mRNA_Ecto-sp8_S_contig97026.31418.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig97026.31418.1
Unique NamemRNA_Ecto-sp8_S_contig97026.31418.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig97026.31418.1 vs. uniprot
Match: A0A164MQB8_9AGAM (TPR-like protein n=2 Tax=Sistotremastrum TaxID=139133 RepID=A0A164MQB8_9AGAM)

HSP 1 Score: 72.4 bits (176), Expect = 1.470e-12
Identity = 40/76 (52.63%), Postives = 50/76 (65.79%), Query Frame = 1
Query:   19 NLAYAQIKLGSMKDAEEACSRALHIQPSCAKALFRRGQARLALGRALDAATDFRAVIVLEPGNVEATKMLHRAQQK 246
            N A A +KLG  +DAE  C+  L + P+  KALFRRGQAR ALGR  DA  DFR ++ LEP N  A + L +A+QK
Sbjct:   46 NRAAAYLKLGKNEDAERDCTTCLGLSPTNVKALFRRGQARAALGRTEDAILDFREILKLEPKNEPAKEELAKAEQK 121          
BLAST of mRNA_Ecto-sp8_S_contig97026.31418.1 vs. uniprot
Match: A0A0W0FC10_9AGAR (RPAP3_C domain-containing protein n=2 Tax=Moniliophthora roreri TaxID=221103 RepID=A0A0W0FC10_9AGAR)

HSP 1 Score: 63.5 bits (153), Expect = 2.070e-9
Identity = 39/86 (45.35%), Postives = 49/86 (56.98%), Query Frame = 1
Query:   19 NLAYAQIKLGSMKDAEEACSRALHIQPSCAKALFRRGQARLALGRALDAATDFRAVIVLEPGNVEATKMLHRAQ---QKEESITNA 267
            N A A +KLG  +DAE  C+  L + PS  KA+FRRGQARL +G+  +A  DF A   +EPGN      L   Q   QK+ S T A
Sbjct:   46 NRAAAYLKLGKNEDAERDCTTVLTLSPSNVKAIFRRGQARLGMGKLDEAKADFEAAAKIEPGNQAVKDELGNIQVLTQKKASKTTA 131          
BLAST of mRNA_Ecto-sp8_S_contig97026.31418.1 vs. uniprot
Match: E2LL38_MONPE (Uncharacterized protein (Fragment) n=1 Tax=Moniliophthora perniciosa (strain FA553 / isolate CP02) TaxID=554373 RepID=E2LL38_MONPE)

HSP 1 Score: 62.8 bits (151), Expect = 3.020e-9
Identity = 37/86 (43.02%), Postives = 50/86 (58.14%), Query Frame = 1
Query:   19 NLAYAQIKLGSMKDAEEACSRALHIQPSCAKALFRRGQARLALGRALDAATDFRAVIVLEPGNVEATKMLHRAQ---QKEESITNA 267
            N A A +K+G  +DAE  C+  L + PS  KA+FRRGQARL +G+  +A  DF A   +EPGN      L + +   QK+ S T A
Sbjct:   49 NRAAAYLKIGKNEDAERDCTTVLTLSPSNVKAIFRRGQARLGMGKLDEAKADFEAAAKIEPGNQAVKDELEKIRVLAQKKASKTTA 134          
BLAST of mRNA_Ecto-sp8_S_contig97026.31418.1 vs. uniprot
Match: A0A166PNE9_9AGAM (RPAP3_C domain-containing protein n=2 Tax=Fibularhizoctonia sp. CBS 109695 TaxID=436010 RepID=A0A166PNE9_9AGAM)

HSP 1 Score: 62.0 bits (149), Expect = 7.730e-9
Identity = 37/97 (38.14%), Postives = 53/97 (54.64%), Query Frame = 1
Query:   19 NLAYAQIKLGSMKDAEEACSRALHIQPSCAKALFRRGQARLALGRALDAATDFRAVIVLEPGNVEATKMLHRAQQKEESITNASGRPPAEEVIPPAS 309
            N A A +KLG  +DAE  C+  L +  +  K LFRR QAR+A+G+ LDA  D +  + +E GN    K L      E  ++ A G+ PA  V+ P +
Sbjct:   45 NRAAAYLKLGKNEDAERDCTTVLALSQTNVKGLFRRAQARIAMGKLLDAQDDLKQALKIESGNEAVKKELTNV---EGMLSKAKGKKPARTVLDPTA 138          
BLAST of mRNA_Ecto-sp8_S_contig97026.31418.1 vs. uniprot
Match: A0A2P8ZDT7_BLAGE (Peptidylprolyl isomerase n=1 Tax=Blattella germanica TaxID=6973 RepID=A0A2P8ZDT7_BLAGE)

HSP 1 Score: 61.6 bits (148), Expect = 1.100e-8
Identity = 33/76 (43.42%), Postives = 42/76 (55.26%), Query Frame = 1
Query:   19 NLAYAQIKLGSMKDAEEACSRALHIQPSCAKALFRRGQARLALGRALDAATDFRAVIVLEPGNVEATKMLHRAQQK 246
            NLA   ++L    DA + C++AL + PS  K LFRRGQA L LG    A  DF A++ LEP N  A   +    QK
Sbjct:  369 NLALCHLRLQEHVDARDQCNKALELNPSSEKGLFRRGQANLGLGEPERAKVDFEAILKLEPSNTAAANQILVCNQK 444          
BLAST of mRNA_Ecto-sp8_S_contig97026.31418.1 vs. uniprot
Match: A0A8H5B3H2_9AGAR (RPAP3_C domain-containing protein n=1 Tax=Psilocybe cf. subviscida TaxID=2480587 RepID=A0A8H5B3H2_9AGAR)

