mRNA_Ecto-sp8_S_contig97200.31449.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig97200.31449.1
Unique NamemRNA_Ecto-sp8_S_contig97200.31449.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig97200.31449.1 vs. uniprot
Match: A0A7X2FWH4_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium HT1-32 TaxID=2665153 RepID=A0A7X2FWH4_9PROT)

HSP 1 Score: 178 bits (451), Expect = 2.170e-50
Identity = 82/113 (72.57%), Postives = 94/113 (83.19%), Query Frame = 1
Query:    1 RMNDEPIKLRPANENPWYVLATYHGEQKEGHIDDDLHAKNREVWNRWIATTLSHDDRQKLIDEERATAANMKPFSAEERRELWAGCRSPDLPTPDPATGITFSDTLFARHVSF 339
            RM D+ IKLRPANENPWYVLATYHGEQ     D+DLHAKNR++WNRW+A  LS +DRQKLIDEERATAA +KPFSAE+RRELWA  RS +LP PDPAT I F++T+FA  VSF
Sbjct:  115 RMTDDQIKLRPANENPWYVLATYHGEQTGDEFDEDLHAKNRDIWNRWMAAALSDEDRQKLIDEERATAAELKPFSAEQRRELWASFRSRELPVPDPATDIDFTETVFACPVSF 227          
BLAST of mRNA_Ecto-sp8_S_contig97200.31449.1 vs. uniprot
Match: A0A7Y0E2I1_9PROT (Uncharacterized protein n=1 Tax=Pacificispira spongiicola TaxID=2729598 RepID=A0A7Y0E2I1_9PROT)

HSP 1 Score: 89.0 bits (219), Expect = 3.100e-18
Identity = 49/118 (41.53%), Postives = 68/118 (57.63%), Query Frame = 1
Query:    4 MNDEPIKLRPANENPWYVLATYHGEQK-EGHIDDDLHAKNREVWNRWIATTLSHDDRQKLIDEERATAANMKPFSAEERRELWAGCRSPDLPTPDPATGITFSDTLFARHVSFAPFIF 354
            M D P K  PANENPWY LAT HGEQ  +G  ++ L AKNR VWNRW+A +LS   R  L+ +   ++  + P +  +R  +    R  +L  PDP T I +S+T F  +  F  ++F
Sbjct:    1 MTDAPPKRIPANENPWYRLATVHGEQPVDGVFNNKLAAKNRLVWNRWMAQSLSESSRFYLLQKGSLSSDEVGPLTDSDREAI--STRLMELKAPDPNTEINWSETEFPNNSLFNGYLF 116          
BLAST of mRNA_Ecto-sp8_S_contig97200.31449.1 vs. uniprot
Match: A3X4S5_9RHOB (Uncharacterized protein n=1 Tax=Roseobacter sp. MED193 TaxID=314262 RepID=A3X4S5_9RHOB)

HSP 1 Score: 78.6 bits (192), Expect = 1.270e-14
Identity = 49/132 (37.12%), Postives = 65/132 (49.24%), Query Frame = 1
Query:   22 KLRPANENPWYVLATYHGEQKEGHIDDDLHAKNREVWNRWIATTLSHDDRQKLIDEERATAANMKPFSAEERREL--WAGC--------------RSPDLPT----PDPATGITFSDTLFARHVSFAPFIFP 357
            KL+PANENPWYVL T +GEQ+  +ID +LH  NR+ WN W          QKL DE     AN    +  E REL  W  C              R+P++      P+P   IT  D++F++ V    F+ P
Sbjct:   14 KLKPANENPWYVLMTLYGEQEGRNIDPELHEANRKAWNAWAG--------QKLSDE---ICANSAKKAGIEERELSAWGNCGTQLRLKFCEEYSKRNPNVEKVPGLPEPNMKITCGDSVFSKTVDLRKFVIP 134          
BLAST of mRNA_Ecto-sp8_S_contig97200.31449.1 vs. uniprot
Match: UPI00123737C9 (pentapeptide repeat-containing protein n=1 Tax=Bosea sp. RAC05 TaxID=1842539 RepID=UPI00123737C9)

