mRNA_Ecto-sp8_S_contig9744.31483.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9744.31483.1
Unique NamemRNA_Ecto-sp8_S_contig9744.31483.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9744.31483.1 vs. uniprot
Match: D8LBZ5_ECTSI (Spindle pole body component n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBZ5_ECTSI)

HSP 1 Score: 207 bits (526), Expect = 4.360e-60
Identity = 99/101 (98.02%), Postives = 100/101 (99.01%), Query Frame = 1 
Query:    1 YWSGRYLLRPEHVIANLAGRQDKILTTGKYLNVVRQCGRRVDCPLAGPIPADPGAAGEGLYLKVIDGAYGFASRCLMDLVVREGQLLPRLESIKHYFLLDR 303
            YWSGRYLLRPEHVIANLAGRQDKILTTGKYLNVVR+CGRRVDCPLAGPIPADPGAAGEGLYLKVIDGAYGFASRCLM LVVREGQLLPRLESIKHYFLLDR
Sbjct:  860 YWSGRYLLRPEHVIANLAGRQDKILTTGKYLNVVRECGRRVDCPLAGPIPADPGAAGEGLYLKVIDGAYGFASRCLMHLVVREGQLLPRLESIKHYFLLDR 960
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BLAST of mRNA_Ecto-sp8_S_contig9744.31483.1 vs. uniprot
Match: A0A835ZJD2_9STRA (Spc98 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJD2_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.190e-25
Identity = 52/101 (51.49%), Postives = 70/101 (69.31%), Query Frame = 1 
Query:    1 YWSGRYLLRPEHVIANLAGRQDKILTTGKYLNVVRQCGRRVDCPLAGPIPADPGAAGEGLYLKVIDGAYGFASRCLMDLVVREGQLLPRLESIKHYFLLDR 303
            YW GRY ++   V + L     KILTTGKYLNVVR+CG++V CP AGPI  +     +  Y ++++ AY FASR L+D+VV E QL+ RL +IKH+FLLD+
Sbjct:  675 YWEGRYTIQQPMVASFLQAHAHKILTTGKYLNVVRECGKQVLCPHAGPITMEQSDTNDTRYGEIVEAAYAFASRTLLDVVVGECQLMARLRTIKHFFLLDQ 775
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BLAST of mRNA_Ecto-sp8_S_contig9744.31483.1 vs. uniprot
Match: A0A7S2RS01_9STRA (Spindle pole body component (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RS01_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.490e-23
Identity = 51/101 (50.50%), Postives = 65/101 (64.36%), Query Frame = 1 
Query:    1 YWSGRYLLRPEHVIANLAGRQDKILTTGKYLNVVRQCGRRVDCPLAGPIPADPGAAGEGLYLKVIDGAYGFASRCLMDLVVREGQLLPRLESIKHYFLLDR 303
            YW  R+ L+  H+   LA  Q KILTTGKYLNVVR+CGR +  P A    A    AGE  Y  +ID A+ FA   L+ L+++E QL+ RL S+KHYFLLD+
Sbjct:   28 YWETRFTLQESHIPRFLAAHQHKILTTGKYLNVVRECGRDIKAPFATDQIAFH--AGEAAYTDLIDKAFNFAGSTLLRLLMQENQLMQRLRSLKHYFLLDQ 126
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BLAST of mRNA_Ecto-sp8_S_contig9744.31483.1 vs. uniprot
Match: A0A1V9ZKY5_9STRA (Gamma-tubulin complex component n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZKY5_9STRA)

HSP 1 Score: 100 bits (248), Expect = 2.070e-22
Identity = 52/101 (51.49%), Postives = 67/101 (66.34%), Query Frame = 1 
Query:    1 YWSGRYLLRPEHVIANLAGRQDKILTTGKYLNVVRQCGRRVDCPLAGPIPADPGAAGEGLYLKVIDGAYGFASRCLMDLVVREGQLLPRLESIKHYFLLDR 303
            YW  RY LR  HV + LA   +K+LTTGKYLNV R CGRRV+CP A  IP    A     + +++D A+ +AS  L+DL+V E  L+ RL SIKHYFL+D+
Sbjct:  700 YWERRYTLRETHVPSFLARVAEKVLTTGKYLNVFRTCGRRVNCPFADTIPH---AESARRFDELVDKAHAYASALLVDLLVDEHDLMNRLRSIKHYFLMDQ 797
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BLAST of mRNA_Ecto-sp8_S_contig9744.31483.1 vs. uniprot
Match: A0A485KH80_9STRA (Aste57867_5071 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KH80_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 5.270e-22
Identity = 53/101 (52.48%), Postives = 65/101 (64.36%), Query Frame = 1 
