mRNA_Ecto-sp8_S_contig97237.31454.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig97237.31454.1
Unique NamemRNA_Ecto-sp8_S_contig97237.31454.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig97237.31454.1 vs. uniprot
Match: A0A0U2V6S1_9MAXI (60S ribosomal protein L22 n=2 Tax=Pseudodiaptomus poplesia TaxID=213370 RepID=A0A0U2V6S1_9MAXI)

HSP 1 Score: 227 bits (579), Expect = 1.720e-74
Identity = 116/139 (83.45%), Postives = 128/139 (92.09%), Query Frame = 1
Query:   10 AKKQVKKPGKQPLKGKGKAVKKLGKKNQIKLFIDCTHPVEDGIMNCADFEKYLHERIKVGGKTNNFGKELTMERQKTKIALTSDVPFSKRYLKYLTKKYLKKNNLRDWLRVVASAKDSYELRYFQINNEESEDEDEDAE 426
            AK   KKPGKQ LKGKGK +KKLGKKNQIKL IDCTHPVEDGIMNCADFE+YL ERIKVGGKT+NFG ++T+E+ KTKI LTS++PFSKRYLKYLTKKYLKKNNLRDWLRVVAS+KD+YELRYFQINNEESEDE+ED E
Sbjct:    6 AKATGKKPGKQALKGKGKGIKKLGKKNQIKLVIDCTHPVEDGIMNCADFERYLQERIKVGGKTSNFGNDITLEKLKTKIQLTSNIPFSKRYLKYLTKKYLKKNNLRDWLRVVASSKDAYELRYFQINNEESEDEEEDNE 144          
BLAST of mRNA_Ecto-sp8_S_contig97237.31454.1 vs. uniprot
Match: A0A0U2UTS8_9MAXI (60S ribosomal protein L22 n=3 Tax=Calanoida TaxID=6833 RepID=A0A0U2UTS8_9MAXI)

HSP 1 Score: 224 bits (572), Expect = 1.640e-73
Identity = 115/135 (85.19%), Postives = 125/135 (92.59%), Query Frame = 1
Query:   22 VKKPGKQPLKGKGKAVKKLGKKNQIKLFIDCTHPVEDGIMNCADFEKYLHERIKVGGKTNNFGKELTMERQKTKIALTSDVPFSKRYLKYLTKKYLKKNNLRDWLRVVASAKDSYELRYFQINNEESEDEDEDAE 426
             K PGKQ LKGKGK VKKLGKKNQIKL IDCTHPVEDGIMNCADFEKYL ERIKVGGKT+NFG ++++ER KTKI LTS+VPFSKRYLKYLTKKYLKKNNLRDWLRVVASAKD+YELRYFQINNEES++ED+D E
Sbjct:    4 TKTPGKQALKGKGKGVKKLGKKNQIKLVIDCTHPVEDGIMNCADFEKYLQERIKVGGKTSNFGNDVSLERAKTKINLTSNVPFSKRYLKYLTKKYLKKNNLRDWLRVVASAKDAYELRYFQINNEESDNEDDDNE 138          
BLAST of mRNA_Ecto-sp8_S_contig97237.31454.1 vs. uniprot
Match: UPI000C7585F3 (60S ribosomal protein L22-like isoform X2 n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C7585F3)

