mRNA_Ecto-sp8_S_contig9730.31463.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9730.31463.1
Unique NamemRNA_Ecto-sp8_S_contig9730.31463.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9730.31463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9730contigEcto-sp8_S_contig9730:4728..5151 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size425
Hectar predicted targeting categoryother localisation
Exons1
Cds size345
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145338.5501328-CDS-Ecto-sp8_S_contig9730:4727..50721681145338.5501328-CDS-Ecto-sp8_S_contig9730:4727..5072Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9730 4728..5072 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145338.5613165-UTR-Ecto-sp8_S_contig9730:5072..51511681145338.5613165-UTR-Ecto-sp8_S_contig9730:5072..5151Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9730 5073..5151 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9730.31463.1prot_Ecto-sp8_S_contig9730.31463.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9730 4728..5072 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9730.31463.1

>prot_Ecto-sp8_S_contig9730.31463.1 ID=prot_Ecto-sp8_S_contig9730.31463.1|Name=mRNA_Ecto-sp8_S_contig9730.31463.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=115bp
ALTYTLVASSKCAYIPPYLAEIVERLFDDRFSSHFHSTESSQFNSTTAVQ
GAYLAEIERLLSAVFPRTFILPRASQLNITAAVQGPAGGSSRGGGFRQHV
HGPRTSRYQALYVK*
back to top

mRNA from alignment at Ecto-sp8_S_contig9730:4728..5151+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9730.31463.1 ID=mRNA_Ecto-sp8_S_contig9730.31463.1|Name=mRNA_Ecto-sp8_S_contig9730.31463.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=424bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9730:4728..5151+ (Ectocarpus species8 EcLAC_412)
GCACTAACTTACACACTTGTTGCCTCTTCGAAGTGCGCGTACATACCGCC
GTACCTTGCAGAGATTGTAGAGAGGCTGTTTGATGACCGTTTTTCCTCGC
ACTTTCATTCTACCGAGAGCTCCCAGTTTAACAGCACCACAGCAGTACAA
GGTGCATACCTTGCAGAGATAGAGAGACTGCTGTCGGCCGTTTTTCCTCG
CACTTTCATTCTACCGAGAGCTTCACAGTTAAACATCACCGCAGCAGTGC
AAGGACCTGCCGGAGGATCATCGCGGGGAGGTGGATTCCGACAACATGTA
CACGGACCACGTACGTCACGATATCAAGCGTTATATGTGAAGTAGAGAAG
GGGGTTTCGTAACCCTGACCCTGAACCGCAACCCCTACTAAAACCAAGCC
ATATTCTCGTGAAGGTTGCTGATG
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9730:4728..5151+

>mRNA_Ecto-sp8_S_contig9730.31463.1 ID=mRNA_Ecto-sp8_S_contig9730.31463.1|Name=mRNA_Ecto-sp8_S_contig9730.31463.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=345bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9730:4728..5151+ (Ectocarpus species8 EcLAC_412)
GCACTAACTTACACACTTGTTGCCTCTTCGAAGTGCGCGTACATACCGCC
GTACCTTGCAGAGATTGTAGAGAGGCTGTTTGATGACCGTTTTTCCTCGC
ACTTTCATTCTACCGAGAGCTCCCAGTTTAACAGCACCACAGCAGTACAA
GGTGCATACCTTGCAGAGATAGAGAGACTGCTGTCGGCCGTTTTTCCTCG
CACTTTCATTCTACCGAGAGCTTCACAGTTAAACATCACCGCAGCAGTGC
AAGGACCTGCCGGAGGATCATCGCGGGGAGGTGGATTCCGACAACATGTA
CACGGACCACGTACGTCACGATATCAAGCGTTATATGTGAAGTAG
back to top