Query:    1 YWSGRYLLRPEHVIANLAGRQDKILTTGKYLNVVRQCGRRVDCPLAGPIPADPGAAGEGLYLKVIDGAYGFASRCLMDLVVREGQLLPRLESIKHYFLLDR 303
            YW  RY LR  HV   L    +KILTTGKYLNV+R CGR V+CP A  I     A     Y ++ID A+GFASR L+D++  E  L+ RL SIKHYFL+D+
Sbjct:  710 YWEQRYTLRESHVPLFLTRFSNKILTTGKYLNVLRTCGRHVNCPFATSITH---AESVRKYDELIDNAHGFASRILVDMLRTEQDLMNRLRSIKHYFLMDQ 807
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BLAST of mRNA_Ecto-sp8_S_contig9744.31483.1 vs. uniprot
Match: A0A024URN3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024URN3_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 2.490e-21
Identity = 52/101 (51.49%), Postives = 64/101 (63.37%), Query Frame = 1 
Query:    1 YWSGRYLLRPEHVIANLAGRQDKILTTGKYLNVVRQCGRRVDCPLAGPIPADPGAAGEGLYLKVIDGAYGFASRCLMDLVVREGQLLPRLESIKHYFLLDR 303
            YW  RY LR  HV   L     KILTTGKYLNV+R CGR V+CP A  I     A     Y ++I+ A+GFASR L+D++  E  L+ RL SIKHYFL+D+
Sbjct:  723 YWEQRYTLRDAHVPLFLTRFSYKILTTGKYLNVLRTCGRHVNCPFAAAITH---AESVRKYDELIENAHGFASRILVDMLRNEQDLMKRLRSIKHYFLMDQ 820
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BLAST of mRNA_Ecto-sp8_S_contig9744.31483.1 vs. uniprot
Match: W4HBM7_9STRA (Spindle pole body component n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HBM7_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.170e-20
Identity = 51/101 (50.50%), Postives = 63/101 (62.38%), Query Frame = 1 
Query:    1 YWSGRYLLRPEHVIANLAGRQDKILTTGKYLNVVRQCGRRVDCPLAGPIPADPGAAGEGLYLKVIDGAYGFASRCLMDLVVREGQLLPRLESIKHYFLLDR 303
            YW  RY LR  HV   L     KILT+GKYLNV+R CGR V+CP A  I     A     Y ++ID A+GFAS  L+D++  E  L+ RL SIKHYFL+D+
Sbjct:  722 YWEQRYTLRESHVPLFLNRFSTKILTSGKYLNVLRTCGRHVNCPFAAVITH---AESVRKYDELIDNAHGFASHALVDMLRTEQDLMKRLRSIKHYFLMDQ 819
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BLAST of mRNA_Ecto-sp8_S_contig9744.31483.1 vs. uniprot
Match: A0A425D518_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425D518_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.180e-20
Identity = 51/101 (50.50%), Postives = 63/101 (62.38%), Query Frame = 1 
Query:    1 YWSGRYLLRPEHVIANLAGRQDKILTTGKYLNVVRQCGRRVDCPLAGPIPADPGAAGEGLYLKVIDGAYGFASRCLMDLVVREGQLLPRLESIKHYFLLDR 303
            YW  RY LR  HV   L     KILT+GKYLNV+R CGR V+CP A  I     A     Y ++ID A+GFAS  L+D++  E  L+ RL SIKHYFL+D+
Sbjct:  817 YWEQRYTLRESHVPLFLNRFSTKILTSGKYLNVLRTCGRHVNCPFAAVITH---AESVRKYDELIDNAHGFASHALVDMLRTEQDLMKRLRSIKHYFLMDQ 914
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BLAST of mRNA_Ecto-sp8_S_contig9744.31483.1 vs. uniprot
Match: A0A1W0A8B2_9STRA (Gamma-tubulin complex component n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A8B2_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.610e-20
Identity = 48/101 (47.52%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:    1 YWSGRYLLRPEHVIANLAGRQDKILTTGKYLNVVRQCGRRVDCPLAGPIPADPGAAGEGLYLKVIDGAYGFASRCLMDLVVREGQLLPRLESIKHYFLLDR 303
            YW  RY LR  HV + L     K+LTTGKYLNV R CGR V+CP A  IP    A     + ++++ A+ +AS+ L+DL+++E  L+ RL SIKHYFL+D+
Sbjct:  670 YWEQRYTLRETHVPSYLTRVAMKVLTTGKYLNVFRTCGRHVNCPFAATIPHADSAR---RFDELVEKAHAYASKLLVDLLMQEHDLMNRLRSIKHYFLMDQ 767
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BLAST of mRNA_Ecto-sp8_S_contig9744.31483.1 vs. uniprot
