mRNA_Ecto-sp8_S_contig9733.31466.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9733.31466.1
Unique NamemRNA_Ecto-sp8_S_contig9733.31466.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig9733.31466.1 vs. uniprot
Match: A0A7S2BMV1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BMV1_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.690e-12
Identity = 35/83 (42.17%), Postives = 47/83 (56.63%), Query Frame = 1
Query:    4 HVFASRSVCPRCREPRPY-----EEGLGVSSSGGGAGGGYRQREPVQKREGDWDCPSCQFHNFASRQVCYKCQAPRPHDADDY 237
            +VFAS+S C RC EP+P+      EG  V   GGGA   +    P   R GDW C  CQ + FAS+  C++C AP+P +A  +
Sbjct:   29 NVFASKSHCFRCDEPKPHFGGEPNEGGDVMMEGGGAPRSFDP--PSNVRPGDWQCNQCQANVFASKSNCFRCNAPKPVEAGGF 109          
BLAST of mRNA_Ecto-sp8_S_contig9733.31466.1 vs. uniprot
Match: A0A8J5CL53_CHIOP (Tyrosine--tRNA ligase n=1 Tax=Chionoecetes opilio TaxID=41210 RepID=A0A8J5CL53_CHIOP)

HSP 1 Score: 70.9 bits (172), Expect = 7.400e-12
Identity = 33/72 (45.83%), Postives = 40/72 (55.56%), Query Frame = 1
Query:   10 FASRSVCPRCREPRPYEEGLGVSSSGGGAGGGYRQREPVQKRE---GDWDCPSCQFHNFASRQVCYKCQAPR 216
            FASR+ C +CR P+  + G G S  G G             R    GDW CP CQFHNF+SR +CYKC +PR
Sbjct:  557 FASRTACFKCRTPKDGDSGNGDSGFGSGXRXXXXXXXXXXMRNMLPGDWICPKCQFHNFSSRGMCYKCNSPR 628          
BLAST of mRNA_Ecto-sp8_S_contig9733.31466.1 vs. uniprot
Match: A0A2E4T2E7_9EURY (Uncharacterized protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E4T2E7_9EURY)

HSP 1 Score: 68.6 bits (166), Expect = 1.350e-11
Identity = 33/77 (42.86%), Postives = 43/77 (55.84%), Query Frame = 1
Query:    1 NHVFASRSVCPR--CREPRPYEEGLGVSSSGG--GAGGGYRQREPVQKREGDWDCPSCQFHNFASRQVCYKCQAPRP 219
            NH FA++ VC R  C +P+P   G G  S G   G  GG+R       + GDW+CP C  HNFA R+VC +C   +P
Sbjct:  119 NHNFANKKVCNRTGCEQPKPKVVGKGRDSRGHRPGGSGGFRDSN---MKPGDWNCPKCNNHNFAKREVCNRCDTRKP 192          
BLAST of mRNA_Ecto-sp8_S_contig9733.31466.1 vs. uniprot
Match: UPI001E672EAC (RNA-binding protein cabeza-like isoform X7 n=1 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E672EAC)

HSP 1 Score: 65.5 bits (158), Expect = 1.430e-10
Identity = 32/71 (45.07%), Postives = 39/71 (54.93%), Query Frame = 1
Query:   10 FASRSVCPRCREPRPYEEGLGVSSSGGGAGGGYRQREPVQK--REGDWDCPSCQFHNFASRQVCYKCQAPR 216
            FASR+ C +CR P+  +       SGG  G          +  R GDW C  CQFHNF+SR +CYKC APR
Sbjct:   96 FASRTACFKCRTPKDGDS----FGSGGRVGXXXXXXXXXMRDMRPGDWACQKCQFHNFSSRGMCYKCNAPR 162          
BLAST of mRNA_Ecto-sp8_S_contig9733.31466.1 vs. uniprot
Match: A0A2E9IKV1_9EURY (Uncharacterized protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E9IKV1_9EURY)

HSP 1 Score: 65.1 bits (157), Expect = 7.390e-10
Identity = 37/96 (38.54%), Postives = 42/96 (43.75%), Query Frame = 1
Query:    1 NHVFASRSVCPRCREPRPYEEGLGVSSSGGGAGGGYRQREPVQKREG-----------------------DWDCPSCQFHNFASRQVCYKCQAPRP 219
            N  FA R  C RC EPR           GGG  GGY QR+  ++ EG                       DW+CP C   NFA RQ C +CQAPRP
Sbjct:  199 NSNFAFRQECNRCGEPR---------GRGGGNRGGYNQRDSGRRNEGRYDRDSRRGSDNRRRSGEIFNDNDWECPQCNNSNFAFRQECNRCQAPRP 285          
BLAST of mRNA_Ecto-sp8_S_contig9733.31466.1 vs. uniprot
Match: I0Z1Q0_COCSC (Queuine tRNA-ribosyltransferase accessory subunit 2 n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z1Q0_COCSC)