HSP 1 Score: 219 bits (558), Expect = 2.230e-71
Identity = 113/133 (84.96%), Postives = 121/133 (90.98%), Query Frame = 1
Query:   28 KPGKQPLKGKGKAVKKLGKKNQIKLFIDCTHPVEDGIMNCADFEKYLHERIKVGGKTNNFGKELTMERQKTKIALTSDVPFSKRYLKYLTKKYLKKNNLRDWLRVVASAKDSYELRYFQINNEESEDEDEDAE 426
            KPGKQ LKGK   +KKLGKKNQIKL IDCTHPVEDGIMNCADFEKYL ERIKVGGKT+NFG +L +ER KTKI LTS+VPFSKRYLKYLTKKYLKKNNLRDWLRVVAS KDSYELRYFQINNEES++E+ED E
Sbjct:    6 KPGKQSLKGKKGGIKKLGKKNQIKLVIDCTHPVEDGIMNCADFEKYLQERIKVGGKTSNFGSDLVLERAKTKINLTSNVPFSKRYLKYLTKKYLKKNNLRDWLRVVASTKDSYELRYFQINNEESDNEEEDNE 138          
BLAST of mRNA_Ecto-sp8_S_contig97237.31454.1 vs. uniprot
Match: R9TIQ9_ACAPC (60S ribosomal protein L22 n=2 Tax=Acartia pacifica TaxID=335913 RepID=R9TIQ9_ACAPC)

HSP 1 Score: 216 bits (550), Expect = 3.820e-70
Identity = 110/134 (82.09%), Postives = 122/134 (91.04%), Query Frame = 1
Query:   19 QVKKPGKQPLKGKGKAVKKLGKKNQIKLFIDCTHPVEDGIMNCADFEKYLHERIKVGGKTNNFGKELTMERQKTKIALTSDVPFSKRYLKYLTKKYLKKNNLRDWLRVVASAKDSYELRYFQINNEESEDEDED 420
            +V  PGKQ LKGK K VKKLGKKNQ+KL +DCTHPVEDGIMNCADFEKYL ERIKVGGKTNNFG ++ ++R KTKI +TS++PFSKRYLKYLTKKYLKKNNLRDWLRVVASAKDSYELRYFQINN+ES+ EDED
Sbjct:    4 KVNAPGKQALKGKKKGVKKLGKKNQMKLVLDCTHPVEDGIMNCADFEKYLLERIKVGGKTNNFGNDVLLKRDKTKINVTSNIPFSKRYLKYLTKKYLKKNNLRDWLRVVASAKDSYELRYFQINNDESDAEDED 137          
BLAST of mRNA_Ecto-sp8_S_contig97237.31454.1 vs. uniprot
Match: D3PFN6_LEPSM (60S ribosomal protein L22 n=2 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=D3PFN6_LEPSM)

HSP 1 Score: 183 bits (465), Expect = 4.500e-57
Identity = 94/141 (66.67%), Postives = 114/141 (80.85%), Query Frame = 1
Query:    7 PAKKQV-KKPGKQPLKGKGKAVKKLGKKNQIKLFIDCTHPVEDGIMNCADFEKYLHERIKVGGKTNNFGKELTMERQKTKIALTSDVPFSKRYLKYLTKKYLKKNNLRDWLRVVASAKDSYELRYFQINNEESEDEDEDAE 426
            P KK   KKPGKQ L+GK K+ K  GKK+ +K  +DCTHPVEDGI NC DFE YL +RIKV GK  NFGK++++ER++ KI ++S VPFSKRYLKYL KKY+KKNNLRDWLR+VAS+KDSYELRYF INN++  D+DED E
Sbjct:    9 PVKKSTGKKPGKQALRGKSKSGK--GKKSVLKFVVDCTHPVEDGIFNCFDFESYLRDRIKVNGKLKNFGKDVSLERERNKIVISSSVPFSKRYLKYLAKKYMKKNNLRDWLRIVASSKDSYELRYFNINNDDDGDDDEDVE 147          
BLAST of mRNA_Ecto-sp8_S_contig97237.31454.1 vs. uniprot
Match: T1IVD1_STRMM (Uncharacterized protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1IVD1_STRMM)

