASE TLV +LAART+ ++ ++ +SP G+++  ++ K+  YASDQ
Sbjct:  107 FFAYFPTASSYPAMLADMLSGAIGCIGFSWIASPACTELETVMLDWLGKMINLPEAFLAGRDGEGGGVIQGSASEATLVTLLAARTKVIRQLQAKSP-GLTEGAIMDKLVAYASDQ 221          
BLAST of mRNA_Ecto-sp8_S_contig97559.31507.1 vs. uniprot
Match: UPI0007EE57B2 (aromatic-L-amino-acid decarboxylase isoform X1 n=1 Tax=Oryctolagus cuniculus TaxID=9986 RepID=UPI0007EE57B2)

HSP 1 Score: 117 bits (292), Expect = 2.130e-29
Identity = 61/116 (52.59%), Postives = 85/116 (73.28%), Query Frame = 1
Query:    4 FFAWYPAASSPPAILGDMLASMFNVIGFSWEASPASTELETVVLDQLGRAVDLPEAFLSSGXXXXX-VIQGSASEGTLVAVLAARTRALKHMRRRSPAGVSDSELLAKMTLYASDQ 348
            FFA++P A+S PA+L DML    + IGFSW ASPA TELETV++D LG+ ++LPEAFL+ G      VIQGSASE TLVA+LAART+ ++ ++  SP  ++ + ++ K+  Y+SDQ
Sbjct:   76 FFAYFPTANSYPAMLADMLCGAISCIGFSWAASPACTELETVMMDWLGKMLELPEAFLAGGAGEGGGVIQGSASEATLVALLAARTKVIRRLQAASPE-LTPASIMDKLVAYSSDQ 190          
BLAST of mRNA_Ecto-sp8_S_contig97559.31507.1 vs. uniprot
Match: A0A5N4C4I8_CAMDR (Aromatic-L-amino-acid decarboxylase n=3 Tax=Camelus TaxID=9836 RepID=A0A5N4C4I8_CAMDR)

HSP 1 Score: 119 bits (297), Expect = 2.880e-29
Identity = 64/116 (55.17%), Postives = 82/116 (70.69%), Query Frame = 1
Query:    4 FFAWYPAASSPPAILGDMLASMFNVIGFSWEASPASTELETVVLDQLGRAVDLPEAFLSS-GXXXXXVIQGSASEGTLVAVLAARTRALKHMRRRSPAGVSDSELLAKMTLYASDQ 348
            FFA++P ASS PA+L DML      IGFSW ASPA TELETV++D LGR + LPEAFL+        VIQGSASE TLVA+LAART+  + ++  SP G++ + ++ K+  YASDQ
Sbjct:   76 FFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGRMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVTRRLQTASP-GLTQAAVMEKLVAYASDQ 190          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig97559.31507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J9H5_9PHAE4.010e-6699.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LUA2_ECTSI6.220e-6298.29Tyrosine Decarboxylase n=1 Tax=Ectocarpus siliculo... [more]
A0A2Y9G3N0_TRIMA2.250e-3052.99aromatic-L-amino-acid decarboxylase n=2 Tax=Euther... [more]
A0A7J7V2Y9_MYOMY4.580e-3055.56Dopa decarboxylase n=7 Tax=Vespertilionidae TaxID=... [more]
UPI0004BDB6F69.360e-3052.59aromatic-L-amino-acid decarboxylase n=1 Tax=Equus ... [more]
A0A7J7TPD2_PIPKU1.340e-2954.70Dopa decarboxylase n=3 Tax=Vespertilionidae TaxID=... [more]
A0A5A8CTM0_CAFRO1.430e-2952.89Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
F7DVD1_MONDO1.640e-2954.31Uncharacterized protein n=9 Tax=Metatheria TaxID=9... [more]
UPI0007EE57B22.130e-2952.59aromatic-L-amino-acid decarboxylase isoform X1 n=1... [more]
A0A5N4C4I8_CAMDR2.880e-2955.17Aromatic-L-amino-acid decarboxylase n=3 Tax=Camelu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig97559contigEcto-sp8_S_contig97559:26..566 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score208.0
Seed ortholog evalue2.4e-51
Seed eggNOG ortholog2880.D8LUA2
Model size348
KEGG rclassRC00299
KEGG koko:K01593
KEGG ReactionR00685,R00699,R00736,R02080,R02701,R04909
KEGG Pathwayko00350,ko00360,ko00380,ko00901,ko00950,ko00965,ko01100,ko01110,ko04726,ko04728,ko05030,ko05031,ko05034,map00350,map00360,map00380,map00901,map00950,map00965,map01100,map01110,map04726,map04728,map05030,map05031,map05034
KEGG ModuleM00037,M00042
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.decarboxylase
EggNOG OGsCOG0076@1,KOG0628@2759
EC4.1.1.105,4.1.1.28
Cds size348
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145341.6990242-CDS-Ecto-sp8_S_contig97559:25..1611681145341.6990242-CDS-Ecto-sp8_S_contig97559:25..161Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig97559 26..161 +
1681145341.7157428-CDS-Ecto-sp8_S_contig97559:354..5661681145341.7157428-CDS-Ecto-sp8_S_contig97559:354..566Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig97559 355..566 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig97559.31507.1prot_Ecto-sp8_S_contig97559.31507.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig97559 26..566 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig97559.31507.1

