mRNA_Ecto-sp8_S_contig973.31462.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig973.31462.1
Unique NamemRNA_Ecto-sp8_S_contig973.31462.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig973.31462.1 vs. uniprot
Match: A0A6H5JGU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU1_9PHAE)

HSP 1 Score: 378 bits (970), Expect = 7.700e-121
Identity = 240/275 (87.27%), Postives = 243/275 (88.36%), Query Frame = 3 
Query:  291 MPPPPSSTPAPYSGTSSVRERARAWQASSPRAASPPSGSVSPPVVKEKEVPPTIEEIEAMEKADWVQVAAEAAADQEEPCRTPSGSSLPQLDNKQTPRTYSRQVSRVSGTGRAARASTPRAXXXXXXXXXXXXXXXXXXXXSGTQRRGRSPQKPHHQQEISRSHSQRRLHRRSVSVDDPDHRPTQRLPRGQQHPRATRSGGAPAGRRPAXXXXXXXXXXXXRQPQNGRRVQQLNNPARTPRPAQQINGGRGG-RVPYTAHGTPSATPMNSNRTKQ 1112
            MPPPPSSTPAPY GTSSVRERARAWQ SS R ASPPSGSVSPPV+KEKEVPPTIEEIEAMEKADWV+VAA AAADQEEPCRTP GSSLPQLDNKQTPRTYSRQVSRVSGTGR ARASTPR  XXXXXXXXXXXXXXXXX  SGTQRRGRSP KPHHQQEISRS SQRRLHRRSVSVDDPDHRPTQRLPRG QHPR TRS GAPAGR PA   XXXXX    RQPQN RRVQQL+NPART     QINGGRGG RV YTAHGTPSATPMNSNRTKQ
Sbjct:    1 MPPPPSSTPAPYPGTSSVRERARAWQESSARDASPPSGSVSPPVMKEKEVPPTIEEIEAMEKADWVEVAAAAAADQEEPCRTPGGSSLPQLDNKQTPRTYSRQVSRVSGTGRTARASTPRTAXXXXXXXXXXXXXXXXXT-SGTQRRGRSPPKPHHQQEISRSQSQRRLHRRSVSVDDPDHRPTQRLPRGHQHPRTTRSRGAPAGRAPAASNXXXXXSGG-RQPQNSRRVQQLDNPARTTSRPSQINGGRGGGRVLYTAHGTPSATPMNSNRTKQ 273
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig973.31462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JGU1_9PHAE7.700e-12187.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig973contigEcto-sp8_S_contig973:15262..16664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1404
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_009830.1
Cds size1320
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145338.2604432-UTR-Ecto-sp8_S_contig973:15261..153441681145338.2604432-UTR-Ecto-sp8_S_contig973:15261..15344Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig973 15262..15344 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145338.2804637-CDS-Ecto-sp8_S_contig973:15344..166641681145338.2804637-CDS-Ecto-sp8_S_contig973:15344..16664Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig973 15345..16664 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig973.31462.1prot_Ecto-sp8_S_contig973.31462.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig973 15345..16664 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig973.31462.1

>prot_Ecto-sp8_S_contig973.31462.1 ID=prot_Ecto-sp8_S_contig973.31462.1|Name=mRNA_Ecto-sp8_S_contig973.31462.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=440bp
MSRFSFSGSSSYLSSTCQHTHTPAARTPSLALLPAALPLPCERACTPFCW
TVERERETSSVEGDRFGGKMPPPPSSTPAPYSGTSSVRERARAWQASSPR
AASPPSGSVSPPVVKEKEVPPTIEEIEAMEKADWVQVAAEAAADQEEPCR
TPSGSSLPQLDNKQTPRTYSRQVSRVSGTGRAARASTPRAAAAAAAAAAA
AAAAAAGDAASGTQRRGRSPQKPHHQQEISRSHSQRRLHRRSVSVDDPDH
RPTQRLPRGQQHPRATRSGGAPAGRRPAASNNNSGGSGGGRQPQNGRRVQ
QLNNPARTPRPAQQINGGRGGRVPYTAHGTPSATPMNSNRTKQQQQQQQQ
QQRRQPSSSSSPASPSTRGGSCNFDIATSSPPPAAAAAAAAPGLRRHNSA
PDMSLVGDDEQELPPPHNNNGDKASPRGGGTAGSTPQRAC
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mRNA from alignment at Ecto-sp8_S_contig973:15262..16664+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig973.31462.1 ID=mRNA_Ecto-sp8_S_contig973.31462.1|Name=mRNA_Ecto-sp8_S_contig973.31462.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1403bp|location=Sequence derived from alignment at Ecto-sp8_S_contig973:15262..16664+ (Ectocarpus species8 EcLAC_412)
GGGTCTGTTGTTGTTCCCGAGTATCTACTCGTTTTTGGGGGTGCTGGGGC
CGCATGGATTTTTTGAGAAACTTTCAAATGTGAATGTCCCGGTTCTCATT
TTCAGGGTCCTCTTCCTACTTGTCCTCAACGTGTCAGCACACACACACAC
CCGCGGCGCGCACACCCTCGCTCGCTCTTCTTCCTGCCGCCCTCCCCTTA
CCTTGCGAGAGAGCTTGCACACCCTTCTGTTGGACGGTTGAGAGAGAGAG
GGAGACAAGCAGTGTAGAAGGGGATAGATTCGGCGGAAAGATGCCACCTC
CGCCGAGCTCGACGCCAGCTCCATACTCGGGAACGTCAAGCGTCCGCGAA
CGAGCTCGTGCCTGGCAGGCGAGCTCGCCTCGCGCTGCTTCTCCGCCATC
CGGCAGCGTGAGCCCCCCGGTGGTGAAGGAGAAGGAGGTGCCGCCCACGA
TCGAAGAGATCGAGGCCATGGAGAAGGCTGACTGGGTGCAAGTAGCAGCA
GAAGCAGCAGCTGACCAGGAGGAGCCGTGCCGCACGCCAAGCGGCTCCAG
CTTGCCGCAGCTTGACAACAAGCAGACGCCCCGAACCTACAGCAGGCAGG
TCAGCCGGGTCTCCGGGACCGGGAGGGCGGCGAGGGCGAGCACGCCAAGA
GCCGCGGCCGCGGCAGCGGCCGCCGCGGCAGCGGCCGCGGCCGCTGCTGC
CGGAGACGCCGCTTCTGGAACCCAGAGAAGGGGACGCTCGCCACAGAAGC
CTCATCACCAGCAAGAAATTTCCAGGTCTCATTCTCAGCGCAGACTCCAC
CGCCGCTCTGTCTCCGTGGACGACCCCGACCACCGTCCCACGCAGCGGTT
ACCACGGGGGCAGCAGCACCCGAGGGCGACCAGAAGTGGAGGCGCTCCCG
CCGGCAGGAGGCCTGCCGCCAGCAACAACAACTCAGGCGGCAGCGGCGGC
GGGAGGCAGCCTCAGAACGGTCGACGCGTCCAGCAGCTCAACAACCCCGC
AAGGACGCCCAGACCGGCGCAGCAGATCAACGGAGGACGGGGAGGCCGCG
TCCCGTACACGGCGCACGGAACCCCGTCAGCGACACCGATGAACAGCAAC
AGGACGAAGCAGCAGCAGCAGCAGCAACAGCAACAGCAACGTCGACAACC
CTCCTCGTCTTCTTCTCCTGCTTCCCCGAGCACGCGTGGAGGATCGTGCA
ATTTCGACATCGCAACTTCGTCCCCGCCGCCGGCCGCCGCCGCAGCCGCC
GCTGCTCCTGGGCTGCGACGACACAACTCTGCACCAGACATGAGCCTGGT
TGGAGACGACGAGCAAGAGCTGCCTCCTCCGCACAACAACAACGGCGACA
AAGCCTCGCCACGCGGCGGCGGAACGGCCGGGAGCACACCCCAGCGAGCC
TGC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig973:15262..16664+