Match: UPI001E1DB6E9 (gamma-tubulin complex component 2-like isoform X1 n=3 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DB6E9)

HSP 1 Score: 94.0 bits (232), Expect = 2.970e-20
Identity = 49/101 (48.51%), Postives = 62/101 (61.39%), Query Frame = 1 
Query:    1 YWSGRYLLRPEHVIANLAGRQDKILTTGKYLNVVRQCGRRVDCPLAGPIPADPGAAGEGLYLKVIDGAYGFASRCLMDLVVREGQLLPRLESIKHYFLLDR 303
            YW   Y +  E +   L    DKIL TGKYLNVVRQCGR V CP A  +        E  Y + I+ AY +AS+ L+DL++ E +LL R+ SIKHYFLLD+
Sbjct:  431 YWEHHYTICRERIPVFLEQMADKILNTGKYLNVVRQCGRDVKCPNAEEVVY---TVKEKKYFEQIERAYSYASKLLLDLLIEEKELLARIRSIKHYFLLDK 528
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9744.31483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBZ5_ECTSI4.360e-6098.02Spindle pole body component n=1 Tax=Ectocarpus sil... [more]
A0A835ZJD2_9STRA1.190e-2551.49Spc98 family-domain-containing protein n=1 Tax=Tri... [more]
A0A7S2RS01_9STRA1.490e-2350.50Spindle pole body component (Fragment) n=1 Tax=Rhi... [more]
A0A1V9ZKY5_9STRA2.070e-2251.49Gamma-tubulin complex component n=1 Tax=Achlya hyp... [more]
A0A485KH80_9STRA5.270e-2252.48Aste57867_5071 protein n=1 Tax=Aphanomyces stellat... [more]
A0A024URN3_9STRA2.490e-2151.49Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
W4HBM7_9STRA1.170e-2050.50Spindle pole body component n=3 Tax=Aphanomyces as... [more]
A0A425D518_9STRA1.180e-2050.50Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A1W0A8B2_9STRA1.610e-2047.52Gamma-tubulin complex component n=1 Tax=Thraustoth... [more]
UPI001E1DB6E92.970e-2048.51gamma-tubulin complex component 2-like isoform X1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9744contigEcto-sp8_S_contig9744:5478..7117 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score209.5
Seed ortholog evalue7.1e-52
Seed eggNOG ortholog2880.D8LBZ5
Model size303
KEGG koko:K16569
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0000278,GO:0000280,GO:0000923,GO:0000928,GO:0000930,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005815,GO:0005816,GO:0005822,GO:0005824,GO:0005856,GO:0006996,GO:0007010,GO:0007017,GO:0007020,GO:0007049,GO:0007051,GO:0007052,GO:0008092,GO:0008150,GO:0008275,GO:0009987,GO:0015630,GO:0015631,GO:0016043,GO:0022402,GO:0022414,GO:0022607,GO:0031109,GO:0031122,GO:0032153,GO:0032155,GO:0032991,GO:0034622,GO:0043015,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0046785,GO:0048285,GO:0051225,GO:0051258,GO:0051321,GO:0051415,GO:0051418,GO:0065003,GO:0070925,GO:0071840,GO:0090307,GO:0097435,GO:0140014,GO:1902850,GO:1903047
Exons3
EggNOG free text desc.microtubule nucleation by interphase microtubule organizing center
EggNOG OGsKOG2001@1,KOG2001@2759
Cds size303
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145340.0309467-CDS-Ecto-sp8_S_contig9744:5477..55851681145340.0309467-CDS-Ecto-sp8_S_contig9744:5477..5585Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9744 5478..5585 +
1681145340.0450466-CDS-Ecto-sp8_S_contig9744:6406..65471681145340.0450466-CDS-Ecto-sp8_S_contig9744:6406..6547Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9744 6407..6547 +
