mRNA_Ecto-sp8_S_contig97477.31491.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig97477.31491.1
Unique NamemRNA_Ecto-sp8_S_contig97477.31491.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig97477.31491.1 vs. uniprot
Match: D7G099_ECTSI (Phosphodiesterase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G099_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 3.080e-49
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 1
Query:    1 LIAMVEEVVRVAQIMTEAERVCLFFVDDAADELWVAKSVDFDDAKIKIGEGLCGHAAATGGTVNVIDSYEDPRFDGRWDKQTGFITK 261
            LIAMVEEVVRVAQIMTEAERVCLFFVDDAADELWVAKSVDFDDAKIKIGEGLCGHAAATGGTVNVIDSYEDPRFDGRWDKQTGF+TK
Sbjct:  279 LIAMVEEVVRVAQIMTEAERVCLFFVDDAADELWVAKSVDFDDAKIKIGEGLCGHAAATGGTVNVIDSYEDPRFDGRWDKQTGFVTK 365          
BLAST of mRNA_Ecto-sp8_S_contig97477.31491.1 vs. uniprot
Match: D7G095_ECTSI (Phosphodiesterase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G095_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 2.600e-41
Identity = 75/87 (86.21%), Postives = 79/87 (90.80%), Query Frame = 1
Query:    1 LIAMVEEVVRVAQIMTEAERVCLFFVDDAADELWVAKSVDFDDAKIKIGEGLCGHAAATGGTVNVIDSYEDPRFDGRWDKQTGFITK 261
            LIAMVEEVV  AQ+MTEAERVCLFFVDDA  +LWVA SV F+D KIKIGEGLCGHAAATGGTVNVIDSYEDPRF GRWDKQTGF+TK
Sbjct:  289 LIAMVEEVVDAAQVMTEAERVCLFFVDDAEHKLWVATSVGFEDPKIKIGEGLCGHAAATGGTVNVIDSYEDPRFVGRWDKQTGFVTK 375          
BLAST of mRNA_Ecto-sp8_S_contig97477.31491.1 vs. uniprot
Match: A0A6H5KY22_9PHAE (Phosphodiesterase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY22_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 2.390e-35
Identity = 69/87 (79.31%), Postives = 74/87 (85.06%), Query Frame = 1
Query:    1 LIAMVEEVVRVAQIMTEAERVCLFFVDDAADELWVAKSVDFDDAKIKIGEGLCGHAAATGGTVNVIDSYEDPRFDGRWDKQTGFITK 261
            LIAMVEEVV  AQ+MTEAERV LFFVDDA  +LWVA SV F+D KIKIGEGLCGHAAATG TVNVIDS +DPR  GRWDKQTGF+ K
Sbjct:  274 LIAMVEEVVHAAQVMTEAERVRLFFVDDAEHKLWVATSVGFEDPKIKIGEGLCGHAAATGRTVNVIDSCKDPRSVGRWDKQTGFVAK 360          
BLAST of mRNA_Ecto-sp8_S_contig97477.31491.1 vs. uniprot
Match: A0A7V3XCS9_9BACT (GAF domain-containing sensor histidine kinase n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V3XCS9_9BACT)

HSP 1 Score: 73.9 bits (180), Expect = 1.790e-13
Identity = 32/73 (43.84%), Postives = 50/73 (68.49%), Query Frame = 1
Query:   49 EAERVCLFFVDDAADELW--VAKSVDFDDAKIKIGEGLCGHAAATGGTVNVIDSYEDPRFDGRWDKQTGFITK 261
            EAER  LF  D+   ELW  +A+  +  + ++K+GEG+ G    TG T+N+ID+Y+DPRF+  +D++TG+ TK
Sbjct:   36 EAERSTLFLYDEERKELWSKIAQESEIKEIRLKLGEGIAGSVMKTGQTLNIIDAYQDPRFNNAFDEKTGYFTK 108          
BLAST of mRNA_Ecto-sp8_S_contig97477.31491.1 vs. uniprot
Match: A0A0S4N9J5_9BACT (Signal transduction histidine kinase n=1 Tax=Candidatus Thermokryptus mobilis TaxID=1643428 RepID=A0A0S4N9J5_9BACT)

HSP 1 Score: 68.6 bits (166), Expect = 1.410e-11
Identity = 29/82 (35.37%), Postives = 56/82 (68.29%), Query Frame = 1
Query:   22 VVRVAQIMTEAERVCLFFVDDAADELW--VAKSVDFDDAKIKIGEGLCGHAAATGGTVNVIDSYEDPRFDGRWDKQTGFITK 261
            ++ +A  +T A+R  ++ VD+ + E+W  V +  +  + ++KIG+G+ G+ A TG  +N++D+Y+DPRF+   D++TG+ TK
Sbjct:  180 ILEIALEITNADRGTVYLVDEMSGEIWSKVLQGDEIREIRLKIGQGIAGYVAQTGEVINLVDAYQDPRFNPEIDRKTGYRTK 261          
BLAST of mRNA_Ecto-sp8_S_contig97477.31491.1 vs. uniprot
Match: A0A0P1MNV1_9BACT (Signal transduction histidine kinase n=1 Tax=Candidatus Chrysopegis kryptomonas TaxID=1633643 RepID=A0A0P1MNV1_9BACT)

