mRNA_Ecto-sp8_S_contig97461.31488.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig97461.31488.1
Unique NamemRNA_Ecto-sp8_S_contig97461.31488.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig97461.31488.1 vs. uniprot
Match: A0A6H5K675_9PHAE (ATPase_AAA_core domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K675_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 1.740e-52
Identity = 85/88 (96.59%), Postives = 85/88 (96.59%), Query Frame = 1 
Query:    1 IISYKRYKLGDVKDFDSLFFPEKEKLLRALENFEAKRGRYAIRGYPHKLGLLLHGPPGTGKTSLIKALACRTGRHIIQVPLGRIKTNE 264
            IISYKRYKLGDVKDFDSLFFPEKEKLLR LENFEAKRGRYAIRGYPHKLG LLHGPPGTGKTSLIKALACRT RHIIQVPLGRIKTNE
Sbjct:   23 IISYKRYKLGDVKDFDSLFFPEKEKLLRVLENFEAKRGRYAIRGYPHKLGFLLHGPPGTGKTSLIKALACRTRRHIIQVPLGRIKTNE 110
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BLAST of mRNA_Ecto-sp8_S_contig97461.31488.1 vs. uniprot
Match: D7FQ71_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ71_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 3.670e-51
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 1 
Query:    4 ISYKRYKLGDVKDFDSLFFPEKEKLLRALENFEAKRGRYAIRGYPHKLGLLLHGPPGTGKTSLIKALACRTGRHIIQVPLGRIKTNE 264
            I YKRYKLGDVKDFDSLFFPEKE+LLRALENFEAKRGRYAIRGYPHKLG LLHGPPGTGKTSLIKALACRTGRHIIQVPLGRIKTNE
Sbjct:   47 IIYKRYKLGDVKDFDSLFFPEKEQLLRALENFEAKRGRYAIRGYPHKLGFLLHGPPGTGKTSLIKALACRTGRHIIQVPLGRIKTNE 133
[Close]
BLAST of mRNA_Ecto-sp8_S_contig97461.31488.1 vs. uniprot
Match: D7FQ72_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ72_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 1.600e-49
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 1 
Query:    4 ISYKRYKLGDVKDFDSLFFPEKEKLLRALENFEAKRGRYAIRGYPHKLGLLLHGPPGTGKTSLIKALACRTGRHIIQVPLGRIKTNE 264
            I YKRYKLGDVKDFDSLFFPEKE+LLRALENFEAKRGRYAIRGYPHKLG LLHGPPGTGKTSLIKALACRTGRHIIQVPLGRIKTNE
Sbjct:  259 IIYKRYKLGDVKDFDSLFFPEKEQLLRALENFEAKRGRYAIRGYPHKLGFLLHGPPGTGKTSLIKALACRTGRHIIQVPLGRIKTNE 345
[Close]
BLAST of mRNA_Ecto-sp8_S_contig97461.31488.1 vs. uniprot
Match: A0A6H5K8D9_9PHAE (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D9_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 4.890e-47
Identity = 79/87 (90.80%), Postives = 84/87 (96.55%), Query Frame = 1 
Query:    4 ISYKRYKLGDVKDFDSLFFPEKEKLLRALENFEAKRGRYAIRGYPHKLGLLLHGPPGTGKTSLIKALACRTGRHIIQVPLGRIKTNE 264
            + YKRY+LGDVKDFDSLFFPEKE+LLR LENFEAKRGRYAIRGYPHKLGLLLHGPPGTGKTSLIKALACRTGRHIIQVPLGR+ TN+
Sbjct:  321 LRYKRYRLGDVKDFDSLFFPEKEQLLRVLENFEAKRGRYAIRGYPHKLGLLLHGPPGTGKTSLIKALACRTGRHIIQVPLGRVNTNQ 407
[Close]
BLAST of mRNA_Ecto-sp8_S_contig97461.31488.1 vs. uniprot
Match: D8LH94_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH94_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 8.690e-39
Identity = 66/85 (77.65%), Postives = 77/85 (90.59%), Query Frame = 1 
Query:   10 YKRYKLGDVKDFDSLFFPEKEKLLRALENFEAKRGRYAIRGYPHKLGLLLHGPPGTGKTSLIKALACRTGRHIIQVPLGRIKTNE 264
            YKRY+L D KDFDSLFFPEK+ LLR L++FE K G+YAI+GYPHKLGLLLHGPPGTGKTS+IKALAC TGR+++ VPLGRIKTN+
Sbjct:  250 YKRYRLSDGKDFDSLFFPEKDALLRILQHFEDKSGKYAIKGYPHKLGLLLHGPPGTGKTSMIKALACHTGRNVVNVPLGRIKTNQ 334
[Close]
BLAST of mRNA_Ecto-sp8_S_contig97461.31488.1 vs. uniprot
Match: A0A7S4EVE5_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4EVE5_CHRCT)

