mRNA_Ecto-sp8_S_contig97451.31486.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig97451.31486.1
Unique NamemRNA_Ecto-sp8_S_contig97451.31486.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig97451.31486.1 vs. uniprot
Match: D7FVJ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVJ1_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 5.600e-36
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1
Query:    1 GCTEEAKARDLTSKLGVQVHRSMVVLSHSPMRALAPEYSGKRVMVLGSSAKKIAEEDLGLLDTV 192
            GCTEEAKARDLTSKLGVQVHRSMVVLSHSPMRALAPEYSGKRVMVLGSSAKKIAEEDLGLLDTV
Sbjct:   41 GCTEEAKARDLTSKLGVQVHRSMVVLSHSPMRALAPEYSGKRVMVLGSSAKKIAEEDLGLLDTV 104          
BLAST of mRNA_Ecto-sp8_S_contig97451.31486.1 vs. uniprot
Match: A0A6H5K396_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K396_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 1.270e-31
Identity = 62/64 (96.88%), Postives = 62/64 (96.88%), Query Frame = 1
Query:    1 GCTEEAKARDLTSKLGVQVHRSMVVLSHSPMRALAPEYSGKRVMVLGSSAKKIAEEDLGLLDTV 192
            GCTEEAKARDLTSKLGVQVHRSMV LSHSPMRALA EYSGKRVMVLGSSAKKIAEEDLGLLDTV
Sbjct:   72 GCTEEAKARDLTSKLGVQVHRSMVALSHSPMRALASEYSGKRVMVLGSSAKKIAEEDLGLLDTV 135          
BLAST of mRNA_Ecto-sp8_S_contig97451.31486.1 vs. uniprot
Match: A0A0L0H9B8_SPIPD (TIGR01456 family HAD hydrolase n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0H9B8_SPIPD)

HSP 1 Score: 62.8 bits (151), Expect = 5.570e-10
Identity = 31/64 (48.44%), Postives = 40/64 (62.50%), Query Frame = 1
Query:    1 GCTEEAKARDLTSKLGVQVHRSMVVLSHSPMRALAPEYSGKRVMVLGSSAKKIAEEDLGLLDTV 192
            G +E +KA  LT KLG+++H S +VLSHSPMR LAP+Y  K V V+G    K   +  G  D V
Sbjct:   74 GESEASKAHKLTQKLGIEIHPSQIVLSHSPMRHLAPQYKNKLVHVVGPDECKNVAQSYGFSDVV 137          
BLAST of mRNA_Ecto-sp8_S_contig97451.31486.1 vs. uniprot
Match: A0A1Y1WLK1_9FUNG (HAD hydrolase n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1WLK1_9FUNG)

HSP 1 Score: 59.3 bits (142), Expect = 9.830e-9
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 1
Query:    1 GCTEEAKARDLTSKLGVQVHRSMVVLSHSPMRALAPEYSGKRVMVLGSSAKKIAE 165
            G TE AKA D++ +LGV++    V+LSHSPM+ALA +YS K V+V+G    + AE
Sbjct:   87 GVTEAAKAADISRRLGVEIKPEQVILSHSPMQALAEKYSDKHVLVVGGVQHRCAE 141          
BLAST of mRNA_Ecto-sp8_S_contig97451.31486.1 vs. uniprot
Match: A0A1Y1YVF2_9FUNG (HAD-superfamily hydrolase n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YVF2_9FUNG)

HSP 1 Score: 54.7 bits (130), Expect = 4.260e-7
Identity = 26/59 (44.07%), Postives = 37/59 (62.71%), Query Frame = 1
Query:    1 GCTEEAKARDLTSKLGVQVHRSMVVLSHSPMRALAPEYSGKRVMVLGSSAKKIAEEDLG 177
            G TEEAKA DL SK+G +V +  ++LSHSP++A +  Y  + V+V+G  A K      G
Sbjct:   78 GLTEEAKAADLASKIGFEVTKEQIILSHSPLKAWSRRYEEEPVLVIGRDACKEVAHSYG 136          
BLAST of mRNA_Ecto-sp8_S_contig97451.31486.1 vs. uniprot
Match: A0A088S1E6_9TRYP (Uncharacterized protein n=4 Tax=Viannia TaxID=37616 RepID=A0A088S1E6_9TRYP)