HSP 1 Score: 67.4 bits (163), Expect = 3.580e-11
Identity = 29/82 (35.37%), Postives = 55/82 (67.07%), Query Frame = 1
Query:   22 VVRVAQIMTEAERVCLFFVDDAADELW--VAKSVDFDDAKIKIGEGLCGHAAATGGTVNVIDSYEDPRFDGRWDKQTGFITK 261
            ++ +A  +T A+R  ++ VD+   E+W  V +  +  + ++ +G+G+ G+ A TG T+N+ID+Y+DPRF+   D++TG+ TK
Sbjct:  180 ILEIALEITNADRGTVYLVDELTGEIWSKVLQGDELTEIRLPLGKGIAGYVAQTGETINLIDAYQDPRFNPEVDRKTGYRTK 261          
BLAST of mRNA_Ecto-sp8_S_contig97477.31491.1 vs. uniprot
Match: A0A6L9J1I7_9CHLR (SpoIIE family protein phosphatase (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L9J1I7_9CHLR)

HSP 1 Score: 66.6 bits (161), Expect = 6.510e-11
Identity = 32/74 (43.24%), Postives = 48/74 (64.86%), Query Frame = 1
Query:   52 AERVCLFFVDDAADELWVAKSVD----FDDAKIKIGEGLCGHAAATGGTVNVIDSYEDPRFDGRWDKQTGFITK 261
            AER  L+ VD+ A+ELW    +D      + +++IGEG+ GH AA+G  VN+ D Y DPRF+  +D+ +GF T+
Sbjct:   61 AERGTLYLVDEQANELWSRVLMDQEGHLSEIRMRIGEGIAGHVAASGEVVNIPDVYADPRFNQDFDRTSGFRTR 134          
BLAST of mRNA_Ecto-sp8_S_contig97477.31491.1 vs. uniprot
Match: A0A2E9QGU6_9SPIO (Guanylate cyclase domain-containing protein n=1 Tax=Spirochaetaceae bacterium TaxID=1898206 RepID=A0A2E9QGU6_9SPIO)

HSP 1 Score: 66.6 bits (161), Expect = 6.760e-11
Identity = 29/70 (41.43%), Postives = 45/70 (64.29%), Query Frame = 1
Query:   52 AERVCLFFVDDAADELWVAKSVDFDDAKIKIGEGLCGHAAATGGTVNVIDSYEDPRFDGRWDKQTGFITK 261
            A+R  LF +D   +ELW   +   ++ +IK+ EG+ GH A TG TVN+ D+Y+D RF   +D +TG+ T+
Sbjct:   74 ADRSTLFLIDREKEELWSTVAQGSEEIRIKLSEGISGHVATTGETVNIEDAYQDARFSRDYDLKTGYRTR 143          
BLAST of mRNA_Ecto-sp8_S_contig97477.31491.1 vs. uniprot
Match: A0A2P6MX58_9EUKA (Phosphodiesterase n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MX58_9EUKA)

HSP 1 Score: 65.9 bits (159), Expect = 1.300e-10
Identity = 33/86 (38.37%), Postives = 59/86 (68.60%), Query Frame = 1
Query:   10 MVEEVVRVAQIMTEAERVCLFFVDDAADELW--VAKSVDFDDAKIKIGEGLCGHAAATGGTVNVIDSYEDPRFDGRWDKQTGFITK 261
            +++ ++R A+ +  AER  LF +D+  +EL   VA+  D ++ ++ +  G+ GH AATG T+N+I++Y+DPRF+   DK+TG+ T+
Sbjct:  560 LIQFIMRRARELVNAERCSLFLMDEDHNELRSKVAEGTD-EEIRVPMNMGIAGHVAATGSTLNIIEAYDDPRFNIEVDKRTGYKTR 644          
BLAST of mRNA_Ecto-sp8_S_contig97477.31491.1 vs. uniprot
Match: A0A3N5T1K1_9CHLR (GAF domain-containing protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3N5T1K1_9CHLR)

