mRNA_Ecto-sp8_S_contig9739.31475.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9739.31475.1
Unique NamemRNA_Ecto-sp8_S_contig9739.31475.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9739.31475.1 vs. uniprot
Match: A0A6H5JAQ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAQ4_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.480e-6
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    1 GVGTGPGRGGGAAGGIERRQTDGETSGRAVATTGT 105
            GVGTGPGRGGGAAGGIERRQ DGE+SGRA ATTGT
Sbjct:  300 GVGTGPGRGGGAAGGIERRQFDGESSGRAAATTGT 334
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9739.31475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JAQ4_9PHAE1.480e-691.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9739contigEcto-sp8_S_contig9739:5688..6360 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size673
Hectar predicted targeting categoryother localisation
Exons1
Cds size369
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145339.4037087-UTR-Ecto-sp8_S_contig9739:5687..59101681145339.4037087-UTR-Ecto-sp8_S_contig9739:5687..5910Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9739 5688..5910 +
1681145339.433191-UTR-Ecto-sp8_S_contig9739:6279..63601681145339.433191-UTR-Ecto-sp8_S_contig9739:6279..6360Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9739 6280..6360 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145339.4198093-CDS-Ecto-sp8_S_contig9739:5910..62791681145339.4198093-CDS-Ecto-sp8_S_contig9739:5910..6279Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9739 5911..6279 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9739.31475.1prot_Ecto-sp8_S_contig9739.31475.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9739 5911..6279 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9739.31475.1

>prot_Ecto-sp8_S_contig9739.31475.1 ID=prot_Ecto-sp8_S_contig9739.31475.1|Name=mRNA_Ecto-sp8_S_contig9739.31475.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=123bp
MLDCYVCVFRGTSAVHVVSSVVIIVRMRMTGVGEPRSATCRSCCTGWPRR
GYQLPSSPCSSFSLRDRWAPVGLIDQIVRLFLIWQVHSCWDRAKKQSRSL
LRAWNCCVGKRNVALRLAPCCW*
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mRNA from alignment at Ecto-sp8_S_contig9739:5688..6360+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9739.31475.1 ID=mRNA_Ecto-sp8_S_contig9739.31475.1|Name=mRNA_Ecto-sp8_S_contig9739.31475.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=673bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9739:5688..6360+ (Ectocarpus species8 EcLAC_412)
GGAGTTGGAACGGGACCTGGAAGAGGGGGAGGGGCGGCGGGAGGGATAGA
GAGACGGCAAACAGACGGAGAAACTAGCGGCCGCGCGGTTGCGACAACAG
GCACATAAAAAAGCAGAGGGTATTCCGTTTTCGTAGGTTGTGTCGATGAT
CCCACATGCACGTACTATCGTGCAGGAGAGCTAGTGTTGAGCGTTGGTTA
GAGGTTAAGGGTGAAGGCCGTTCATGTTAGATTGTTATGTTTGCGTTTTT
AGAGGAACATCTGCTGTGCACGTAGTCTCCTCTGTTGTTATCATCGTTCG
AATGCGCATGACAGGTGTTGGCGAACCCAGGTCTGCAACGTGTAGAAGTT
GTTGCACGGGTTGGCCGCGTCGGGGCTACCAGTTGCCGTCGAGCCCGTGT
TCTAGCTTTTCATTGCGGGATAGATGGGCCCCTGTTGGACTCATAGATCA
GATTGTCAGGTTGTTTTTAATCTGGCAGGTGCACTCCTGTTGGGACCGGG
CTAAGAAACAGAGTCGGTCGCTGCTTCGGGCTTGGAACTGTTGTGTCGGG
AAGCGCAATGTGGCCCTTCGTCTTGCCCCTTGCTGTTGGTAGAGAAGTAT
CCCTCCGTGCTGTTGTATTTCGGTAGGTCCTGCGTTGCTTAATTCAGTTC
CCAAGCTTGGGTCTCTGTCGACC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9739:5688..6360+

>mRNA_Ecto-sp8_S_contig9739.31475.1 ID=mRNA_Ecto-sp8_S_contig9739.31475.1|Name=mRNA_Ecto-sp8_S_contig9739.31475.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=369bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9739:5688..6360+ (Ectocarpus species8 EcLAC_412)
ATGTTAGATTGTTATGTTTGCGTTTTTAGAGGAACATCTGCTGTGCACGT
AGTCTCCTCTGTTGTTATCATCGTTCGAATGCGCATGACAGGTGTTGGCG
AACCCAGGTCTGCAACGTGTAGAAGTTGTTGCACGGGTTGGCCGCGTCGG
GGCTACCAGTTGCCGTCGAGCCCGTGTTCTAGCTTTTCATTGCGGGATAG
ATGGGCCCCTGTTGGACTCATAGATCAGATTGTCAGGTTGTTTTTAATCT
GGCAGGTGCACTCCTGTTGGGACCGGGCTAAGAAACAGAGTCGGTCGCTG
CTTCGGGCTTGGAACTGTTGTGTCGGGAAGCGCAATGTGGCCCTTCGTCT
TGCCCCTTGCTGTTGGTAG
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