mRNA_Ecto-sp8_S_contig97244.31456.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig97244.31456.1
Unique NamemRNA_Ecto-sp8_S_contig97244.31456.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig97244.31456.1 vs. uniprot
Match: D8LH14_ECTSI (PHM7_cyt domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH14_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 5.010e-22
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:    1 YSAGIPILLPIGTLSFVLFYWVEKALFVNFYLTPPQYSGKLTNEVV 138
            YSAGIPILLPIGTLSFVLFYWVEKALFVNFYLTPPQYSGKLTNEVV
Sbjct:  765 YSAGIPILLPIGTLSFVLFYWVEKALFVNFYLTPPQYSGKLTNEVV 810
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BLAST of mRNA_Ecto-sp8_S_contig97244.31456.1 vs. uniprot
Match: A0A6U1MHI4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MHI4_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 2.810e-10
Identity = 26/46 (56.52%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    1 YSAGIPILLPIGTLSFVLFYWVEKALFVNFYLTPPQYSGKLTNEVV 138
            +SAGIP+LLPIG +S ++FYW EK  F+++Y TPP +S KL + VV
Sbjct:    9 FSAGIPVLLPIGCVSAIVFYWFEKYFFIHYYRTPPNFSSKLVDYVV 54
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BLAST of mRNA_Ecto-sp8_S_contig97244.31456.1 vs. uniprot
Match: A0A812RF17_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812RF17_9DINO)

HSP 1 Score: 50.1 bits (118), Expect = 9.400e-6
Identity = 20/41 (48.78%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    1 YSAGIPILLPIGTLSFVLFYWVEKALFVNFYLTPPQYSGKL 123
            +S G+PILLP+  +SF++ +WV+K LF   Y TPP+Y  +L
Sbjct:  794 FSTGLPILLPVAMVSFIVSFWVDKFLFAYVYRTPPRYGPEL 834
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BLAST of mRNA_Ecto-sp8_S_contig97244.31456.1 vs. uniprot
Match: A0A7R9U1E9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1E9_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 3.260e-5
Identity = 21/41 (51.22%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    1 YSAGIPILLPIGTLSFVLFYWVEKALFVNFYLTPPQYSGKL 123
            YSAG+P+L  I  LS ++FYWV+K +F+  + TPP YS +L
Sbjct:  282 YSAGMPMLNVICFLSMLIFYWVDKLMFLRLWRTPPYYSARL 322
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BLAST of mRNA_Ecto-sp8_S_contig97244.31456.1 vs. uniprot
Match: A0A7S1U562_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U562_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 4.350e-5
Identity = 22/47 (46.81%), Postives = 30/47 (63.83%), Query Frame = 1 
Query:    1 YSAGIPILLPIGTLSFVLFYWVEKALFVNFYLTPPQYSGKLTNEVVR 141
            YS GIP+L  +   S +LFYWV+K +F+  + TPP YS KL  E  +
Sbjct:   72 YSTGIPMLHVVCFGSMLLFYWVDKIMFLRLWRTPPYYSNKLGEEAAQ 118
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BLAST of mRNA_Ecto-sp8_S_contig97244.31456.1 vs. uniprot
Match: A0A7S1CGS6_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CGS6_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 6.160e-5
Identity = 20/47 (42.55%), Postives = 28/47 (59.57%), Query Frame = 1 
Query:    1 YSAGIPILLPIGTLSFVLFYWVEKALFVNFYLTPPQYSGKLTNEVVR 141
            YS G+P+L  +    F+  +WV+KALFV FY TPP Y+       +R
Sbjct:  511 YSTGLPLLYIVALFYFLSVFWVDKALFVKFYRTPPTYTDAFARATMR 557
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig97244.31456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LH14_ECTSI5.010e-22100.00PHM7_cyt domain-containing protein n=2 Tax=Ectocar... [more]
A0A6U1MHI4_9STRA2.810e-1056.52Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A812RF17_9DINO9.400e-648.78Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A7R9U1E9_9STRA3.260e-551.22Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S1U562_9STRA4.350e-546.81Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1CGS6_9STRA6.160e-542.55Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig97244contigEcto-sp8_S_contig97244:428..571 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score97.4
Seed ortholog evalue1.9e-18
Seed eggNOG ortholog2880.D8LH14
Model size144
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG OGs2CY1P@1,2S1C7@2759
Cds size144
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145337.8684058-CDS-Ecto-sp8_S_contig97244:427..5711681145337.8684058-CDS-Ecto-sp8_S_contig97244:427..571Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig97244 428..571 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig97244.31456.1prot_Ecto-sp8_S_contig97244.31456.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig97244 428..571 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig97244.31456.1

>prot_Ecto-sp8_S_contig97244.31456.1 ID=prot_Ecto-sp8_S_contig97244.31456.1|Name=mRNA_Ecto-sp8_S_contig97244.31456.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=48bp
YSAGIPILLPIGTLSFVLFYWVEKALFVNFYLTPPQYSGKLTNEVVR*
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mRNA from alignment at Ecto-sp8_S_contig97244:428..571-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig97244.31456.1 ID=mRNA_Ecto-sp8_S_contig97244.31456.1|Name=mRNA_Ecto-sp8_S_contig97244.31456.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=144bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97244:428..571- (Ectocarpus species8 EcLAC_412)
TACTCTGCGGGCATCCCCATCCTGCTGCCCATCGGGACGCTTTCTTTCGT
GCTCTTCTACTGGGTGGAGAAGGCGCTTTTCGTTAACTTCTACCTCACAC
CGCCACAGTACTCCGGCAAGCTTACCAATGAGGTTGTAAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig97244:428..571-

>mRNA_Ecto-sp8_S_contig97244.31456.1 ID=mRNA_Ecto-sp8_S_contig97244.31456.1|Name=mRNA_Ecto-sp8_S_contig97244.31456.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97244:428..571- (Ectocarpus species8 EcLAC_412)
TACTCTGCGGGCATCCCCATCCTGCTGCCCATCGGGACGCTTTCTTTCGT
GCTCTTCTACTGGGTGGAGAAGGCGCTTTTCGTTAACTTCTACCTCACAC
CGCCACAGTACTCCGGCAAGCTTACCAATGAGGTTGTAAGGTGA
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