mRNA_Ecto-sp8_S_contig97448.31485.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig97448.31485.1
Unique NamemRNA_Ecto-sp8_S_contig97448.31485.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig97448.31485.1 vs. uniprot
Match: D8LPR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPR0_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 3.070e-35
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:    1 NKFLNGVFAPVHEENTAEECEVVGTLPEVVCGEFVRNGPNPRFMPKGGYHWFDGLGMV 174
            NKFLNGVFAPVHEENTAEECEVVGTLPEVVCGEFVRNGPNPRFMPKGGYHWFDGLGMV
Sbjct:   24 NKFLNGVFAPVHEENTAEECEVVGTLPEVVCGEFVRNGPNPRFMPKGGYHWFDGLGMV 81
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BLAST of mRNA_Ecto-sp8_S_contig97448.31485.1 vs. uniprot
Match: A0A6H5KG96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG96_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 8.700e-18
Identity = 38/58 (65.52%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    1 NKFLNGVFAPVHEENTAEECEVVGTLPEVVCGEFVRNGPNPRFMPKGGYHWFDGLGMV 174
            N FL+ V+APV EE T   CEVVG LPE + G   RNGPNP+F PK GYHWFDG GMV
Sbjct:   22 NPFLSKVYAPVDEETT-RACEVVGVLPEALNGTVARNGPNPKFKPKAGYHWFDGDGMV 78
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BLAST of mRNA_Ecto-sp8_S_contig97448.31485.1 vs. uniprot
Match: A0A8J6ZXV2_9CYAN (Dioxygenase n=1 Tax=aff. Roholtiella sp. LEGE 12411 TaxID=1828822 RepID=A0A8J6ZXV2_9CYAN)

HSP 1 Score: 83.6 bits (205), Expect = 2.470e-17
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    1 NKFLNGVFAPVHEENTAEECEVVGTLPEVVCGEFVRNGPNPRFMPKGGYHWFDGLGMV 174
            N +L+G FAPVHEE TA+  +V+G LP  + G FVRNGPNP++ P G YHWFDG GM+
Sbjct:    7 NPYLDGNFAPVHEETTADTLQVIGELPSELSGMFVRNGPNPQWSPIGQYHWFDGDGML 64
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BLAST of mRNA_Ecto-sp8_S_contig97448.31485.1 vs. uniprot
Match: A0A4R1HEC4_9PSEU (Dioxygenase n=1 Tax=Pseudonocardia endophytica TaxID=401976 RepID=A0A4R1HEC4_9PSEU)

HSP 1 Score: 83.6 bits (205), Expect = 2.530e-17
Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    1 NKFLNGVFAPVHEENTAEECEVVGTLPEVVCGEFVRNGPNPRFMPKGGYHWFDGLGMV 174
            N +L G+FAPV +E TA++ EVVG +P  + G ++RNGPNPR+ P+G YHWFDG GMV
Sbjct:   19 NPYLTGIFAPVQDEITADDLEVVGEIPRDLNGVYLRNGPNPRYAPQGRYHWFDGDGMV 76
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BLAST of mRNA_Ecto-sp8_S_contig97448.31485.1 vs. uniprot
Match: D8LGA2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGA2_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 2.650e-17
Identity = 38/58 (65.52%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    1 NKFLNGVFAPVHEENTAEECEVVGTLPEVVCGEFVRNGPNPRFMPKGGYHWFDGLGMV 174
            N FL+ V+APV EE T   CEVVG LPE + G   RNGPNP+F PK GYHWFDG GMV
Sbjct:   23 NLFLSKVYAPVDEETT-RACEVVGVLPEALNGTVARNGPNPKFKPKAGYHWFDGDGMV 79
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BLAST of mRNA_Ecto-sp8_S_contig97448.31485.1 vs. uniprot
Match: K9YG34_HALP7 (Dioxygenase n=1 Tax=Halothece sp. (strain PCC 7418) TaxID=65093 RepID=K9YG34_HALP7)

