mRNA_Ecto-sp8_S_contig9727.31460.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9727.31460.1
Unique NamemRNA_Ecto-sp8_S_contig9727.31460.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9727.31460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9727contigEcto-sp8_S_contig9727:53..835 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size784
Hectar predicted targeting categoryother localisation
Exons1
Cds size606
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145338.2037134-CDS-Ecto-sp8_S_contig9727:52..6581681145338.2037134-CDS-Ecto-sp8_S_contig9727:52..658Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9727 53..658 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145338.2152178-UTR-Ecto-sp8_S_contig9727:658..8351681145338.2152178-UTR-Ecto-sp8_S_contig9727:658..835Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9727 659..835 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9727.31460.1prot_Ecto-sp8_S_contig9727.31460.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9727 53..658 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9727.31460.1

>prot_Ecto-sp8_S_contig9727.31460.1 ID=prot_Ecto-sp8_S_contig9727.31460.1|Name=mRNA_Ecto-sp8_S_contig9727.31460.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=202bp
AGVDVLGCCCGNRPESSALDSLACPLELLRFFVRSEGGNGKGRGAGTHTT
PTPTEPIVDPVVAPWSCWPWDERCVFHAVLATQTPLADEWRQENCRCSGD
SPLHPFVSAKPGDLLTFLVVRLLLLLLLLLLSSVGLPGSRWGTPGMQCQA
LLLMLFDFCECLGGFHLVLDTIVGLSKVQDGGGLSLILACIFSHLRFLFG
G*
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mRNA from alignment at Ecto-sp8_S_contig9727:53..835+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9727.31460.1 ID=mRNA_Ecto-sp8_S_contig9727.31460.1|Name=mRNA_Ecto-sp8_S_contig9727.31460.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=783bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9727:53..835+ (Ectocarpus species8 EcLAC_412)
GCTGGTGTTGATGTGTTGGGGTGTTGCTGCGGAAACCGTCCGGAGAGCAG
TGCGCTTGACTCACTTGCCTGCCCTCTCGAATTGCTTCGGTTTTTTGTGA
GGAGCGAGGGGGGCAATGGTAAAGGGAGGGGAGCGGGGACTCACACTACG
CCTACACCAACGGAGCCGATAGTTGATCCAGTTGTTGCCCCATGGTCCTG
CTGGCCATGGGACGAGCGCTGTGTATTCCACGCTGTGCTTGCCACCCAAA
CCCCGTTGGCTGACGAATGGCGGCAAGAGAACTGTCGCTGCAGCGGCGAT
TCCCCTCTCCATCCCTTTGTCTCTGCAAAGCCAGGAGATTTGCTCACCTT
CTTGGTTGTTCGACTACTACTACTACTACTACTACTACTACTGTCGTCGG
TTGGCTTGCCGGGCAGCCGTTGGGGGACGCCGGGCATGCAGTGCCAGGCA
CTGCTGTTAATGTTGTTTGATTTTTGCGAATGCTTAGGCGGATTTCATCT
AGTCTTAGATACAATTGTGGGCCTTTCCAAGGTGCAAGACGGCGGCGGGC
TGTCTCTGATCCTGGCGTGTATTTTTTCCCATCTTCGGTTTCTATTTGGT
GGGTAGGGGTCGGAAGCGTTGTCAGAGTCTCCTAACAAAAACAAACGCTC
TTGGTTGAGAGCTGCTTCGTGTACGTTGAGGTACGCCAGCACGTAGCCTG
CGATATATAGAGTGCGGGGGAATGGTCTTACGAGAGGATGAGCGTTGTTG
AGATGACGAATGAAGTATTTGTTTTTTGTCCTG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9727:53..835+

>mRNA_Ecto-sp8_S_contig9727.31460.1 ID=mRNA_Ecto-sp8_S_contig9727.31460.1|Name=mRNA_Ecto-sp8_S_contig9727.31460.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=606bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9727:53..835+ (Ectocarpus species8 EcLAC_412)
GCTGGTGTTGATGTGTTGGGGTGTTGCTGCGGAAACCGTCCGGAGAGCAG
TGCGCTTGACTCACTTGCCTGCCCTCTCGAATTGCTTCGGTTTTTTGTGA
GGAGCGAGGGGGGCAATGGTAAAGGGAGGGGAGCGGGGACTCACACTACG
CCTACACCAACGGAGCCGATAGTTGATCCAGTTGTTGCCCCATGGTCCTG
CTGGCCATGGGACGAGCGCTGTGTATTCCACGCTGTGCTTGCCACCCAAA
CCCCGTTGGCTGACGAATGGCGGCAAGAGAACTGTCGCTGCAGCGGCGAT
TCCCCTCTCCATCCCTTTGTCTCTGCAAAGCCAGGAGATTTGCTCACCTT
CTTGGTTGTTCGACTACTACTACTACTACTACTACTACTACTGTCGTCGG
TTGGCTTGCCGGGCAGCCGTTGGGGGACGCCGGGCATGCAGTGCCAGGCA
CTGCTGTTAATGTTGTTTGATTTTTGCGAATGCTTAGGCGGATTTCATCT
AGTCTTAGATACAATTGTGGGCCTTTCCAAGGTGCAAGACGGCGGCGGGC
TGTCTCTGATCCTGGCGTGTATTTTTTCCCATCTTCGGTTTCTATTTGGT
GGGTAG
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