HSP 1 Score: 180 bits (456), Expect = 8.690e-56
Identity = 92/130 (70.77%), Postives = 107/130 (82.31%), Query Frame = 1
Query:   10 AKKQVKKPGKQPLKGKGKAVKKLGKKNQIKLFIDCTHPVEDGIMNCADFEKYLHERIKVGGKTNNFGKELTMERQKTKIALTSDVPFSKRYLKYLTKKYLKKNNLRDWLRVVASAKDSYELRYFQINNEE 399
            A K+  KPGK   KGKGK      KK Q+K  IDC+HPVEDGIMN +DFEK+LH+RIKV GKT N GK++++ER K+K+ LTSD+ FSKRYLKYLTKKYLKKNNLRDWLRVVA+ KD+YELRYFQINNEE
Sbjct:   10 AAKKPSKPGKPQQKGKGKK-----KKTQLKFSIDCSHPVEDGIMNASDFEKFLHDRIKVNGKTKNLGKDISIERNKSKVNLTSDIAFSKRYLKYLTKKYLKKNNLRDWLRVVATTKDAYELRYFQINNEE 134          
BLAST of mRNA_Ecto-sp8_S_contig97237.31454.1 vs. uniprot
Match: UPI001B889711 (60S ribosomal protein L22-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B889711)

HSP 1 Score: 176 bits (447), Expect = 1.580e-54
Identity = 92/132 (69.70%), Postives = 109/132 (82.58%), Query Frame = 1
Query:   16 KQVKKPGKQPLKGKGKAVKKLGKKNQIKLFIDCTHPVEDGIMNCADFEKYLHERIKVGGKTNNFGKELTMERQKTKIALTSDVPFSKRYLKYLTKKYLKKNNLRDWLRVVASAKDSYELRYFQINNEESEDE 411
            K VK+PGK    GKGK      K+  ++  +DCTHPVEDGIM+ A+FEKYLHERIKV GKTNNFG  L++ERQK KI LTS++PFSKRYLKYLTKKYLKKNNLRDWLRVVAS+K+++ELRYFQIN +E E+E
Sbjct:    6 KNVKRPGKIAT-GKGKK-----KRTTLRYIVDCTHPVEDGIMDVANFEKYLHERIKVEGKTNNFGHNLSLERQKNKIVLTSEIPFSKRYLKYLTKKYLKKNNLRDWLRVVASSKEAFELRYFQINQDEEEEE 131          
BLAST of mRNA_Ecto-sp8_S_contig97237.31454.1 vs. uniprot
Match: E3P7F4_LEPCI (Ribosomal protein L22 n=1 Tax=Lepidochitona cinerea TaxID=256056 RepID=E3P7F4_LEPCI)

HSP 1 Score: 176 bits (446), Expect = 2.240e-54
Identity = 96/138 (69.57%), Postives = 112/138 (81.16%), Query Frame = 1
Query:   16 KQVKKPGKQPLKG-KGKAVKKLGKKNQIKLFIDCTHPVEDGIMNCADFEKYLHERIKVGGKTNNFGKELTMERQKTKIALTSDVPFSKRYLKYLTKKYLKKNNLRDWLRVVASAKDSYELRYFQINNEESEDEDEDAE 426
            K VK+ GK+ + G KGK      KK  ++  +DCTHPVEDGIM+CA+FEK+LHERIKV GK NNFG  +++ER K+KI L SD+PFSKRYLKYLTKKYLKKNNLRDWLRVVA+ KDSYELRYFQINNE   DE+EDAE
Sbjct:    4 KPVKRVGKKTVGGSKGKK-----KKTTLRYTLDCTHPVEDGIMDCANFEKFLHERIKVAGKMNNFGNNVSLERNKSKITLISDIPFSKRYLKYLTKKYLKKNNLRDWLRVVANQKDSYELRYFQINNE---DEEEDAE 133          
BLAST of mRNA_Ecto-sp8_S_contig97237.31454.1 vs. uniprot
Match: A0A2B4SCA5_STYPI (60S ribosomal protein L22 n=3 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4SCA5_STYPI)