HSP 1 Score: 83.2 bits (204), Expect = 3.350e-17
Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    1 NKFLNGVFAPVHEENTAEECEVVGTLPEVVCGEFVRNGPNPRFMPKGGYHWFDGLGMV 174
            N +L G +AP+ EE TAE  +++G LP  + G FVRNGPNP+F P G YHWFDG GMV
Sbjct:    7 NPYLEGNYAPIREETTAENLKIIGELPVEISGMFVRNGPNPQFTPPGTYHWFDGDGMV 64
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BLAST of mRNA_Ecto-sp8_S_contig97448.31485.1 vs. uniprot
Match: A0A8J7K3U3_9CYAN (Dioxygenase n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A8J7K3U3_9CYAN)

HSP 1 Score: 83.2 bits (204), Expect = 3.350e-17
Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    1 NKFLNGVFAPVHEENTAEECEVVGTLPEVVCGEFVRNGPNPRFMPKGGYHWFDGLGMV 174
            N FL+G FAPV EE TA++ +++G LP  + G FVRNGPNP++ PKG YHWFDG GM+
Sbjct:    7 NPFLDGNFAPVREEITADDLKIIGELPRDLSGMFVRNGPNPQWNPKGQYHWFDGDGML 64
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BLAST of mRNA_Ecto-sp8_S_contig97448.31485.1 vs. uniprot
Match: A0A3D2JE17_9CHLR (Dioxygenase (Fragment) n=1 Tax=Ktedonobacter sp. TaxID=1932716 RepID=A0A3D2JE17_9CHLR)

HSP 1 Score: 82.8 bits (203), Expect = 3.400e-17
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    1 NKFLNGVFAPVHEENTAEECEVVGTLPEVVCGEFVRNGPNPRFMPKGGYHWFDGLGMV 174
            N +L+G  AP+H+E T +E EVVGT+P  + G F+RNGPNP+F P G YHWFDG GMV
Sbjct:    8 NPYLSGNCAPIHDELTVDELEVVGTIPVGIEGTFLRNGPNPQFTPLGRYHWFDGDGMV 65
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BLAST of mRNA_Ecto-sp8_S_contig97448.31485.1 vs. uniprot
Match: A0A6M0F004_9CYAN (Dioxygenase n=5 Tax=Cyanobacteria TaxID=1117 RepID=A0A6M0F004_9CYAN)

HSP 1 Score: 82.8 bits (203), Expect = 4.590e-17
Identity = 34/58 (58.62%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    1 NKFLNGVFAPVHEENTAEECEVVGTLPEVVCGEFVRNGPNPRFMPKGGYHWFDGLGMV 174
            N +L G FAP+ +E TA+E +++GTLP  + G FVRNGPNP+F P G YHWFDG GM+
Sbjct:    8 NPYLEGNFAPIAQEITADELQIIGTLPPELSGMFVRNGPNPQFSPLGRYHWFDGDGML 65
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BLAST of mRNA_Ecto-sp8_S_contig97448.31485.1 vs. uniprot
Match: A0A6N7I784_9ACTN (Dioxygenase n=1 Tax=Streptosporangiales bacterium TaxID=2604148 RepID=A0A6N7I784_9ACTN)