HSP 1 Score: 129 bits (323), Expect = 1.920e-33
Identity = 60/85 (70.59%), Postives = 68/85 (80.00%), Query Frame = 1 
Query:   10 YKRYKLGDVKDFDSLFFPEKEKLLRALENFEAKRGRYAIRGYPHKLGLLLHGPPGTGKTSLIKALACRTGRHIIQVPLGRIKTNE 264
            YKRYKL D K F SLFFPEKE +L+ L +F+ K G+Y + GYPHKLGLLLHGPPGTGKTSLIKALA  TGR II +PL RI TN+
Sbjct:   67 YKRYKLSDQKTFKSLFFPEKESILKLLSDFQQKAGKYGVEGYPHKLGLLLHGPPGTGKTSLIKALAQHTGRSIINIPLARINTNQ 151
[Close]
BLAST of mRNA_Ecto-sp8_S_contig97461.31488.1 vs. uniprot
Match: A0A7S4B551_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B551_CHRCT)

HSP 1 Score: 129 bits (323), Expect = 7.430e-33
Identity = 60/85 (70.59%), Postives = 68/85 (80.00%), Query Frame = 1 
Query:   10 YKRYKLGDVKDFDSLFFPEKEKLLRALENFEAKRGRYAIRGYPHKLGLLLHGPPGTGKTSLIKALACRTGRHIIQVPLGRIKTNE 264
            YKRYKL D K F SLFFPEKE +L+ L +F+ K G+Y + GYPHKLGLLLHGPPGTGKTSLIKALA  TGR II +PL RI TN+
Sbjct:  267 YKRYKLSDQKTFKSLFFPEKESILKLLSDFQQKAGKYGVEGYPHKLGLLLHGPPGTGKTSLIKALAQHTGRSIINIPLARINTNQ 351
[Close]
BLAST of mRNA_Ecto-sp8_S_contig97461.31488.1 vs. uniprot
Match: A0A7S1U3S3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3S3_9STRA)

HSP 1 Score: 126 bits (317), Expect = 9.750e-33
Identity = 58/85 (68.24%), Postives = 72/85 (84.71%), Query Frame = 1 
Query:   10 YKRYKLGDVKDFDSLFFPEKEKLLRALENFEAKRGRYAIRGYPHKLGLLLHGPPGTGKTSLIKALACRTGRHIIQVPLGRIKTNE 264
            YKRYKL + K F++LFFPEK++LL+ LE+F+AK G+Y I GYPHKLGLLLHGPPGTGKTSLIKA+A  T R+I+ + L RIKTN+
Sbjct:  282 YKRYKLSEEKTFNALFFPEKDQLLKLLEHFQAKTGKYEIEGYPHKLGLLLHGPPGTGKTSLIKAMAIHTRRNIVSINLSRIKTNQ 366
[Close]
BLAST of mRNA_Ecto-sp8_S_contig97461.31488.1 vs. uniprot
Match: A0A7S3FA13_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3FA13_9EUKA)

HSP 1 Score: 127 bits (319), Expect = 2.000e-32
Identity = 59/86 (68.60%), Postives = 72/86 (83.72%), Query Frame = 1 
Query:    7 SYKRYKLGDVKDFDSLFFPEKEKLLRALENFEAKRGRYAIRGYPHKLGLLLHGPPGTGKTSLIKALACRTGRHIIQVPLGRIKTNE 264
            +YKRY+L D+K FDSLFFPEK+ +LR L +FE K G+Y++ G+PHKLGLLLHGPPGTGKTSLIKALA  TGR II V L +I+TN+
Sbjct:  246 AYKRYELSDMKTFDSLFFPEKDLILRLLRDFEGKEGKYSVAGFPHKLGLLLHGPPGTGKTSLIKALAHHTGRSIINVSLSQIETNQ 331
[Close]
BLAST of mRNA_Ecto-sp8_S_contig97461.31488.1 vs. uniprot
Match: A0A8J5Y1R3_DIALT (AAA domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5Y1R3_DIALT)