HSP 1 Score: 175 bits (444), Expect = 4.230e-54
Identity = 84/117 (71.79%), Postives = 104/117 (88.89%), Query Frame = 1
Query:   70 KKLGKKNQIKLFIDCTHPVEDGIMNCADFEKYLHERIKVGGKTNNFGKELTMERQKTKIALTSDVPFSKRYLKYLTKKYLKKNNLRDWLRVVASAKDSYELRYFQINNEESEDEDED 420
            K+  KK Q+K  +DCTHPVEDGIM+ A+FE++LHERIKVGGKTNNFG +++++RQK KI + SD+PFSKRYLKYLTKKYLKKNNLRDWLRVV+SA+ +YELRYFQINNE+ ++E ED
Sbjct:   14 KQQKKKTQLKFTVDCTHPVEDGIMDVANFEQFLHERIKVGGKTNNFGSDVSIDRQKNKITVVSDIPFSKRYLKYLTKKYLKKNNLRDWLRVVSSAQATYELRYFQINNEDEDEEGED 130          
BLAST of mRNA_Ecto-sp8_S_contig97237.31454.1 vs. uniprot
Match: C1C0P3_CALCM (60S ribosomal protein L22 n=1 Tax=Caligus clemensi TaxID=344056 RepID=C1C0P3_CALCM)

HSP 1 Score: 175 bits (444), Expect = 6.830e-54
Identity = 86/124 (69.35%), Postives = 104/124 (83.87%), Query Frame = 1
Query:   25 KKPGKQPLKGKGKAVKKLGKKNQIKLFIDCTHPVEDGIMNCADFEKYLHERIKVGGKTNNFGKELTMERQKTKIALTSDVPFSKRYLKYLTKKYLKKNNLRDWLRVVASAKDSYELRYFQINNE 396
            KKPGKQ L+GK K+ K  GKK+ +K  IDC+HPVEDGI NC+DFE YL +RIKV GK  NFGK++++ER+K KI ++S VPFSKRYLKYL KKY+KKNNLRDWLR+VAS KD+YELRYF INN+
Sbjct:   15 KKPGKQMLRGKSKSGK--GKKSLLKFVIDCSHPVEDGIFNCSDFESYLRDRIKVNGKLKNFGKDVSLEREKNKIVVSSSVPFSKRYLKYLAKKYMKKNNLRDWLRIVASGKDAYELRYFNINND 136          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig97237.31454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0U2V6S1_9MAXI1.720e-7483.4560S ribosomal protein L22 n=2 Tax=Pseudodiaptomus ... [more]
A0A0U2UTS8_9MAXI1.640e-7385.1960S ribosomal protein L22 n=3 Tax=Calanoida TaxID=... [more]
UPI000C7585F32.230e-7184.9660S ribosomal protein L22-like isoform X2 n=1 Tax=... [more]
R9TIQ9_ACAPC3.820e-7082.0960S ribosomal protein L22 n=2 Tax=Acartia pacifica... [more]
D3PFN6_LEPSM4.500e-5766.6760S ribosomal protein L22 n=2 Tax=Lepeophtheirus s... [more]
T1IVD1_STRMM8.690e-5670.77Uncharacterized protein n=1 Tax=Strigamia maritima... [more]
UPI001B8897111.580e-5469.7060S ribosomal protein L22-like n=1 Tax=Gigantopelt... [more]
E3P7F4_LEPCI2.240e-5469.57Ribosomal protein L22 n=1 Tax=Lepidochitona cinere... [more]
A0A2B4SCA5_STYPI4.230e-5471.7960S ribosomal protein L22 n=3 Tax=Pocilloporidae T... [more]
C1C0P3_CALCM6.830e-5469.3560S ribosomal protein L22 n=1 Tax=Caligus clemensi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig97237contigEcto-sp8_S_contig97237:42..470 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeArthropoda
Stop1
Start1
Seed ortholog score183.0
Seed ortholog evalue1e-43
Seed eggNOG ortholog126957.SMAR005128-PA
Preferred nameRpL22
Model size429
KEGG koko:K02891
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons1
EggNOG free text desc.Structural constituent of ribosome. It is involved in the biological process described with
EggNOG OGs3A5RD@33154,3BPIF@33208,3D6B8@33213,41ZWF@6656,KOG3434@1,KOG3434@2759
Cds size429
COG Functional cat.J
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145337.7669904-CDS-Ecto-sp8_S_contig97237:41..4701681145337.7669904-CDS-Ecto-sp8_S_contig97237:41..470Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig97237 42..470 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig97237.31454.1prot_Ecto-sp8_S_contig97237.31454.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig97237 42..470 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig97237.31454.1