HSP 1 Score: 65.1 bits (157), Expect = 7.990e-10
Identity = 36/82 (43.90%), Postives = 45/82 (54.88%), Query Frame = 1
Query:   10 FASRSVCPRCREPRPYEEGLGVSSSGGGAGGGYRQREPVQ---KRE------GDWDCPSCQFHNFASRQVCYKCQAPRPHDA 228
            FA R+ C +C EPRP   G  V  S   +G  Y QR+  +   +RE      GDW CP C  HNFASR  C++C  PRP +A
Sbjct:  782 FARRTECFQCNEPRPESAGP-VPESRFSSGPRYGQRDNFRDGPRREAPAMKPGDWMCPECNGHNFASRADCFRCNFPRPAEA 862          
BLAST of mRNA_Ecto-sp8_S_contig9733.31466.1 vs. uniprot
Match: A0A8J9WKT8_9CHLO (Probable zinc finger Ran-binding domain-containing protein 2 at C-terminar half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WKT8_9CHLO)

HSP 1 Score: 64.3 bits (155), Expect = 1.380e-9
Identity = 35/78 (44.87%), Postives = 40/78 (51.28%), Query Frame = 1
Query:   10 FASRSVCPRCREPRPYEEGLGVS-----SSGGGAGGGYRQREPVQKREGDWDCPSCQFHNFASRQVCYKCQAPRPHDA 228
            FA R  C +C EPRP   G   S      S      G R+  PV K +GDW CP C  HNFASR  C++C  PRP  A
Sbjct:  348 FARRMECYQCSEPRPASAGPVPSREPRFGSRDNFRDGPRRDAPVMK-QGDWMCPECNGHNFASRSDCFRCSFPRPASA 424          
BLAST of mRNA_Ecto-sp8_S_contig9733.31466.1 vs. uniprot
Match: A0A2E8JTN4_9EURY (Uncharacterized protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E8JTN4_9EURY)

HSP 1 Score: 63.5 bits (153), Expect = 2.480e-9
Identity = 35/84 (41.67%), Postives = 41/84 (48.81%), Query Frame = 1
Query:    1 NHVFASRSVCPRCREPRPYEEGLGVSSSGGGAGGGYRQREPVQ-----------KREGDWDCPSCQFHNFASRQVCYKCQAPRP 219
            N  FA R VC RC  PRP   G G S   GG      QR+  +             + DW CP C+  NFA RQVC +C+APRP
Sbjct:  136 NSNFAFRQVCNRCEAPRPG--GRGGSRDNGGRSDRRPQRDSGRFDRRDNNRQEIYNDNDWTCPECKNSNFAFRQVCNRCEAPRP 217          
BLAST of mRNA_Ecto-sp8_S_contig9733.31466.1 vs. uniprot
Match: A0A075GQT5_9EURY (RNA-binding Zn-finger-containing protein n=2 Tax=environmental samples TaxID=68359 RepID=A0A075GQT5_9EURY)