HSP 1 Score: 78.6 bits (192), Expect = 1.360e-14
Identity = 50/127 (39.37%), Postives = 64/127 (50.39%), Query Frame = 1
Query:   13 EPIK-LRPANENPWYVLATYHGEQKEGH----IDDDLHAKNREVWNRWIATTLS----------HDDR-QKLIDEERATAANMKPFSAEERR--ELWAGCR--SPDLPTPDPATGITFSDTLFARHV 333
            EP + L PAN+NPWYVLAT HGEQ EG      D ++HAKNR  WN+W A  LS          H+D  Q +  E+  T    K   A +RR    W       P +P PDP+  + +S   F R +
Sbjct:   14 EPAQALTPANQNPWYVLATLHGEQPEGATHGAFDKEIHAKNRLTWNKWAAGALSQKQRDILRERHEDSGQPVFSEQELTPYTAKEMVALKRRWRRQWTDRNPSQPVVPLPDPSQFVDYSSVHFDRPI 140          
BLAST of mRNA_Ecto-sp8_S_contig97200.31449.1 vs. uniprot
Match: A0A0P1GQ98_9RHOB (Uncharacterized protein n=1 Tax=Tritonibacter multivorans TaxID=928856 RepID=A0A0P1GQ98_9RHOB)

HSP 1 Score: 75.9 bits (185), Expect = 1.240e-13
Identity = 35/79 (44.30%), Postives = 49/79 (62.03%), Query Frame = 1
Query:   10 DEPIKLRPANENPWYVLATYHGEQKEGHIDDDLHAKNREVWNRWIATTLSHDDRQKLIDEERATAANMKPFSAEERREL 246
            D P +L+PANENPWY+L T +GEQK   ID +LH KNR+ WN W    LS +++ K     +   A ++ +  E R+EL
Sbjct:   13 DTPRELKPANENPWYILMTLYGEQKGHKIDWELHEKNRKAWNAWSGQFLSDEEKAKAAKSSKIDIAELEAWP-ERRKEL 90          
BLAST of mRNA_Ecto-sp8_S_contig97200.31449.1 vs. uniprot
Match: UPI001CD36BC9 (pentapeptide repeat-containing protein n=1 Tax=Cognatishimia sp. MH4019 TaxID=2854030 RepID=UPI001CD36BC9)

HSP 1 Score: 75.1 bits (183), Expect = 2.260e-13
Identity = 46/119 (38.66%), Postives = 63/119 (52.94%), Query Frame = 1
Query:   25 LRPANENPWYVLATYHGEQKEGHIDDDLHAKNREVWNRWIATTLSHDDRQKLIDEERATAANMKPFS--AEERRELWAGC---RSPDLPTPD-PATG--ITFSDTLFARHVSFAPFIFP 357
            L+PANENPWYVL T +GEQK G +D +LH KN+  WN W   TLS ++ ++  +        +  ++    E  +L+      R+PDL  P  P+T   I F    F   V F  FIFP
Sbjct:    4 LKPANENPWYVLMTLYGEQK-GEVDLELHKKNQAAWNAWAGQTLSDEEAKRFAESSNIVDGQLSSWAKRGSEIEKLYERVWKERNPDLAYPGMPSTDDPIDFYKFHFTNPVLFQRFIFP 121          
BLAST of mRNA_Ecto-sp8_S_contig97200.31449.1 vs. uniprot
Match: A0A2T1AK40_9RHOB (Pentapeptide repeat protein n=2 Tax=Tritonibacter scottomollicae TaxID=483013 RepID=A0A2T1AK40_9RHOB)

HSP 1 Score: 74.7 bits (182), Expect = 3.120e-13
Identity = 48/129 (37.21%), Postives = 59/129 (45.74%), Query Frame = 1
Query:    1 RMNDEPIKLRPANENPWYVLATYHGEQKEGHIDDDLHAKNREVWNRWIATTLSHDDRQKLIDEERATAANMKP-----------FSAEERRELWAGCRSPDLPTPDPATGITFSDTLFARHVSFAPFIF 354
            R  + P  LRPA+ENPWY+L T H EQK   ID  LH KNR  WN W   TLS ++R       +   A ++            F+AE RR        PDLP       I  S T FA  +    F+F
Sbjct:    8 RPPETPEGLRPASENPWYILMTLHDEQKGELIDRVLHEKNRRAWNAWSGQTLSAEERAAAAKSSKIDVAELEAWEDLSEEIKARFAAEYRRRNPEVGTVPDLPKATRL--IDMSSTYFANTLVLDGFVF 134          
BLAST of mRNA_Ecto-sp8_S_contig97200.31449.1 vs. uniprot
Match: UPI001D15DB8C (pentapeptide repeat-containing protein n=1 Tax=Methylocystis sp. WRRC1 TaxID=1732014 RepID=UPI001D15DB8C)

