mRNA_Ecto-sp8_S_contig9748.31492.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9748.31492.1
Unique NamemRNA_Ecto-sp8_S_contig9748.31492.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9748.31492.1 vs. uniprot
Match: UPI0018E2BE22 (PHD finger-like domain-containing protein 5A isoform X3 n=1 Tax=Arvicola amphibius TaxID=1047088 RepID=UPI0018E2BE22)

HSP 1 Score: 186 bits (472), Expect = 1.470e-59
Identity = 79/86 (91.86%), Postives = 84/86 (97.67%), Query Frame = 1 
Query:   67 PGDGKCVVCDSYVRPCTLVRICDECNYGSFEGRCTICGGPGISDAYYCRECTQQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 324
            PGDGKCV+CDSYVRPCTLVRICDECNYGS++GRC ICGGPG+SDAYYC+ECT QEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR
Sbjct:    3 PGDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 88
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9748.31492.1 vs. uniprot
Match: A0A6A4RYQ7_SCOMX (Uncharacterized protein n=1 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A6A4RYQ7_SCOMX)

HSP 1 Score: 186 bits (472), Expect = 3.550e-59
Identity = 79/86 (91.86%), Postives = 84/86 (97.67%), Query Frame = 1 
Query:   67 PGDGKCVVCDSYVRPCTLVRICDECNYGSFEGRCTICGGPGISDAYYCRECTQQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 324
            PGDGKCV+CDSYVRPCTLVRICDECNYGS++GRC ICGGPG+SDAYYC+ECT QEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR
Sbjct:   31 PGDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 116
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9748.31492.1 vs. uniprot
Match: A0A671U053_SPAAU (PHD finger protein 5A n=1 Tax=Sparus aurata TaxID=8175 RepID=A0A671U053_SPAAU)

HSP 1 Score: 186 bits (472), Expect = 6.120e-59
Identity = 79/86 (91.86%), Postives = 84/86 (97.67%), Query Frame = 1 
Query:   67 PGDGKCVVCDSYVRPCTLVRICDECNYGSFEGRCTICGGPGISDAYYCRECTQQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 324
            PGDGKCV+CDSYVRPCTLVRICDECNYGS++GRC ICGGPG+SDAYYC+ECT QEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR
Sbjct:   48 PGDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 133
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9748.31492.1 vs. uniprot
Match: A0A022QQC9_ERYGU (Uncharacterized protein n=5 Tax=Eukaryota TaxID=2759 RepID=A0A022QQC9_ERYGU)

HSP 1 Score: 184 bits (466), Expect = 2.410e-58
Identity = 78/84 (92.86%), Postives = 83/84 (98.81%), Query Frame = 1 
Query:   73 DGKCVVCDSYVRPCTLVRICDECNYGSFEGRCTICGGPGISDAYYCRECTQQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 324
            DGKCV+CDSYVRPCTLVR+CDECNYGSF+GRC ICGGPGISDAYYC+ECTQQEKDRDGCPKIVNLGS+KTDLFYERKKYGFKKR
Sbjct:   27 DGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGPGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9748.31492.1 vs. uniprot
Match: A0A2I0MJL9_COLLI (PHD finger protein 5A n=10 Tax=Neognathae TaxID=8825 RepID=A0A2I0MJL9_COLLI)

HSP 1 Score: 183 bits (465), Expect = 2.420e-58
Identity = 78/85 (91.76%), Postives = 83/85 (97.65%), Query Frame = 1 
Query:   70 GDGKCVVCDSYVRPCTLVRICDECNYGSFEGRCTICGGPGISDAYYCRECTQQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 324
            GDGKCV+CDSYVRPCTLVRICDECNYGS++GRC ICGGPG+SDAYYC+ECT QEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR
Sbjct:   15 GDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 99
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9748.31492.1 vs. uniprot
Match: H0WLK5_OTOGA (Uncharacterized protein n=65 Tax=Euteleostomi TaxID=117571 RepID=H0WLK5_OTOGA)

HSP 1 Score: 183 bits (465), Expect = 2.660e-58
Identity = 78/85 (91.76%), Postives = 83/85 (97.65%), Query Frame = 1 
Query:   70 GDGKCVVCDSYVRPCTLVRICDECNYGSFEGRCTICGGPGISDAYYCRECTQQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 324
            GDGKCV+CDSYVRPCTLVRICDECNYGS++GRC ICGGPG+SDAYYC+ECT QEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR
Sbjct:   18 GDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 102
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9748.31492.1 vs. uniprot
Match: H2Z5I3_CIOSA (Uncharacterized protein n=2 Tax=Bilateria TaxID=33213 RepID=H2Z5I3_CIOSA)

