mRNA_Ecto-sp8_S_contig97392.31476.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig97392.31476.1
Unique NamemRNA_Ecto-sp8_S_contig97392.31476.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig97392.31476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig97392contigEcto-sp8_S_contig97392:63..524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size462
Hectar predicted targeting categoryother localisation
Exons1
Cds size372
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145339.4706872-UTR-Ecto-sp8_S_contig97392:62..1411681145339.4706872-UTR-Ecto-sp8_S_contig97392:62..141Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig97392 63..141 +
1681145339.4951355-UTR-Ecto-sp8_S_contig97392:513..5241681145339.4951355-UTR-Ecto-sp8_S_contig97392:513..524Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig97392 514..524 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145339.4841037-CDS-Ecto-sp8_S_contig97392:141..5131681145339.4841037-CDS-Ecto-sp8_S_contig97392:141..513Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig97392 142..513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig97392.31476.1prot_Ecto-sp8_S_contig97392.31476.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig97392 142..513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig97392.31476.1

>prot_Ecto-sp8_S_contig97392.31476.1 ID=prot_Ecto-sp8_S_contig97392.31476.1|Name=mRNA_Ecto-sp8_S_contig97392.31476.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=124bp
MHSSSEISSGCTRTRFSGTSPAPDKTKKNHGIQPYRTAGVCRPTTTHATK
RSLYVQTSPLTVPRPPTTPLSSSITCIRNCKQATSSTSNRQAQQRATTSV
WGRANCPPFFPYIISWPESQKKQ*
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mRNA from alignment at Ecto-sp8_S_contig97392:63..524+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig97392.31476.1 ID=mRNA_Ecto-sp8_S_contig97392.31476.1|Name=mRNA_Ecto-sp8_S_contig97392.31476.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=462bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97392:63..524+ (Ectocarpus species8 EcLAC_412)
CCCCCACAAAAAATGACATGTACTTCAGTTTCATACAACACACCTATCAC
TCGACGTCAGAACCCGCCGAGACTCGGACATGCACAGTTCGTCGGAGATC
AGCAGCGGGTGCACACGAACGCGTTTTTCCGGGACCTCCCCTGCCCCCGA
CAAAACGAAAAAAAACCACGGAATACAACCGTACCGAACGGCGGGCGTGT
GCAGACCGACGACGACCCACGCCACAAAGCGAAGTCTCTACGTGCAGACC
AGCCCCCTGACGGTACCACGCCCACCAACAACGCCGCTAAGCAGCAGCAT
CACATGCATACGTAACTGCAAACAAGCAACTTCCAGCACATCAAACAGAC
AGGCGCAACAGCGCGCTACTACTTCGGTGTGGGGGCGGGCAAATTGCCCC
CCTTTTTTTCCCTACATAATCTCGTGGCCTGAGTCCCAGAAAAAACAATA
ACTTGAATACAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig97392:63..524+

>mRNA_Ecto-sp8_S_contig97392.31476.1 ID=mRNA_Ecto-sp8_S_contig97392.31476.1|Name=mRNA_Ecto-sp8_S_contig97392.31476.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=372bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97392:63..524+ (Ectocarpus species8 EcLAC_412)
ATGCACAGTTCGTCGGAGATCAGCAGCGGGTGCACACGAACGCGTTTTTC
CGGGACCTCCCCTGCCCCCGACAAAACGAAAAAAAACCACGGAATACAAC
CGTACCGAACGGCGGGCGTGTGCAGACCGACGACGACCCACGCCACAAAG
CGAAGTCTCTACGTGCAGACCAGCCCCCTGACGGTACCACGCCCACCAAC
AACGCCGCTAAGCAGCAGCATCACATGCATACGTAACTGCAAACAAGCAA
CTTCCAGCACATCAAACAGACAGGCGCAACAGCGCGCTACTACTTCGGTG
TGGGGGCGGGCAAATTGCCCCCCTTTTTTTCCCTACATAATCTCGTGGCC
TGAGTCCCAGAAAAAACAATAA
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