HSP 1 Score: 73.2 bits (178), Expect = 1.060e-12
Identity = 47/129 (36.43%), Postives = 67/129 (51.94%), Query Frame = 1
Query:    7 NDEPIKLRPANENPWYVLATYHGEQKEGHIDDD-------LHAKNREVWNRWIATTLSHDDRQKLIDEERATAANMKPFSAEERRELWAGCRS----PDLPTPDPATG-ITFSDTLFARHVSFAPFIFP 357
            +D    L PANENPWY+LAT +GEQ+E  + D        +   NR+ WNRW+AT    ++ + L+        ++KPF++EE  E  A         D+  P+P+   + FS   F R V F  FIFP
Sbjct:    3 DDAKPNLTPANENPWYLLATLYGEQEE--VRDSKWLLLVPIGEANRKAWNRWMATAFQSEELETLLPLAHIKG-DLKPFTSEETDEFRAAFAKRAGRQDIEPPNPSKEFMDFSRCQFDRPVFFRGFIFP 128          
BLAST of mRNA_Ecto-sp8_S_contig97200.31449.1 vs. uniprot
Match: Q1GIY3_RUEST (Uncharacterized protein n=2 Tax=Ruegeria sp. (strain TM1040) TaxID=292414 RepID=Q1GIY3_RUEST)

HSP 1 Score: 72.4 bits (176), Expect = 1.860e-12
Identity = 44/122 (36.07%), Postives = 62/122 (50.82%), Query Frame = 1
Query:   16 PIKLRPANENPWYVLATYHGEQKEGHIDDDLHAKNREVWNRWIATTLSHDDRQKLIDEERATAANMKPFSAEERRELW----------AGCRSPD----LPTPDPATGITFSDTLFARHVSF 339
            P  LRPANENPWY+L T +GEQ+   ID +LH KNR  WN W+   LS ++R        A ++ +K    E   EL           +  R+ D    L  P+PA  I   +T+F+ ++ F
Sbjct:    8 PEGLRPANENPWYILMTLYGEQEGEEIDVELHKKNRRAWNAWVGQALSAEERVAA-----AKSSQIKVTELEAWDELGEKIKARFFEESNRRNVDTEGMLVFPEPAKPIWMGNTVFSENLVF 124          
BLAST of mRNA_Ecto-sp8_S_contig97200.31449.1 vs. uniprot
Match: UPI000483E94F (pentapeptide repeat-containing protein n=1 Tax=Leisingera aquimarina TaxID=476529 RepID=UPI000483E94F)