HSP 1 Score: 65.1 bits (157), Expect = 2.340e-10
Identity = 30/74 (40.54%), Postives = 47/74 (63.51%), Query Frame = 1
Query:   52 AERVCLFFVDDAADELWVAKSVD----FDDAKIKIGEGLCGHAAATGGTVNVIDSYEDPRFDGRWDKQTGFITK 261
            AER  ++ +D+   ELW    ++      + ++K+GEG+ GH AATG  VN+ D+Y D RF+ ++DK TGF T+
Sbjct:  189 AERGTIYLLDEERGELWSKVLLEQIGPLSEIRVKVGEGISGHVAATGDVVNIPDAYADTRFNPQFDKVTGFRTR 262          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig97477.31491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G099_ECTSI3.080e-4998.85Phosphodiesterase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
D7G095_ECTSI2.600e-4186.21Phosphodiesterase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5KY22_9PHAE2.390e-3579.31Phosphodiesterase n=1 Tax=Ectocarpus sp. CCAP 1310... [more]
A0A7V3XCS9_9BACT1.790e-1343.84GAF domain-containing sensor histidine kinase n=1 ... [more]
A0A0S4N9J5_9BACT1.410e-1135.37Signal transduction histidine kinase n=1 Tax=Candi... [more]
A0A0P1MNV1_9BACT3.580e-1135.37Signal transduction histidine kinase n=1 Tax=Candi... [more]
A0A6L9J1I7_9CHLR6.510e-1143.24SpoIIE family protein phosphatase (Fragment) n=1 T... [more]
A0A2E9QGU6_9SPIO6.760e-1141.43Guanylate cyclase domain-containing protein n=1 Ta... [more]
A0A2P6MX58_9EUKA1.300e-1038.37Phosphodiesterase n=1 Tax=Planoprotostelium fungiv... [more]
A0A3N5T1K1_9CHLR2.340e-1040.54GAF domain-containing protein n=1 Tax=Chloroflexi ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig97477contigEcto-sp8_S_contig97477:14..274 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score171.8
Seed ortholog evalue1.4e-40
Seed eggNOG ortholog2880.D7G099
Model size261
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.3',5'-cyclic-nucleotide phosphodiesterase activity
EggNOG OGsKOG3689@1,KOG3689@2759
Cds size252
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145340.4703717-CDS-Ecto-sp8_S_contig97477:13..2651681145340.4703717-CDS-Ecto-sp8_S_contig97477:13..265Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig97477 14..265 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145340.4836745-UTR-Ecto-sp8_S_contig97477:265..2741681145340.4836745-UTR-Ecto-sp8_S_contig97477:265..274Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig97477 266..274 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig97477.31491.1prot_Ecto-sp8_S_contig97477.31491.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig97477 14..265 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig97477.31491.1

>prot_Ecto-sp8_S_contig97477.31491.1 ID=prot_Ecto-sp8_S_contig97477.31491.1|Name=mRNA_Ecto-sp8_S_contig97477.31491.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=84bp
MVEEVVRVAQIMTEAERVCLFFVDDAADELWVAKSVDFDDAKIKIGEGLC
GHAAATGGTVNVIDSYEDPRFDGRWDKQTGFITK
back to top

mRNA from alignment at Ecto-sp8_S_contig97477:14..274-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig97477.31491.1 ID=mRNA_Ecto-sp8_S_contig97477.31491.1|Name=mRNA_Ecto-sp8_S_contig97477.31491.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=261bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97477:14..274- (Ectocarpus species8 EcLAC_412)
CTGATCGCGATGGTCGAGGAGGTTGTCCGTGTTGCACAGATAATGACGGA AGCGGAGAGGGTTTGCCTCTTCTTCGTGGACGACGCGGCGGACGAGCTGT GGGTGGCCAAGTCAGTTGACTTCGATGACGCCAAGATCAAGATCGGGGAA GGCTTGTGCGGGCACGCGGCGGCGACCGGAGGGACCGTGAACGTGATCGA CAGCTACGAGGACCCCCGCTTCGACGGGCGGTGGGACAAGCAGACCGGCT TTATCACCAAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig97477:14..274-

>mRNA_Ecto-sp8_S_contig97477.31491.1 ID=mRNA_Ecto-sp8_S_contig97477.31491.1|Name=mRNA_Ecto-sp8_S_contig97477.31491.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97477:14..274- (Ectocarpus species8 EcLAC_412)
ATGGTCGAGGAGGTTGTCCGTGTTGCACAGATAATGACGGAAGCGGAGAG
GGTTTGCCTCTTCTTCGTGGACGACGCGGCGGACGAGCTGTGGGTGGCCA
AGTCAGTTGACTTCGATGACGCCAAGATCAAGATCGGGGAAGGCTTGTGC
GGGCACGCGGCGGCGACCGGAGGGACCGTGAACGTGATCGACAGCTACGA
GGACCCCCGCTTCGACGGGCGGTGGGACAAGCAGACCGGCTTTATCACCA
AG
back to top