HSP 1 Score: 62.8 bits (151), Expect = 3.620e-9
Identity = 34/78 (43.59%), Postives = 43/78 (55.13%), Query Frame = 1
Query:    1 NHVFASRSVCPR--CREPRPYEEGLGVSSSGG---GAGGGYRQREPVQKREGDWDCPSCQFHNFASRQVCYKCQAPRP 219
            NH +A++ VC R  C EP+P   G G  +S G      GG+R       + GDW CPSC  HNFASR  C +C A +P
Sbjct:  194 NHNYANKKVCNRTGCEEPKP-RGGSGSRNSRGHRSSNSGGFRDSN---MKPGDWTCPSCSNHNFASRTECNRCDARKP 267          
BLAST of mRNA_Ecto-sp8_S_contig9733.31466.1 vs. uniprot
Match: A0A7S2STL9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STL9_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 4.620e-9
Identity = 33/87 (37.93%), Postives = 38/87 (43.68%), Query Frame = 1
Query:    7 VFASRSVCPRCREPRPYEEGLGVSSSGGGAGGGYRQREPV----------------QKREGDWDCPSCQFHNFASRQVCYKCQAPRP 219
            VFAS+S C +C+ PRP          GGG G                          +R GDWDCPSC  H FASR  C+KC  P P
Sbjct:   52 VFASKSNCYKCQTPRP--------DGGGGYGXXXXXXXXXXXXXXXXXXXXXXXXXDRRAGDWDCPSCGAHCFASRSTCFKCGTPNP 130          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9733.31466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2BMV1_9STRA1.690e-1242.17Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A8J5CL53_CHIOP7.400e-1245.83Tyrosine--tRNA ligase n=1 Tax=Chionoecetes opilio ... [more]
A0A2E4T2E7_9EURY1.350e-1142.86Uncharacterized protein n=1 Tax=Euryarchaeota arch... [more]
UPI001E672EAC1.430e-1045.07RNA-binding protein cabeza-like isoform X7 n=1 Tax... [more]
A0A2E9IKV1_9EURY7.390e-1038.54Uncharacterized protein n=1 Tax=Euryarchaeota arch... [more]
I0Z1Q0_COCSC7.990e-1043.90Queuine tRNA-ribosyltransferase accessory subunit ... [more]
A0A8J9WKT8_9CHLO1.380e-944.87Probable zinc finger Ran-binding domain-containing... [more]
A0A2E8JTN4_9EURY2.480e-941.67Uncharacterized protein n=1 Tax=Euryarchaeota arch... [more]
A0A075GQT5_9EURY3.620e-943.59RNA-binding Zn-finger-containing protein n=2 Tax=e... [more]
A0A7S2STL9_9STRA4.620e-937.93Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9733contigEcto-sp8_S_contig9733:6064..6423 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score69.3
Seed ortholog evalue1.4e-09
Seed eggNOG ortholog296587.XP_002502913.1
Model size360
KEGG koko:K13098
KEGG Pathwayko05202,map05202
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Zinc finger domain
EggNOG OGs2E2EG@1,2S9NA@2759
Cds size360
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145338.7889102-CDS-Ecto-sp8_S_contig9733:6063..64231681145338.7889102-CDS-Ecto-sp8_S_contig9733:6063..6423Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9733 6064..6423 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9733.31466.1prot_Ecto-sp8_S_contig9733.31466.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9733 6064..6423 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9733.31466.1

>prot_Ecto-sp8_S_contig9733.31466.1 ID=prot_Ecto-sp8_S_contig9733.31466.1|Name=mRNA_Ecto-sp8_S_contig9733.31466.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=120bp
NHVFASRSVCPRCREPRPYEEGLGVSSSGGGAGGGYRQREPVQKREGDWD
CPSCQFHNFASRQVCYKCQAPRPHDADDYGGGGGGRRGGGGWGSGGGGWA
SGGGGGGGGGWASGGGGGY*
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mRNA from alignment at Ecto-sp8_S_contig9733:6064..6423-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9733.31466.1 ID=mRNA_Ecto-sp8_S_contig9733.31466.1|Name=mRNA_Ecto-sp8_S_contig9733.31466.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=360bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9733:6064..6423- (Ectocarpus species8 EcLAC_412)
AACCACGTCTTCGCCTCGCGGTCCGTGTGCCCAAGATGCCGGGAACCCAG GCCGTACGAGGAGGGATTGGGAGTCAGCAGTTCCGGCGGCGGTGCGGGGG GGGGGTACAGGCAGAGAGAGCCGGTGCAGAAGAGGGAGGGCGACTGGGAT TGCCCGTCGTGCCAGTTCCACAATTTCGCGAGCCGACAAGTTTGCTACAA GTGCCAGGCGCCAAGGCCACACGACGCGGACGATTACGGAGGTGGAGGCG GTGGACGGAGGGGGGGAGGGGGGTGGGGAAGCGGTGGGGGTGGTTGGGCC AGCGGTGGGGGCGGTGGAGGTGGGGGAGGGTGGGCTAGCGGAGGTGGGGG AGGTTACTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9733:6064..6423-

>mRNA_Ecto-sp8_S_contig9733.31466.1 ID=mRNA_Ecto-sp8_S_contig9733.31466.1|Name=mRNA_Ecto-sp8_S_contig9733.31466.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=360bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9733:6064..6423- (Ectocarpus species8 EcLAC_412)
AACCACGTCTTCGCCTCGCGGTCCGTGTGCCCAAGATGCCGGGAACCCAG
GCCGTACGAGGAGGGATTGGGAGTCAGCAGTTCCGGCGGCGGTGCGGGGG
GGGGGTACAGGCAGAGAGAGCCGGTGCAGAAGAGGGAGGGCGACTGGGAT
TGCCCGTCGTGCCAGTTCCACAATTTCGCGAGCCGACAAGTTTGCTACAA
GTGCCAGGCGCCAAGGCCACACGACGCGGACGATTACGGAGGTGGAGGCG
GTGGACGGAGGGGGGGAGGGGGGTGGGGAAGCGGTGGGGGTGGTTGGGCC
AGCGGTGGGGGCGGTGGAGGTGGGGGAGGGTGGGCTAGCGGAGGTGGGGG
AGGTTACTGA
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