HSP 1 Score: 68.2 bits (165), Expect = 1.080e-11
Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 1
Query:   22 KLRPANENPWYVLATYHGEQKEGHIDDDLHAKNREVWNRW 141
            +L+PANENPWYVL T +GEQK   ID DLH KNR+VWN W
Sbjct:   16 ELKPANENPWYVLMTLYGEQKGDEIDWDLHEKNRQVWNAW 55          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig97200.31449.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A7X2FWH4_9PROT2.170e-5072.57Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A7Y0E2I1_9PROT3.100e-1841.53Uncharacterized protein n=1 Tax=Pacificispira spon... [more]
A3X4S5_9RHOB1.270e-1437.12Uncharacterized protein n=1 Tax=Roseobacter sp. ME... [more]
UPI00123737C91.360e-1439.37pentapeptide repeat-containing protein n=1 Tax=Bos... [more]
A0A0P1GQ98_9RHOB1.240e-1344.30Uncharacterized protein n=1 Tax=Tritonibacter mult... [more]
UPI001CD36BC92.260e-1338.66pentapeptide repeat-containing protein n=1 Tax=Cog... [more]
A0A2T1AK40_9RHOB3.120e-1337.21Pentapeptide repeat protein n=2 Tax=Tritonibacter ... [more]
UPI001D15DB8C1.060e-1236.43pentapeptide repeat-containing protein n=1 Tax=Met... [more]
Q1GIY3_RUEST1.860e-1236.07Uncharacterized protein n=2 Tax=Ruegeria sp. (stra... [more]
UPI000483E94F1.080e-1170.00pentapeptide repeat-containing protein n=1 Tax=Lei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig97200contigEcto-sp8_S_contig97200:215..571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop0
Start1
Seed ortholog score82.4
Seed ortholog evalue1.5e-13
Seed eggNOG ortholog314262.MED193_20479
Preferred namemfpA
Model size357
KEGG rclassRC00295
KEGG koko:K05851
KEGG ReactionR00089,R00434
KEGG Pathwayko00230,ko02026,ko05111,map00230,map02026,map05111
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Pentapeptide repeats (9 copies)
EggNOG OGs1RCEV@1224,2P455@2433,2U636@28211,COG1357@1,COG1357@2
EC4.6.1.1
Cds size354
COG Functional cat.S
Best tax levelRoseobacter
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145337.5254703-UTR-Ecto-sp8_S_contig97200:214..2171681145337.5254703-UTR-Ecto-sp8_S_contig97200:214..217Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig97200 215..217 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145337.5387852-CDS-Ecto-sp8_S_contig97200:217..5711681145337.5387852-CDS-Ecto-sp8_S_contig97200:217..571Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig97200 218..571 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig97200.31449.1prot_Ecto-sp8_S_contig97200.31449.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig97200 218..571 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig97200.31449.1

>prot_Ecto-sp8_S_contig97200.31449.1 ID=prot_Ecto-sp8_S_contig97200.31449.1|Name=mRNA_Ecto-sp8_S_contig97200.31449.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=118bp
MNDEPIKLRPANENPWYVLATYHGEQKEGHIDDDLHAKNREVWNRWIATT
LSHDDRQKLIDEERATAANMKPFSAEERRELWAGCRSPDLPTPDPATGIT
FSDTLFARHVSFAPFIFP
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mRNA from alignment at Ecto-sp8_S_contig97200:215..571+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig97200.31449.1 ID=mRNA_Ecto-sp8_S_contig97200.31449.1|Name=mRNA_Ecto-sp8_S_contig97200.31449.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=357bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97200:215..571+ (Ectocarpus species8 EcLAC_412)
CGCATGAACGACGAGCCAATCAAATTGCGCCCCGCCAACGAAAACCCCTG GTACGTACTGGCGACGTATCATGGAGAACAGAAGGAGGGGCATATTGACG ACGATCTTCACGCAAAAAACAGGGAAGTCTGGAATCGATGGATAGCTACG ACCCTGTCACATGATGACCGTCAAAAACTGATCGATGAAGAACGTGCCAC TGCAGCTAATATGAAACCCTTCAGCGCAGAAGAACGCCGGGAACTCTGGG CTGGCTGTAGGTCTCCAGATTTGCCCACCCCCGACCCTGCCACCGGTATC ACTTTCAGTGATACACTGTTCGCCCGGCACGTTTCATTTGCTCCATTCAT TTTCCCT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig97200:215..571+

>mRNA_Ecto-sp8_S_contig97200.31449.1 ID=mRNA_Ecto-sp8_S_contig97200.31449.1|Name=mRNA_Ecto-sp8_S_contig97200.31449.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=354bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97200:215..571+ (Ectocarpus species8 EcLAC_412)
ATGAACGACGAGCCAATCAAATTGCGCCCCGCCAACGAAAACCCCTGGTA
CGTACTGGCGACGTATCATGGAGAACAGAAGGAGGGGCATATTGACGACG
ATCTTCACGCAAAAAACAGGGAAGTCTGGAATCGATGGATAGCTACGACC
CTGTCACATGATGACCGTCAAAAACTGATCGATGAAGAACGTGCCACTGC
AGCTAATATGAAACCCTTCAGCGCAGAAGAACGCCGGGAACTCTGGGCTG
GCTGTAGGTCTCCAGATTTGCCCACCCCCGACCCTGCCACCGGTATCACT
TTCAGTGATACACTGTTCGCCCGGCACGTTTCATTTGCTCCATTCATTTT
CCCT
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