>prot_Ecto-sp8_S_contig97237.31454.1 ID=prot_Ecto-sp8_S_contig97237.31454.1|Name=mRNA_Ecto-sp8_S_contig97237.31454.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=143bp
MAPAKKQVKKPGKQPLKGKGKAVKKLGKKNQIKLFIDCTHPVEDGIMNCA
DFEKYLHERIKVGGKTNNFGKELTMERQKTKIALTSDVPFSKRYLKYLTK
KYLKKNNLRDWLRVVASAKDSYELRYFQINNEESEDEDEDAE*
back to top

mRNA from alignment at Ecto-sp8_S_contig97237:42..470-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig97237.31454.1 ID=mRNA_Ecto-sp8_S_contig97237.31454.1|Name=mRNA_Ecto-sp8_S_contig97237.31454.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=429bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97237:42..470- (Ectocarpus species8 EcLAC_412)
ATGGCTCCAGCAAAGAAACAAGTCAAGAAGCCCGGCAAGCAGCCACTCAA GGGAAAGGGTAAGGCCGTAAAGAAGCTTGGCAAGAAGAACCAGATCAAGC TCTTCATTGACTGCACCCACCCTGTCGAGGATGGCATCATGAACTGCGCC GACTTCGAGAAGTATCTTCATGAGCGTATCAAGGTTGGAGGCAAGACCAA CAACTTCGGTAAGGAGCTGACCATGGAGAGGCAGAAGACCAAGATCGCCC TCACCTCGGATGTCCCCTTCTCCAAGAGGTACCTGAAGTACCTGACAAAG AAGTACCTCAAGAAGAACAACTTGAGGGATTGGCTCCGTGTTGTTGCCTC AGCCAAGGACAGCTACGAGCTGAGGTACTTCCAGATCAACAACGAGGAGT CCGAGGATGAGGACGAGGATGCCGAATAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig97237:42..470-

>mRNA_Ecto-sp8_S_contig97237.31454.1 ID=mRNA_Ecto-sp8_S_contig97237.31454.1|Name=mRNA_Ecto-sp8_S_contig97237.31454.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=429bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97237:42..470- (Ectocarpus species8 EcLAC_412)
ATGGCTCCAGCAAAGAAACAAGTCAAGAAGCCCGGCAAGCAGCCACTCAA
GGGAAAGGGTAAGGCCGTAAAGAAGCTTGGCAAGAAGAACCAGATCAAGC
TCTTCATTGACTGCACCCACCCTGTCGAGGATGGCATCATGAACTGCGCC
GACTTCGAGAAGTATCTTCATGAGCGTATCAAGGTTGGAGGCAAGACCAA
CAACTTCGGTAAGGAGCTGACCATGGAGAGGCAGAAGACCAAGATCGCCC
TCACCTCGGATGTCCCCTTCTCCAAGAGGTACCTGAAGTACCTGACAAAG
AAGTACCTCAAGAAGAACAACTTGAGGGATTGGCTCCGTGTTGTTGCCTC
AGCCAAGGACAGCTACGAGCTGAGGTACTTCCAGATCAACAACGAGGAGT
CCGAGGATGAGGACGAGGATGCCGAATAA
back to top