HSP 1 Score: 82.8 bits (203), Expect = 4.730e-17
Identity = 34/58 (58.62%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    1 NKFLNGVFAPVHEENTAEECEVVGTLPEVVCGEFVRNGPNPRFMPKGGYHWFDGLGMV 174
            N +L GV+APVH E TA++ E+VGT+P+ + G FVR GPNP++ P+G YHWFDG GM+
Sbjct:   17 NPYLVGVYAPVHTEITADDLEIVGTIPKDLDGVFVRTGPNPQYEPQGRYHWFDGDGML 74
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig97448.31485.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPR0_ECTSI3.070e-35100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KG96_9PHAE8.700e-1865.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J6ZXV2_9CYAN2.470e-1760.34Dioxygenase n=1 Tax=aff. Roholtiella sp. LEGE 1241... [more]
A0A4R1HEC4_9PSEU2.530e-1758.62Dioxygenase n=1 Tax=Pseudonocardia endophytica Tax... [more]
D8LGA2_ECTSI2.650e-1765.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
K9YG34_HALP73.350e-1758.62Dioxygenase n=1 Tax=Halothece sp. (strain PCC 7418... [more]
A0A8J7K3U3_9CYAN3.350e-1760.34Dioxygenase n=2 Tax=Cyanobacteria TaxID=1117 RepID... [more]
A0A3D2JE17_9CHLR3.400e-1760.34Dioxygenase (Fragment) n=1 Tax=Ktedonobacter sp. T... [more]
A0A6M0F004_9CYAN4.590e-1758.62Dioxygenase n=5 Tax=Cyanobacteria TaxID=1117 RepID... [more]
A0A6N7I784_9ACTN4.730e-1758.62Dioxygenase n=1 Tax=Streptosporangiales bacterium ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig97448contigEcto-sp8_S_contig97448:29..214 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score133.7
Seed ortholog evalue3.1e-29
Seed eggNOG ortholog2880.D8LPR0
Preferred nameCCD1
Model size186
KEGG koko:K00465,ko:K11159
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0005886,GO:0005911,GO:0006629,GO:0006720,GO:0006721,GO:0008150,GO:0008152,GO:0008300,GO:0009056,GO:0009506,GO:0009987,GO:0010436,GO:0012505,GO:0016020,GO:0016042,GO:0016108,GO:0016110,GO:0016115,GO:0016116,GO:0016118,GO:0016119,GO:0016121,GO:0016122,GO:0016124,GO:0016491,GO:0016701,GO:0016702,GO:0030054,GO:0031090,GO:0042214,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045549,GO:0046247,GO:0051213,GO:0055044,GO:0055114,GO:0071704,GO:0071944,GO:0098588,GO:0098805,GO:1901575
Exons1
EggNOG free text desc.oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
EggNOG OGsCOG3670@1,KOG1285@2759
Cds size186
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145340.1441386-CDS-Ecto-sp8_S_contig97448:28..2141681145340.1441386-CDS-Ecto-sp8_S_contig97448:28..214Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig97448 29..214 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig97448.31485.1prot_Ecto-sp8_S_contig97448.31485.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig97448 29..214 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig97448.31485.1

>prot_Ecto-sp8_S_contig97448.31485.1 ID=prot_Ecto-sp8_S_contig97448.31485.1|Name=mRNA_Ecto-sp8_S_contig97448.31485.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=62bp
NKFLNGVFAPVHEENTAEECEVVGTLPEVVCGEFVRNGPNPRFMPKGGYH
WFDGLGMVSEQ*
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mRNA from alignment at Ecto-sp8_S_contig97448:29..214-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig97448.31485.1 ID=mRNA_Ecto-sp8_S_contig97448.31485.1|Name=mRNA_Ecto-sp8_S_contig97448.31485.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=186bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97448:29..214- (Ectocarpus species8 EcLAC_412)
AACAAGTTTCTGAATGGCGTGTTCGCCCCGGTACACGAAGAGAACACCGC
CGAAGAGTGCGAGGTCGTGGGAACTCTGCCAGAGGTCGTGTGCGGGGAAT
TCGTCCGCAACGGCCCGAACCCGAGGTTCATGCCAAAGGGGGGGTACCAC
TGGTTCGACGGGCTAGGCATGGTGAGTGAACAATGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig97448:29..214-

>mRNA_Ecto-sp8_S_contig97448.31485.1 ID=mRNA_Ecto-sp8_S_contig97448.31485.1|Name=mRNA_Ecto-sp8_S_contig97448.31485.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=186bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97448:29..214- (Ectocarpus species8 EcLAC_412)
AACAAGTTTCTGAATGGCGTGTTCGCCCCGGTACACGAAGAGAACACCGC
CGAAGAGTGCGAGGTCGTGGGAACTCTGCCAGAGGTCGTGTGCGGGGAAT
TCGTCCGCAACGGCCCGAACCCGAGGTTCATGCCAAAGGGGGGGTACCAC
TGGTTCGACGGGCTAGGCATGGTGAGTGAACAATGA
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