HSP 1 Score: 51.2 bits (121), Expect = 7.240e-6
Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 1
Query:    1 GCTEEAKARDLTSKLGVQVHRSMVVLSHSPMRALAPEYSGKRVMVLGS-SAKKIAEE 168
            G +E  KA +L++ LG  +    V+LSHSPMR L PEY  +RV+V+GS +   IA E
Sbjct:  230 GKSEAGKAEELSALLGCHIAARQVLLSHSPMRLLVPEYGEERVLVVGSPNCASIARE 286          
BLAST of mRNA_Ecto-sp8_S_contig97451.31486.1 vs. uniprot
Match: A0A1X2GYB1_9FUNG (HAD-superfamily hydrolase n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GYB1_9FUNG)

HSP 1 Score: 49.7 bits (117), Expect = 2.480e-5
Identity = 21/47 (44.68%), Postives = 34/47 (72.34%), Query Frame = 1
Query:    1 GCTEEAKARDLTSKLGVQVHRSMVVLSHSPMRALAPEYSGKRVMVLG 141
            G TE +KA  ++  +GV++    V++SHSPM+ALA +Y  +RV+V+G
Sbjct:   67 GMTEASKAEQISDMVGVKIDPDQVIMSHSPMQALAKKYKERRVLVVG 113          
BLAST of mRNA_Ecto-sp8_S_contig97451.31486.1 vs. uniprot
Match: A0A835WH65_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WH65_9CHLO)

HSP 1 Score: 49.7 bits (117), Expect = 2.530e-5
Identity = 26/47 (55.32%), Postives = 32/47 (68.09%), Query Frame = 1
Query:    1 GCTEEAKARDLTSKLGVQVHRSMVVLSHSPMRALAPEYSGKRVMVLG 141
            G  E  KA  L+S LGVQV  S V+LSH+PMR LAP+ +G  V+V G
Sbjct:  126 GVCEARKAAQLSSWLGVQVAPSQVILSHTPMRDLAPQLAGAPVLVSG 172          
BLAST of mRNA_Ecto-sp8_S_contig97451.31486.1 vs. uniprot
Match: A0A2R5GVK3_9STRA (Haloacid dehalogenase-like hydrolase domain-containing 5 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GVK3_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 3.380e-5
Identity = 24/47 (51.06%), Postives = 32/47 (68.09%), Query Frame = 1
Query:    1 GCTEEAKARDLTSKLGVQVHRSMVVLSHSPMRALAPEYSGKRVMVLG 141
            G  E  +AR L+ +L V V  + VVL+HSPM+ L PE+  KRVM+LG
Sbjct:   51 GHLESVRARRLSDRLEVPVDPAQVVLAHSPMQQLVPEFGKKRVMILG 97          
BLAST of mRNA_Ecto-sp8_S_contig97451.31486.1 vs. uniprot
Match: E9AFQ9_LEIMA (Uncharacterized protein n=9 Tax=Leishmania TaxID=38568 RepID=E9AFQ9_LEIMA)