HSP 1 Score: 183 bits (465), Expect = 2.660e-58
Identity = 77/85 (90.59%), Postives = 83/85 (97.65%), Query Frame = 1 
Query:   70 GDGKCVVCDSYVRPCTLVRICDECNYGSFEGRCTICGGPGISDAYYCRECTQQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 324
            GDGKCV+CDSYVRPCTLVRICDECNYGS++GRC ICGGPG+SDAYYC+ECT QEKDRDGCPKIVNLGS+KTDLFYERKKYGFKKR
Sbjct:   18 GDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTMQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 102
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9748.31492.1 vs. uniprot
Match: A0A663MP67_ATHCN (PHD finger protein 5A n=1 Tax=Athene cunicularia TaxID=194338 RepID=A0A663MP67_ATHCN)

HSP 1 Score: 183 bits (465), Expect = 2.830e-58
Identity = 78/85 (91.76%), Postives = 83/85 (97.65%), Query Frame = 1 
Query:   70 GDGKCVVCDSYVRPCTLVRICDECNYGSFEGRCTICGGPGISDAYYCRECTQQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 324
            GDGKCV+CDSYVRPCTLVRICDECNYGS++GRC ICGGPG+SDAYYC+ECT QEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR
Sbjct:   20 GDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 104
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9748.31492.1 vs. uniprot
Match: UPI001B7EDB61 (PHD finger-like domain-containing protein 5A n=1 Tax=Polyodon spathula TaxID=7913 RepID=UPI001B7EDB61)

HSP 1 Score: 183 bits (465), Expect = 3.010e-58
Identity = 78/85 (91.76%), Postives = 83/85 (97.65%), Query Frame = 1 
Query:   70 GDGKCVVCDSYVRPCTLVRICDECNYGSFEGRCTICGGPGISDAYYCRECTQQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 324
            GDGKCV+CDSYVRPCTLVRICDECNYGS++GRC ICGGPG+SDAYYC+ECT QEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR
Sbjct:   22 GDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 106
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9748.31492.1 vs. uniprot
Match: A0A8C9U8P2_SERCA (PHD finger protein 5A n=3 Tax=Sauria TaxID=32561 RepID=A0A8C9U8P2_SERCA)

HSP 1 Score: 183 bits (465), Expect = 3.110e-58
Identity = 78/85 (91.76%), Postives = 83/85 (97.65%), Query Frame = 1 
Query:   70 GDGKCVVCDSYVRPCTLVRICDECNYGSFEGRCTICGGPGISDAYYCRECTQQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 324
            GDGKCV+CDSYVRPCTLVRICDECNYGS++GRC ICGGPG+SDAYYC+ECT QEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR
Sbjct:   23 GDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 107
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9748.31492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0018E2BE221.470e-5991.86PHD finger-like domain-containing protein 5A isofo... [more]
A0A6A4RYQ7_SCOMX3.550e-5991.86Uncharacterized protein n=1 Tax=Scophthalmus maxim... [more]
A0A671U053_SPAAU6.120e-5991.86PHD finger protein 5A n=1 Tax=Sparus aurata TaxID=... [more]
A0A022QQC9_ERYGU2.410e-5892.86Uncharacterized protein n=5 Tax=Eukaryota TaxID=27... [more]
A0A2I0MJL9_COLLI2.420e-5891.76PHD finger protein 5A n=10 Tax=Neognathae TaxID=88... [more]
H0WLK5_OTOGA2.660e-5891.76Uncharacterized protein n=65 Tax=Euteleostomi TaxI... [more]
H2Z5I3_CIOSA2.660e-5890.59Uncharacterized protein n=2 Tax=Bilateria TaxID=33... [more]
A0A663MP67_ATHCN2.830e-5891.76PHD finger protein 5A n=1 Tax=Athene cunicularia T... [more]
UPI001B7EDB613.010e-5891.76PHD finger-like domain-containing protein 5A n=1 T... [more]
A0A8C9U8P2_SERCA3.110e-5891.76PHD finger protein 5A n=3 Tax=Sauria TaxID=32561 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9748contigEcto-sp8_S_contig9748:514..1121 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score189.9
Seed ortholog evalue6.3e-46
Seed eggNOG ortholog2880.D7G4T7
Preferred namePHF5A
Model size327
KEGG koko:K12834
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
Hectar predicted targeting categoryother localisation
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003700,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005686,GO:0005689,GO:0005737,GO:0006139,GO:0006355,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009410,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016071,GO:0016363,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032991,GO:0034399,GO:0034622,GO:0034641,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045292,GO:0045893,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:0140110,GO:1901360,GO:1901363,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1990904,GO:2000112,GO:2001141
Exons2
EggNOG free text desc.mRNA splicing, via spliceosome
EggNOG OGsKOG1705@1,KOG1705@2759
Cds size327
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145340.5178888-CDS-Ecto-sp8_S_contig9748:513..6721681145340.5178888-CDS-Ecto-sp8_S_contig9748:513..672Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9748 514..672 +
1681145340.5306158-CDS-Ecto-sp8_S_contig9748:953..11211681145340.5306158-CDS-Ecto-sp8_S_contig9748:953..1121Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9748 954..1121 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9748.31492.1prot_Ecto-sp8_S_contig9748.31492.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9748 514..1121 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9748.31492.1

