mRNA_Ecto-sp8_S_contig97376.31473.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig97376.31473.1
Unique NamemRNA_Ecto-sp8_S_contig97376.31473.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig97376.31473.1 vs. uniprot
Match: D7G429_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G429_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 2.330e-32
Identity = 54/58 (93.10%), Postives = 57/58 (98.28%), Query Frame = 1 
Query:    1 RSTRTSVYPNQMHKSGINGLPTVVLFKEGNEITRTEGVVPYSNSDISWVGAALAREGT 174
            RST+TSVYPNQMHK GING+PTVVLFKEGNEITRTEGVVPYSNSDI+WVGAALAREGT
Sbjct:   15 RSTQTSVYPNQMHKFGINGVPTVVLFKEGNEITRTEGVVPYSNSDIAWVGAALAREGT 72
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BLAST of mRNA_Ecto-sp8_S_contig97376.31473.1 vs. uniprot
Match: D7G430_ECTSI (Plastid thioredoxin M n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G430_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 2.140e-8
Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   13 TSVYPNQMHKSGINGLPTVVLFKEGNEITRTEGVVP 120
            T  YPN M K G+NGLPT+VLFKEG E+TR EGV+P
Sbjct:  127 TDKYPNLMSKFGVNGLPTLVLFKEGKELTRMEGVMP 162
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BLAST of mRNA_Ecto-sp8_S_contig97376.31473.1 vs. uniprot
Match: A0A6H5JZH9_9PHAE (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZH9_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 3.780e-8
Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   13 TSVYPNQMHKSGINGLPTVVLFKEGNEITRTEGVVP 120
            T  YPN M K G+NGLPT+VLFKEG E+TR EGV+P
Sbjct:  760 TDKYPNLMSKFGVNGLPTLVLFKEGKELTRMEGVMP 795
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig97376.31473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G429_ECTSI2.330e-3293.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G430_ECTSI2.140e-869.44Plastid thioredoxin M n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5JZH9_9PHAE3.780e-869.44Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig97376contigEcto-sp8_S_contig97376:2..175 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size174
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size174
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145339.2770584-CDS-Ecto-sp8_S_contig97376:1..1751681145339.2770584-CDS-Ecto-sp8_S_contig97376:1..175Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig97376 2..175 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig97376.31473.1prot_Ecto-sp8_S_contig97376.31473.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig97376 2..175 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig97376.31473.1

>prot_Ecto-sp8_S_contig97376.31473.1 ID=prot_Ecto-sp8_S_contig97376.31473.1|Name=mRNA_Ecto-sp8_S_contig97376.31473.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=58bp
RSTRTSVYPNQMHKSGINGLPTVVLFKEGNEITRTEGVVPYSNSDISWVG
AALAREGT
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mRNA from alignment at Ecto-sp8_S_contig97376:2..175-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig97376.31473.1 ID=mRNA_Ecto-sp8_S_contig97376.31473.1|Name=mRNA_Ecto-sp8_S_contig97376.31473.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=174bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97376:2..175- (Ectocarpus species8 EcLAC_412)
AGATCGACACGGACAAGTGTGTACCCCAATCAGATGCACAAGTCCGGCAT
AAACGGGCTGCCAACCGTGGTCCTCTTCAAGGAGGGCAACGAGATAACGC
GAACGGAGGGCGTGGTGCCATACAGCAACTCCGATATTTCCTGGGTGGGG
GCGGCGTTGGCCAGGGAAGGGACG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig97376:2..175-

>mRNA_Ecto-sp8_S_contig97376.31473.1 ID=mRNA_Ecto-sp8_S_contig97376.31473.1|Name=mRNA_Ecto-sp8_S_contig97376.31473.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=174bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97376:2..175- (Ectocarpus species8 EcLAC_412)
AGATCGACACGGACAAGTGTGTACCCCAATCAGATGCACAAGTCCGGCAT
AAACGGGCTGCCAACCGTGGTCCTCTTCAAGGAGGGCAACGAGATAACGC
GAACGGAGGGCGTGGTGCCATACAGCAACTCCGATATTTCCTGGGTGGGG
GCGGCGTTGGCCAGGGAAGGGACG
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