1681145340.063274-CDS-Ecto-sp8_S_contig9744:7063..71171681145340.063274-CDS-Ecto-sp8_S_contig9744:7063..7117Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9744 7064..7117 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9744.31483.1prot_Ecto-sp8_S_contig9744.31483.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9744 5478..7117 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9744.31483.1

>prot_Ecto-sp8_S_contig9744.31483.1 ID=prot_Ecto-sp8_S_contig9744.31483.1|Name=mRNA_Ecto-sp8_S_contig9744.31483.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=101bp
YWSGRYLLRPEHVIANLAGRQDKILTTGKYLNVVRQCGRRVDCPLAGPIP
ADPGAAGEGLYLKVIDGAYGFASRCLMDLVVREGQLLPRLESIKHYFLLD
R
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mRNA from alignment at Ecto-sp8_S_contig9744:5478..7117+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9744.31483.1 ID=mRNA_Ecto-sp8_S_contig9744.31483.1|Name=mRNA_Ecto-sp8_S_contig9744.31483.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1640bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9744:5478..7117+ (Ectocarpus species8 EcLAC_412)
TACTGGTCCGGGCGTTACCTCCTGCGGCCGGAGCACGTCATCGCCAACCT
TGCCGGCCGACAGGACAAGATTCTCACCACCGGAAAATACCTCAACGTCG
TCAGGCAAGTTACCGTTACCGTACACAACATACTCACCACCAGAATACTC
CTCAACGTTGTCAGGCACCACATCATATGTACCTCAACCTTGTTAGGCAA
GTTGCCGTACACGAGATACCCCACACCAGATCATTCCTCAACGTTGTCAG
GCACCACATTATATGCACCTCAACGTTGCCAGGCAAGTTAACCGTACACA
AGATACTTCTACACCAGATTATTCCTCGACGTTGTCAGGCACCATATTAT
ACCTCAACGTTATCTGGCAAAGCACCGTACACAAGATACTTCTACACCAG
ATCATTCCTCGACGTTGTCAGGCACCACATTATATGCACCTCAACGTTGT
CAGGCGAGTTTGCTCTCACCAACGGGAGGTACAGTACCTCAGCGTTTATC
AGGCGAGATAAGGTAGGCCAAAAAAATGTGTAGACGTTGGATAGATTTGT
TGACAGCCGATGTACTCATAGTGGCTAGGCCACTCCAGTCGGATTATTAC
CCGGATATTCTTAAGAGGGACGAACGAATCATTTTCTCGGCGTCGCCAAG
CTAAATATTTCCTGCAGACCAAAGACAGCTTTGATGCATTAATTGCCCCC
CCTCACATCCTCACATCAACCAAGTATACAAGGCTACAACCACCAAAAGC
CGGCACACCCTCGAAGGGACAACGAGATCAACAACAACAAACGACAACAA
TACCAACAATCGCATCGACAACACAACCAACAAACTCTCGCCTCGCTGAA
ACAAATCAGCAAGGCTATACACGACAACAACAACAATGACAACAATCCCA
TCGACGACAACTGTAACGATAACAGGGAGTGCGGGCGACGAGTGGACTGT
CCCCTGGCCGGCCCCATCCCCGCCGACCCCGGAGCCGCGGGCGAGGGTCT
GTACTTAAAGGTCATTGATGGCGCTTACGGCTTCGCCTCTCGCTGCCTCA
TGGACCTCGTCGTTAGAGAGGTGGGTGAGGCTTGCAAAGCTATATCATGA
GGCTGCTGTGTGTACTTTGTATGGATACCATAGATTGTTCTTTCTAGTTC
GTTGAGTGTCGCTGGGCTCTTGGAGTGAAAAATGCATTTTGTTTTTTTTT
GCAATCCTGGTGTGATTCATCTGCTTCGTTCAGTAAACAAATTTGGGTCG
AGGCTCAATTTCTTCTTCGTCAACACCGTCGAGTGTCGGTATCTATATCA
TTATATAGAGTTTAGTGTAGGGTCCACCTCTGAGCTATGTTTCTTGGACC
TATTTTCTGATTTTTCGTGAAAACTTGAGCCTCTATTTCTTAACGAAATA
CTTCTTTTTACTACGGGCCCGTTCTGCGGTGTAGCCTTCACAGCGTCTAC
TGTACCGTTCGAACCGTCGGTTAAGGACACACATGGTCAGCGAGGGGGAG
GGGACTCCTTTCTTTGGCAGTGACGCCTATTGTTTGTGCTTTTTGGTGGG
GTCCGCGTATGACGAATGATGGATGGATGCGAACAGGGCCAACTCCTCCC
TCGGCTGGAGTCGATCAAGCACTACTTTCTGCTGGACAGG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9744:5478..7117+

>mRNA_Ecto-sp8_S_contig9744.31483.1 ID=mRNA_Ecto-sp8_S_contig9744.31483.1|Name=mRNA_Ecto-sp8_S_contig9744.31483.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9744:5478..7117+ (Ectocarpus species8 EcLAC_412)
TACTGGTCCGGGCGTTACCTCCTGCGGCCGGAGCACGTCATCGCCAACCT
TGCCGGCCGACAGGACAAGATTCTCACCACCGGAAAATACCTCAACGTCG
TCAGGCAATGCGGGCGACGAGTGGACTGTCCCCTGGCCGGCCCCATCCCC
GCCGACCCCGGAGCCGCGGGCGAGGGTCTGTACTTAAAGGTCATTGATGG
CGCTTACGGCTTCGCCTCTCGCTGCCTCATGGACCTCGTCGTTAGAGAGG
GCCAACTCCTCCCTCGGCTGGAGTCGATCAAGCACTACTTTCTGCTGGAC
AGG
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