HSP 1 Score: 49.3 bits (116), Expect = 3.470e-5
Identity = 22/46 (47.83%), Postives = 34/46 (73.91%), Query Frame = 1
Query:    7 TEEAKARDLTSKLGVQVHRSMVVLSHSPMRALAPEYSGKRVMVLGS 144
            +E  KA +L++ LG  +  + V+L+HSPMR LAPEY  +RV+V+G+
Sbjct:  232 SEADKAEELSALLGCDISANQVLLAHSPMRLLAPEYGEERVLVVGA 277          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig97451.31486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7FVJ1_ECTSI5.600e-36100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K396_9PHAE1.270e-3196.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0L0H9B8_SPIPD5.570e-1048.44TIGR01456 family HAD hydrolase n=2 Tax=Spizellomyc... [more]
A0A1Y1WLK1_9FUNG9.830e-950.91HAD hydrolase n=1 Tax=Linderina pennispora TaxID=6... [more]
A0A1Y1YVF2_9FUNG4.260e-744.07HAD-superfamily hydrolase n=1 Tax=Basidiobolus mer... [more]
A0A088S1E6_9TRYP7.240e-647.37Uncharacterized protein n=4 Tax=Viannia TaxID=3761... [more]
A0A1X2GYB1_9FUNG2.480e-544.68HAD-superfamily hydrolase n=1 Tax=Hesseltinella ve... [more]
A0A835WH65_9CHLO2.530e-555.32Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A2R5GVK3_9STRA3.380e-551.06Haloacid dehalogenase-like hydrolase domain-contai... [more]
E9AFQ9_LEIMA3.470e-547.83Uncharacterized protein n=9 Tax=Leishmania TaxID=3... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig97451contigEcto-sp8_S_contig97451:274..465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score125.9
Seed ortholog evalue6.6e-27
Seed eggNOG ortholog2880.D7FVJ1
Preferred nameCECR5
Model size192
KEGG rclassRC00055,RC00523
KEGG koko:K22503
KEGG ReactionR05577
KEGG Pathwayko00970,map00970
KEGG ModuleM00359
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006793,GO:0006796,GO:0006996,GO:0007005,GO:0007006,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0008808,GO:0009058,GO:0009987,GO:0016043,GO:0016740,GO:0016772,GO:0016780,GO:0016787,GO:0019637,GO:0030572,GO:0032048,GO:0032049,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0045017,GO:0046471,GO:0046474,GO:0046486,GO:0061024,GO:0071704,GO:0071840,GO:0090407,GO:1901576
Exons1
EggNOG free text desc.glycerophospholipid biosynthetic process
EggNOG OGsCOG0647@1,KOG1618@2759
Ec32 ortholog descriptionHAD-like domain
Ec32 orthologEc-05_006050.2
EC6.1.1.12
Cds size192
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01007,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145340.184676-CDS-Ecto-sp8_S_contig97451:273..4651681145340.184676-CDS-Ecto-sp8_S_contig97451:273..465Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig97451 274..465 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig97451.31486.1prot_Ecto-sp8_S_contig97451.31486.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig97451 274..465 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig97451.31486.1

>prot_Ecto-sp8_S_contig97451.31486.1 ID=prot_Ecto-sp8_S_contig97451.31486.1|Name=mRNA_Ecto-sp8_S_contig97451.31486.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=64bp
GCTEEAKARDLTSKLGVQVHRSMVVLSHSPMRALAPEYSGKRVMVLGSSA
KKIAEEDLGLLDTV
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mRNA from alignment at Ecto-sp8_S_contig97451:274..465+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig97451.31486.1 ID=mRNA_Ecto-sp8_S_contig97451.31486.1|Name=mRNA_Ecto-sp8_S_contig97451.31486.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=192bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97451:274..465+ (Ectocarpus species8 EcLAC_412)
GGCTGCACGGAGGAGGCGAAGGCGAGAGACCTGACCTCAAAGTTGGGAGT GCAAGTGCACCGATCGATGGTGGTTTTGTCGCACTCTCCGATGAGGGCGC TGGCACCGGAATATTCCGGGAAAAGGGTGATGGTGCTGGGGTCTTCGGCG AAGAAAATAGCCGAGGAGGACCTCGGCCTGCTAGACACGGTT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig97451:274..465+

>mRNA_Ecto-sp8_S_contig97451.31486.1 ID=mRNA_Ecto-sp8_S_contig97451.31486.1|Name=mRNA_Ecto-sp8_S_contig97451.31486.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=192bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97451:274..465+ (Ectocarpus species8 EcLAC_412)
GGCTGCACGGAGGAGGCGAAGGCGAGAGACCTGACCTCAAAGTTGGGAGT
GCAAGTGCACCGATCGATGGTGGTTTTGTCGCACTCTCCGATGAGGGCGC
TGGCACCGGAATATTCCGGGAAAAGGGTGATGGTGCTGGGGTCTTCGGCG
AAGAAAATAGCCGAGGAGGACCTCGGCCTGCTAGACACGGTT
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