mRNA_Ecto-sp8_S_contig9725.31458.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9725.31458.1
Unique NamemRNA_Ecto-sp8_S_contig9725.31458.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9725.31458.1 vs. uniprot
Match: D7FN01_ECTSI (Hpt domain protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN01_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 4.490e-28
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 3 
Query:  453 MEKPGDGDKKASEKSSDQGSSANLVGVQLGVPDDTEVIDWAAAVDQCSGDVSFLEELLVD 632
            MEK GDGDKKASEKSSDQGSSANLVGVQLGVPDDTEVIDWAAAVDQCSGDVSFLEELLVD
Sbjct:    1 MEKAGDGDKKASEKSSDQGSSANLVGVQLGVPDDTEVIDWAAAVDQCSGDVSFLEELLVD 60
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9725.31458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FN01_ECTSI4.490e-2898.33Hpt domain protein n=2 Tax=Ectocarpus TaxID=2879 R... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9725contigEcto-sp8_S_contig9725:1..1545 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score115.2
Seed ortholog evalue1.1e-23
Seed eggNOG ortholog2880.D7FN01
Model size632
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs2EUJB@1,2SWQ8@2759
Cds size180
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145337.9752011-CDS-Ecto-sp8_S_contig9725:0..421681145337.9752011-CDS-Ecto-sp8_S_contig9725:0..42Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9725 1..42 -
1681145337.9886892-CDS-Ecto-sp8_S_contig9725:490..5891681145337.9886892-CDS-Ecto-sp8_S_contig9725:490..589Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9725 491..589 -
1681145337.9992397-CDS-Ecto-sp8_S_contig9725:1054..10931681145337.9992397-CDS-Ecto-sp8_S_contig9725:1054..1093Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9725 1055..1093 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145338.011163-UTR-Ecto-sp8_S_contig9725:1093..15451681145338.011163-UTR-Ecto-sp8_S_contig9725:1093..1545Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9725 1094..1545 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9725.31458.1prot_Ecto-sp8_S_contig9725.31458.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9725 1..1093 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9725.31458.1

>prot_Ecto-sp8_S_contig9725.31458.1 ID=prot_Ecto-sp8_S_contig9725.31458.1|Name=mRNA_Ecto-sp8_S_contig9725.31458.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=60bp
MEKPGDGDKKASEKSSDQGSSANLVGVQLGVPDDTEVIDWAAAVDQCSGD
VSFLEELLVD
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mRNA from alignment at Ecto-sp8_S_contig9725:1..1545-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9725.31458.1 ID=mRNA_Ecto-sp8_S_contig9725.31458.1|Name=mRNA_Ecto-sp8_S_contig9725.31458.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1545bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9725:1..1545- (Ectocarpus species8 EcLAC_412)
ATGATGTCCATGAGATCGCTTCTTGTGCGCTGCAGGACGGCTGAGCGAGT
CGTTCTCGGAGCAGCCCCGAACATTTATTGCATATCCGCACATCCGCGTT
TTTTAAGCAGATTCCGGCGAGAACATCAACAGTGACTCCGTGCCAAGTGG
CTCCCGATCCCGGGAAATTTGACACGGCGCTCAGTCTACCTCAAGACAAG
GAAGGGGAACTCCGCGCAACCGTCGAGCCCGCACAACAAAGCGCGTCCGT
GGGCGACGACTCTTTGGTTCAACATCACCCACCAGCGGAAGCGGCAACGG
CAACGGTAAGAGCGGCGGAAGCGCAAGCGCTCAACGTCGATTCTTCTCCC
GAGCAAATCAACCTCAGCACAGCGAGTAGCGAAGATCCCCGATCTGCTAC
CCCTGTTCCGAAAGAGGAGGTAAAGGCGTCGAGTCAGCAGCCGGACGGCA
ACATGGAGAAGCCGGGTGACGGAGACAAGAAAGCGTCCGAGGTAGCGGTG
GCAGCACAGGTATGTGTGTTGATTAAACAGGAGAGTATCCTTGTTGACAT
TGCGTGTTTTACCTTCCTCGTAAGGATGTCCGAACCTTCCAGTTTTCAAT
GCTTTCGGAACTAGATATGGTTCTTCCATTATTTCCTCTGACGCACCCAC
TGCGTCTAGCGAAGGATTGCACGGCTCTTGCCGATAGTACTAGCTTGCTC
GATACACGGACGTGCATGCTGTGCCCTGGACCCTCTGTGATAAAGATTTC
GCGTGGCTGTCTTGCACGGTGCCACCATCGTACGGGAGCATTCCAACACG
TCAGACGATTCCACGTCACAGGTAAAGTGCGACGGGGCCTGAATGTGTGT
CGAATAAATGCACCACCGCTCTTGCTTCTACCATGGGTGAAACAAGCTGC
TGCTGATGCGCTGATTCACCGCCGGCCGTCCGTCGTGGTAACGTATACTG
CTGTAGAAGTCCAGCGACCAAGGGAGTTCGGCAAATCTCGTAGGAGTGCA
GCTAGGAGTGCCGGATGACACGGAGGTCATTGATTGGGCCGCGGCCGTCG
ATCAGGTACTTGTACGTTGCGGTGGTTGAAGGTGCGGCATGTGGGTCGGA
GATGGTAGTCACGTGAGACTTGGATTCATACGCCACAAATTATCTCCTTT
GGTTGTGTTGTTTTACGATGTGCATGGATGCCAGATGCAGTAGCAAAGCT
TATTGTAGCTCGCCTCACGCGTGCAGCTCGTTCTGCTCCCATGTGGAAGC
TCTTAAAACTGACAACACTACCGAAATGAATAGACAGTAAACACGCTTGT
GTGCCGACATCTCCGGAGCGAATTTATGTCACCCGATTCCCCTCTCTAGC
GCTAACGGGTGGATCTCAGGGCCTCTTTTGAACATTGTTCACATCGGCAG
ACAGATAGACTTGAGTGAGGTTGACATCCGCCAGAGCACGTTCATGTCGC
TGACCTCCCCGCTGTTGTCGACCGTTTGGCCTACGTTTCGCGCCACGAAA
CAGTGTTCGGGAGACGTTTCTTTCCTTGAGGAACTGCTTGTGGAC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9725:1..1545-

>mRNA_Ecto-sp8_S_contig9725.31458.1 ID=mRNA_Ecto-sp8_S_contig9725.31458.1|Name=mRNA_Ecto-sp8_S_contig9725.31458.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=180bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9725:1..1545- (Ectocarpus species8 EcLAC_412)
ATGGAGAAGCCGGGTGACGGAGACAAGAAAGCGTCCGAGAAGTCCAGCGA
CCAAGGGAGTTCGGCAAATCTCGTAGGAGTGCAGCTAGGAGTGCCGGATG
ACACGGAGGTCATTGATTGGGCCGCGGCCGTCGATCAGTGTTCGGGAGAC
GTTTCTTTCCTTGAGGAACTGCTTGTGGAC
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