HSP 1 Score: 127 bits (319), Expect = 2.920e-32
Identity = 63/86 (73.26%), Postives = 67/86 (77.91%), Query Frame = 1 
Query:    7 SYKRYKLGDVKDFDSLFFPEKEKLLRALENFEAKRGRYAIRGYPHKLGLLLHGPPGTGKTSLIKALACRTGRHIIQVPLGRIKTNE 264
            SYKRY+L D K FDSLFF +KE LL  L NF  K GRYAI GYPHKLGLLLHGPPGTGKTSLIKALA  T R I+ VPL RI TN+
Sbjct:  278 SYKRYRLSDEKTFDSLFFAQKETLLHILANFAKKSGRYAISGYPHKLGLLLHGPPGTGKTSLIKALAHHTQRSIVNVPLSRISTNQ 363
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig97461.31488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K675_9PHAE1.740e-5296.59ATPase_AAA_core domain-containing protein n=1 Tax=... [more]
D7FQ71_ECTSI3.670e-5196.55AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FQ72_ECTSI1.600e-4996.55AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K8D9_9PHAE4.890e-4790.80AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
D8LH94_ECTSI8.690e-3977.65AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S4EVE5_CHRCT1.920e-3370.59Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]
A0A7S4B551_CHRCT7.430e-3370.59Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]
A0A7S1U3S3_9STRA9.750e-3368.24Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S3FA13_9EUKA2.000e-3268.60Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A8J5Y1R3_DIALT2.920e-3273.26AAA domain-containing protein n=2 Tax=Diacronema l... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig97461contigEcto-sp8_S_contig97461:305..568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score176.8
Seed ortholog evalue4.5e-42
Seed eggNOG ortholog2880.D7FQ71
Model size264
KEGG rclassRC00037,RC00041
KEGG koko:K00679,ko:K08900
KEGG ReactionR05333
KEGG Pathwayko00561,map00561
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.respiratory chain complex III assembly
EggNOG OGsCOG0465@1,KOG0743@2759
EC2.3.1.158
Cds size264
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145340.296841-CDS-Ecto-sp8_S_contig97461:304..5681681145340.296841-CDS-Ecto-sp8_S_contig97461:304..568Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig97461 305..568 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig97461.31488.1prot_Ecto-sp8_S_contig97461.31488.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig97461 305..568 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig97461.31488.1

>prot_Ecto-sp8_S_contig97461.31488.1 ID=prot_Ecto-sp8_S_contig97461.31488.1|Name=mRNA_Ecto-sp8_S_contig97461.31488.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=88bp
IISYKRYKLGDVKDFDSLFFPEKEKLLRALENFEAKRGRYAIRGYPHKLG
LLLHGPPGTGKTSLIKALACRTGRHIIQVPLGRIKTNE
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mRNA from alignment at Ecto-sp8_S_contig97461:305..568+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig97461.31488.1 ID=mRNA_Ecto-sp8_S_contig97461.31488.1|Name=mRNA_Ecto-sp8_S_contig97461.31488.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=264bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97461:305..568+ (Ectocarpus species8 EcLAC_412)
ATCATCAGCTACAAGCGCTACAAGCTGGGCGACGTGAAGGACTTCGACTC
CCTCTTCTTCCCGGAGAAGGAAAAACTGCTCAGGGCGCTGGAGAATTTCG
AGGCCAAGAGGGGCAGGTACGCCATCAGGGGCTACCCGCACAAGCTCGGT
CTTCTCCTCCACGGGCCCCCCGGCACCGGAAAGACGAGCCTCATCAAGGC
GCTCGCGTGTCGGACGGGGAGGCACATCATCCAGGTTCCCCTGGGCCGGA
TCAAAACCAATGAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig97461:305..568+

>mRNA_Ecto-sp8_S_contig97461.31488.1 ID=mRNA_Ecto-sp8_S_contig97461.31488.1|Name=mRNA_Ecto-sp8_S_contig97461.31488.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=264bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97461:305..568+ (Ectocarpus species8 EcLAC_412)
ATCATCAGCTACAAGCGCTACAAGCTGGGCGACGTGAAGGACTTCGACTC
CCTCTTCTTCCCGGAGAAGGAAAAACTGCTCAGGGCGCTGGAGAATTTCG
AGGCCAAGAGGGGCAGGTACGCCATCAGGGGCTACCCGCACAAGCTCGGT
CTTCTCCTCCACGGGCCCCCCGGCACCGGAAAGACGAGCCTCATCAAGGC
GCTCGCGTGTCGGACGGGGAGGCACATCATCCAGGTTCCCCTGGGCCGGA
TCAAAACCAATGAG
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