>prot_Ecto-sp8_S_contig9748.31492.1 ID=prot_Ecto-sp8_S_contig9748.31492.1|Name=mRNA_Ecto-sp8_S_contig9748.31492.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=109bp
HLPLLVAPQTNVVSVTVTVTDVPGDGKCVVCDSYVRPCTLVRICDECNYG
SFEGRCTICGGPGISDAYYCRECTQQEKDRDGCPKIVNLGSSKTDLFYER
KKYGFKKR*
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mRNA from alignment at Ecto-sp8_S_contig9748:514..1121+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9748.31492.1 ID=mRNA_Ecto-sp8_S_contig9748.31492.1|Name=mRNA_Ecto-sp8_S_contig9748.31492.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=608bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9748:514..1121+ (Ectocarpus species8 EcLAC_412)
CACCTCCCCTTGCTCGTTGCTCCTCAAACAAATGTGGTTTCTGTGACTGT
GACTGTGACTGACGTTCCAGGCGATGGCAAGTGCGTGGTGTGCGACTCTT
ACGTGCGCCCCTGCACGCTAGTCCGCATCTGCGACGAGTGCAACTACGGC
TCCTTCGAGGTGGGTAACTGTAATGTTTGTGCGACCCCATCATACGGTGC
GATCACGAAAAAACACCAGGACCGTAGCAGCTTGGTTCACGAACATTGCG
TTAAAAGTAGCCTTCGGTTACCCGCGCGTGACATTGTTATCTCGGATAGA
CCTGTACTCCAGCTTTCTTGCGTCAGCCTTCGCTGCCTGCATCCATTGGT
ATTCTATGTCGTCGCTCGAAATTTGTCGAGACAGAATTGTGCCGTGACCA
GTCGCTTCTCGAACTTTTCTTGTTTCCCCTCTTCTCTCAGGGACGGTGCA
CGATCTGCGGCGGGCCCGGCATCTCGGACGCCTATTACTGCCGCGAGTGC
ACCCAGCAGGAGAAGGATCGAGACGGGTGCCCCAAGATCGTTAACCTGGG
CAGCTCCAAGACCGACCTATTCTACGAGAGAAAGAAGTACGGCTTCAAGA
AGAGATGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9748:514..1121+

>mRNA_Ecto-sp8_S_contig9748.31492.1 ID=mRNA_Ecto-sp8_S_contig9748.31492.1|Name=mRNA_Ecto-sp8_S_contig9748.31492.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=327bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9748:514..1121+ (Ectocarpus species8 EcLAC_412)
CACCTCCCCTTGCTCGTTGCTCCTCAAACAAATGTGGTTTCTGTGACTGT
GACTGTGACTGACGTTCCAGGCGATGGCAAGTGCGTGGTGTGCGACTCTT
ACGTGCGCCCCTGCACGCTAGTCCGCATCTGCGACGAGTGCAACTACGGC
TCCTTCGAGGGACGGTGCACGATCTGCGGCGGGCCCGGCATCTCGGACGC
CTATTACTGCCGCGAGTGCACCCAGCAGGAGAAGGATCGAGACGGGTGCC
CCAAGATCGTTAACCTGGGCAGCTCCAAGACCGACCTATTCTACGAGAGA
AAGAAGTACGGCTTCAAGAAGAGATGA
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