mRNA_Ecto-sp8_S_contig97360.31471.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig97360.31471.1
Unique NamemRNA_Ecto-sp8_S_contig97360.31471.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig97360.31471.1 vs. uniprot
Match: D7G429_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G429_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 2.270e-33
Identity = 56/61 (91.80%), Postives = 59/61 (96.72%), Query Frame = 1 
Query:    1 IQLRSTQTSVYPNQMHKSGINGLPTVVLFKEGNEITRTEGVVPYSNSDISWVGAALAREGT 183
            I+ RSTQTSVYPNQMHK GING+PTVVLFKEGNEITRTEGVVPYSNSDI+WVGAALAREGT
Sbjct:   12 IRTRSTQTSVYPNQMHKFGINGVPTVVLFKEGNEITRTEGVVPYSNSDIAWVGAALAREGT 72
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BLAST of mRNA_Ecto-sp8_S_contig97360.31471.1 vs. uniprot
Match: D7G430_ECTSI (Plastid thioredoxin M n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G430_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 2.410e-8
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 IQLRSTQTSVYPNQMHKSGINGLPTVVLFKEGNEITRTEGVVP 129
            +++    T  YPN M K G+NGLPT+VLFKEG E+TR EGV+P
Sbjct:  120 LKIFKIDTDKYPNLMSKFGVNGLPTLVLFKEGKELTRMEGVMP 162
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BLAST of mRNA_Ecto-sp8_S_contig97360.31471.1 vs. uniprot
Match: A0A6H5JZH9_9PHAE (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZH9_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 4.300e-8
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 IQLRSTQTSVYPNQMHKSGINGLPTVVLFKEGNEITRTEGVVP 129
            +++    T  YPN M K G+NGLPT+VLFKEG E+TR EGV+P
Sbjct:  753 LKIFKIDTDKYPNLMSKFGVNGLPTLVLFKEGKELTRMEGVMP 795
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig97360.31471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G429_ECTSI2.270e-3391.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G430_ECTSI2.410e-858.14Plastid thioredoxin M n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5JZH9_9PHAE4.300e-858.14Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig97360contigEcto-sp8_S_contig97360:2..184 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size183
Hectar predicted targeting categoryother localisation
Exons1
Cds size183
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145339.1078577-CDS-Ecto-sp8_S_contig97360:1..1841681145339.1078577-CDS-Ecto-sp8_S_contig97360:1..184Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig97360 2..184 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig97360.31471.1prot_Ecto-sp8_S_contig97360.31471.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig97360 2..184 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig97360.31471.1

>prot_Ecto-sp8_S_contig97360.31471.1 ID=prot_Ecto-sp8_S_contig97360.31471.1|Name=mRNA_Ecto-sp8_S_contig97360.31471.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=61bp
IQLRSTQTSVYPNQMHKSGINGLPTVVLFKEGNEITRTEGVVPYSNSDIS
WVGAALAREGT
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mRNA from alignment at Ecto-sp8_S_contig97360:2..184-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig97360.31471.1 ID=mRNA_Ecto-sp8_S_contig97360.31471.1|Name=mRNA_Ecto-sp8_S_contig97360.31471.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=183bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97360:2..184- (Ectocarpus species8 EcLAC_412)
ATTCAACTCAGATCGACACAGACAAGTGTGTACCCCAATCAGATGCACAA
GTCCGGAATAAACGGGCTGCCAACCGTGGTCCTCTTCAAGGAGGGCAACG
AGATAACGCGAACGGAGGGCGTGGTGCCATACAGCAACTCCGATATTTCC
TGGGTGGGGGCGGCGTTGGCCAGGGAAGGGACG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig97360:2..184-

>mRNA_Ecto-sp8_S_contig97360.31471.1 ID=mRNA_Ecto-sp8_S_contig97360.31471.1|Name=mRNA_Ecto-sp8_S_contig97360.31471.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=183bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97360:2..184- (Ectocarpus species8 EcLAC_412)
ATTCAACTCAGATCGACACAGACAAGTGTGTACCCCAATCAGATGCACAA
GTCCGGAATAAACGGGCTGCCAACCGTGGTCCTCTTCAAGGAGGGCAACG
AGATAACGCGAACGGAGGGCGTGGTGCCATACAGCAACTCCGATATTTCC
TGGGTGGGGGCGGCGTTGGCCAGGGAAGGGACG
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