mRNA_Ecto-sp8_S_contig974.31477.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig974.31477.1
Unique NamemRNA_Ecto-sp8_S_contig974.31477.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig974.31477.1 vs. uniprot
Match: D8LK62_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK62_ECTSI)

HSP 1 Score: 206 bits (525), Expect = 1.260e-67
Identity = 97/100 (97.00%), Postives = 98/100 (98.00%), Query Frame = 1 
Query:    1 MAEGGERLEATAHTEYHQLWGGPGSLRYHRRSVFFGHVFPAPAHMARLHGLFTVQRPRRMATFVACLRSPAGARAGERGGARGCDGGGPYLGLPPTCSGE 300
            MAEGGERLEATAH EYHQLWGGPG+LRYHRRSVFF HVFPAPAHMARLHGLFTVQRPRRMATFVACLRSPAGARAGERGGARGCDGGGPYLGLPPTCSGE
Sbjct:    1 MAEGGERLEATAHREYHQLWGGPGALRYHRRSVFFVHVFPAPAHMARLHGLFTVQRPRRMATFVACLRSPAGARAGERGGARGCDGGGPYLGLPPTCSGE 100
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig974.31477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LK62_ECTSI1.260e-6797.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig974contigEcto-sp8_S_contig974:12031..13453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size303
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_002890.1
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145339.5305698-CDS-Ecto-sp8_S_contig974:12030..121681681145339.5305698-CDS-Ecto-sp8_S_contig974:12030..12168Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig974 12031..12168 -
1681145339.54379-CDS-Ecto-sp8_S_contig974:13288..134531681145339.54379-CDS-Ecto-sp8_S_contig974:13288..13453Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig974 13289..13453 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig974.31477.1prot_Ecto-sp8_S_contig974.31477.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig974 12031..13453 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig974.31477.1

>prot_Ecto-sp8_S_contig974.31477.1 ID=prot_Ecto-sp8_S_contig974.31477.1|Name=mRNA_Ecto-sp8_S_contig974.31477.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=101bp
MAEGGERLEATAHTEYHQLWGGPGSLRYHRRSVFFGHVFPAPAHMARLHG
LFTVQRPRRMATFVACLRSPAGARAGERGGARGCDGGGPYLGLPPTCSGE
*
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mRNA from alignment at Ecto-sp8_S_contig974:12031..13453-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig974.31477.1 ID=mRNA_Ecto-sp8_S_contig974.31477.1|Name=mRNA_Ecto-sp8_S_contig974.31477.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1423bp|location=Sequence derived from alignment at Ecto-sp8_S_contig974:12031..13453- (Ectocarpus species8 EcLAC_412)
ATGGCCGAGGGAGGCGAGCGTCTGGAAGCCACCGCACACACGGAATATCA
CCAGCTGTGGGGTGGCCCCGGCTCGTTGCGATACCACCGTCGCAGCGTCT
TCTTCGGTCACGTCTTCCCGGCTCCGGCGCACATGGCGCGTCTGCATGGG
CTCTTCACTGTTCAGGTCGGTCAATTGTCACTATTTTGTGGCACCTCCAT
TTCTGGTTATGTCGGGTCATTTTGGTGTGAGGGTGGGGCATGGGTCGGTC
GTTCTACAGGGGGAGTTGCACGCCTTGTTTTCTGCAAAATTCATTCCCGT
GCCCCTCCCCTCCCCTCCCCTCCCCTCCCTGTACCTACATCAACGGTCCG
CTTTGGGGCTGTTTTGCGTGCCTTGATATCCGATGTTGTGCGTGACAGCC
GTCCGAAGCATTGATCGTTGCCTTCGTCGCGTTGCTGCTGCTCATGTTTC
AGACACGAGATCTACAACCGTCCGTTAGCGCGCCCTTCTTCGGCGGGTTA
CCGCTTCCATCTCCCCGCTTTGCTCGGCAGCGACCGAGGCGATGCGCGGT
TGTTTTCGCGTGTCTCCATTCACCGGCGGGGGTGAGAGCCGGCGAGGGAG
GCGGGGCTCGAGGTTGCGCTGGTGGTGGCGCATACCTCGAGCTTCCGTCC
CCCCGTCGGTGAGGCTCTCGTCTACGGCTGTGGGGCTGTAGCAGTTTGCA
GTAGGGGGGGACGGACGGAGCTCCTGCTATCGCTGCTGCGGCTGCAGTCC
TTAGGCATGGCCGAGGGAGGCGAGCGTCTGCGAGTCATCGCTCACAGGGA
ATATTACCAGCTGTGGGGTGGCCCCGGTGCGTTGCGATACCACCGTCGCA
GCACCTTCTTCGGCCACGTCTTCCCGGCTCCGGCGCGCATTGCGCGCCTG
CATGGGCTCTGCACTGTTCAGGTCGGGCATTTGTCTTTTTGTTCTGGCAT
CTCAATTGCTGGTTATGTCGGGTCATTTTGGTGTGAGGTTGGGGTACGGG
TCGGTCGTTCTATAGGGGGAGTTACACGCCTTGTATTCTGCAAAATCCAT
TCCCGTCCCCCTCCCCTCCTCTCTCCTCCTCTCCCTGAACGTACAACAAC
TGGCCCGCTCTGGCGCTGTTTCGCGTGCCTTGATATCCGATGTTGTGCGT
GACAGCCTTCCGAAGCAGTGATCGTTGCCTACGTCGTGTTGCCGCTGCTC
ATGTTTCAGACAAGGGGTCTACGAACCCGTTAGTGCGCCCTTCATCCGCG
CGTTACCGCCCCCCGCTCCCCGCTTTGCTCGGCAGCGACCGAGGCGAATG
GCGACTTTTGTCGCGTGTCTCCGTTCACCGGCGGGGGCGAGAGCCGGCGA
GCGAGGGGGAGCTCGAGGTTGCGATGGTGGTGGCCCATACCTCGGGCTTC
CGCCCACCTGTTCCGGCGAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig974:12031..13453-

>mRNA_Ecto-sp8_S_contig974.31477.1 ID=mRNA_Ecto-sp8_S_contig974.31477.1|Name=mRNA_Ecto-sp8_S_contig974.31477.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp8_S_contig974:12031..13453- (Ectocarpus species8 EcLAC_412)
ATGGCCGAGGGAGGCGAGCGTCTGGAAGCCACCGCACACACGGAATATCA
CCAGCTGTGGGGTGGCCCCGGCTCGTTGCGATACCACCGTCGCAGCGTCT
TCTTCGGTCACGTCTTCCCGGCTCCGGCGCACATGGCGCGTCTGCATGGG
CTCTTCACTGTTCAGCGACCGAGGCGAATGGCGACTTTTGTCGCGTGTCT
CCGTTCACCGGCGGGGGCGAGAGCCGGCGAGCGAGGGGGAGCTCGAGGTT
GCGATGGTGGTGGCCCATACCTCGGGCTTCCGCCCACCTGTTCCGGCGAG
TGA
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