>prot_Ecto-sp8_S_contig97559.31507.1 ID=prot_Ecto-sp8_S_contig97559.31507.1|Name=mRNA_Ecto-sp8_S_contig97559.31507.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=116bp
RFFAWYPAASSPPAILGDMLASMFNVIGFSWEASPASTELETVVLDQLGR
AVDLPEAFLSSGGGGGGVIQGSASEGTLVAVLAARTRALKHMRRRSPAGV
SDSELLAKMTLYASDQ
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mRNA from alignment at Ecto-sp8_S_contig97559:26..566+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig97559.31507.1 ID=mRNA_Ecto-sp8_S_contig97559.31507.1|Name=mRNA_Ecto-sp8_S_contig97559.31507.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=541bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97559:26..566+ (Ectocarpus species8 EcLAC_412)
AGGTTCTTCGCGTGGTATCCGGCCGCTTCTTCCCCTCCCGCCATCTTGGG CGACATGCTGGCGTCGATGTTCAACGTGATAGGCTTCAGCTGGGAGGCCA GCCCCGCGTCGACAGAGCTGGAGACCGTGGTCCTCGGTGAGCTGATGGTG GCGGAGCCCCTTCTTCAAAAGTAGATCGGAAATATCACATTGGTTCCCGG GCATCGCGCGGGGTACAATTGGGAACGTTGAGTGACGGTGTCGGTTTCCT CTACGATACACGCCCGTGCGGATGGATACCAGCCCCCGTTCGTGTACCCG TGGTTGGTGCCCGTCTCTTGTGCCGGTAGATCAGCTCGGGAGGGCGGTGG ATCTCCCCGAGGCGTTCTTGTCGAGCGGGGGGGGGGGGGGCGGGGTCATC CAGGGGTCCGCGAGCGAGGGCACCTTGGTGGCCGTGCTGGCGGCGAGGAC GAGGGCTCTCAAGCACATGCGGAGGCGGAGCCCTGCCGGGGTAAGCGATA GCGAGCTGCTGGCGAAGATGACCCTTTACGCCAGCGATCAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig97559:26..566+

>mRNA_Ecto-sp8_S_contig97559.31507.1 ID=mRNA_Ecto-sp8_S_contig97559.31507.1|Name=mRNA_Ecto-sp8_S_contig97559.31507.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97559:26..566+ (Ectocarpus species8 EcLAC_412)
AGGTTCTTCGCGTGGTATCCGGCCGCTTCTTCCCCTCCCGCCATCTTGGG
CGACATGCTGGCGTCGATGTTCAACGTGATAGGCTTCAGCTGGGAGGCCA
GCCCCGCGTCGACAGAGCTGGAGACCGTGGTCCTCGATCAGCTCGGGAGG
GCGGTGGATCTCCCCGAGGCGTTCTTGTCGAGCGGGGGGGGGGGGGGCGG
GGTCATCCAGGGGTCCGCGAGCGAGGGCACCTTGGTGGCCGTGCTGGCGG
CGAGGACGAGGGCTCTCAAGCACATGCGGAGGCGGAGCCCTGCCGGGGTA
AGCGATAGCGAGCTGCTGGCGAAGATGACCCTTTACGCCAGCGATCAG
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