>mRNA_Ecto-sp8_S_contig973.31462.1 ID=mRNA_Ecto-sp8_S_contig973.31462.1|Name=mRNA_Ecto-sp8_S_contig973.31462.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1320bp|location=Sequence derived from alignment at Ecto-sp8_S_contig973:15262..16664+ (Ectocarpus species8 EcLAC_412)
ATGTCCCGGTTCTCATTTTCAGGGTCCTCTTCCTACTTGTCCTCAACGTG
TCAGCACACACACACACCCGCGGCGCGCACACCCTCGCTCGCTCTTCTTC
CTGCCGCCCTCCCCTTACCTTGCGAGAGAGCTTGCACACCCTTCTGTTGG
ACGGTTGAGAGAGAGAGGGAGACAAGCAGTGTAGAAGGGGATAGATTCGG
CGGAAAGATGCCACCTCCGCCGAGCTCGACGCCAGCTCCATACTCGGGAA
CGTCAAGCGTCCGCGAACGAGCTCGTGCCTGGCAGGCGAGCTCGCCTCGC
GCTGCTTCTCCGCCATCCGGCAGCGTGAGCCCCCCGGTGGTGAAGGAGAA
GGAGGTGCCGCCCACGATCGAAGAGATCGAGGCCATGGAGAAGGCTGACT
GGGTGCAAGTAGCAGCAGAAGCAGCAGCTGACCAGGAGGAGCCGTGCCGC
ACGCCAAGCGGCTCCAGCTTGCCGCAGCTTGACAACAAGCAGACGCCCCG
AACCTACAGCAGGCAGGTCAGCCGGGTCTCCGGGACCGGGAGGGCGGCGA
GGGCGAGCACGCCAAGAGCCGCGGCCGCGGCAGCGGCCGCCGCGGCAGCG
GCCGCGGCCGCTGCTGCCGGAGACGCCGCTTCTGGAACCCAGAGAAGGGG
ACGCTCGCCACAGAAGCCTCATCACCAGCAAGAAATTTCCAGGTCTCATT
CTCAGCGCAGACTCCACCGCCGCTCTGTCTCCGTGGACGACCCCGACCAC
CGTCCCACGCAGCGGTTACCACGGGGGCAGCAGCACCCGAGGGCGACCAG
AAGTGGAGGCGCTCCCGCCGGCAGGAGGCCTGCCGCCAGCAACAACAACT
CAGGCGGCAGCGGCGGCGGGAGGCAGCCTCAGAACGGTCGACGCGTCCAG
CAGCTCAACAACCCCGCAAGGACGCCCAGACCGGCGCAGCAGATCAACGG
AGGACGGGGAGGCCGCGTCCCGTACACGGCGCACGGAACCCCGTCAGCGA
CACCGATGAACAGCAACAGGACGAAGCAGCAGCAGCAGCAGCAACAGCAA
CAGCAACGTCGACAACCCTCCTCGTCTTCTTCTCCTGCTTCCCCGAGCAC
GCGTGGAGGATCGTGCAATTTCGACATCGCAACTTCGTCCCCGCCGCCGG
CCGCCGCCGCAGCCGCCGCTGCTCCTGGGCTGCGACGACACAACTCTGCA
CCAGACATGAGCCTGGTTGGAGACGACGAGCAAGAGCTGCCTCCTCCGCA
CAACAACAACGGCGACAAAGCCTCGCCACGCGGCGGCGGAACGGCCGGGA
GCACACCCCAGCGAGCCTGC
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