HSP 1 Score: 60.5 bits (145), Expect = 2.680e-8
Identity = 32/72 (44.44%), Postives = 43/72 (59.72%), Query Frame = 1
Query:   19 NLAYAQIKLGSMKDAEEACSRALHIQPSCAKALFRRGQARLALGRALDAATDFRAVIVLEPGNVEATKMLHR 234
            N A A +KLG  +DAE  C+  L + P   KALFRRGQAR+A+ + L+A  DF  ++V EP N      L +
Sbjct:   45 NRAAAYLKLGKAEDAERDCNIVLRLNPKNVKALFRRGQARVAMNKLLEAHKDFSDILVAEPSNAAVQDELKK 116          
BLAST of mRNA_Ecto-sp8_S_contig97026.31418.1 vs. uniprot
Match: UPI001F5F87D9 (peptidyl-prolyl cis-trans isomerase FKBP4-like isoform X2 n=2 Tax=Schistocerca TaxID=7008 RepID=UPI001F5F87D9)

HSP 1 Score: 60.1 bits (144), Expect = 3.700e-8
Identity = 34/70 (48.57%), Postives = 42/70 (60.00%), Query Frame = 1
Query:   19 NLAYAQIKLGSMKDAEEACSRALHIQPSCAKALFRRGQARLALGRALDAATDFRAVIVLEPGNVEATKML 228
            NLA   +KL    +A E C++AL +QPS  K LFRRGQA L +G    A TDF AV+ LEP N  A   +
Sbjct:  322 NLAMCYLKLEEHFEAREQCNKALEVQPSSEKGLFRRGQAYLGMGEPELAKTDFEAVLKLEPENKAAANNI 391          
BLAST of mRNA_Ecto-sp8_S_contig97026.31418.1 vs. uniprot
Match: UPI001F500BD7 (peptidyl-prolyl cis-trans isomerase FKBP4-like isoform X1 n=4 Tax=Schistocerca TaxID=7008 RepID=UPI001F500BD7)

HSP 1 Score: 60.1 bits (144), Expect = 3.750e-8
Identity = 34/70 (48.57%), Postives = 42/70 (60.00%), Query Frame = 1
Query:   19 NLAYAQIKLGSMKDAEEACSRALHIQPSCAKALFRRGQARLALGRALDAATDFRAVIVLEPGNVEATKML 228
            NLA   +KL    +A E C++AL +QPS  K LFRRGQA L +G    A TDF AV+ LEP N  A   +
Sbjct:  322 NLAMCYLKLEEHFEAREQCNKALEVQPSSEKGLFRRGQAYLGMGEPELAKTDFEAVLKLEPENKAAANNI 391          
BLAST of mRNA_Ecto-sp8_S_contig97026.31418.1 vs. uniprot
Match: A0A7S3WEE5_EMIHU (Peptidylprolyl isomerase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WEE5_EMIHU)

HSP 1 Score: 60.1 bits (144), Expect = 3.820e-8
Identity = 36/76 (47.37%), Postives = 43/76 (56.58%), Query Frame = 1
Query:    1 ELACLCNLAYAQIKLGSMKDAEEACSRALHIQPSCAKALFRRGQARLALGRALDAATDFRAVIVLEPGNVEATKML 228
             LACL N+A  Q++LG    A ++CS AL I P  AKALFRRGQARLAL     A  D  A    +P + E    L
Sbjct:  515 RLACLVNMAACQLRLGEHGAAAKSCSAALDIAPGSAKALFRRGQARLALAELSGAKEDLLAAAKADPKSREVRAAL 590          
BLAST of mRNA_Ecto-sp8_S_contig97026.31418.1 vs. uniprot
Match: UPI001C7B83AA (uncharacterized protein n=1 Tax=Guyanagaster necrorhizus MCA 3950 TaxID=1450536 RepID=UPI001C7B83AA)

HSP 1 Score: 59.7 bits (143), Expect = 4.800e-8
Identity = 37/88 (42.05%), Postives = 50/88 (56.82%), Query Frame = 1
Query:   19 NLAYAQIKLGSMKDAEEACSRALHIQPSCAKALFRRGQARLALGRALDAATDFRAVIVLEPGNVEATKMLHRAQQK-EESITNASGRP 279
            N A A +KLG   DAE  C+  L +  S AKALFRR QAR+ +G+  +A  D RA   LEP NV  T+ + +     + SIT +  +P
Sbjct:   45 NRAAAYLKLGKYDDAERDCTTVLSLNISNAKALFRRSQARVGMGKLKEAEGDLRAAAKLEPSNVSITQEITKVTDAIKRSITISKTKP 132          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig97026.31418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A164MQB8_9AGAM1.470e-1252.63TPR-like protein n=2 Tax=Sistotremastrum TaxID=139... [more]
A0A0W0FC10_9AGAR2.070e-945.35RPAP3_C domain-containing protein n=2 Tax=Moniliop... [more]
E2LL38_MONPE3.020e-943.02Uncharacterized protein (Fragment) n=1 Tax=Monilio... [more]
A0A166PNE9_9AGAM7.730e-938.14RPAP3_C domain-containing protein n=2 Tax=Fibularh... [more]
A0A2P8ZDT7_BLAGE1.100e-843.42Peptidylprolyl isomerase n=1 Tax=Blattella germani... [more]
A0A8H5B3H2_9AGAR2.680e-844.44RPAP3_C domain-containing protein n=1 Tax=Psilocyb... [more]
UPI001F5F87D93.700e-848.57peptidyl-prolyl cis-trans isomerase FKBP4-like iso... [more]
UPI001F500BD73.750e-848.57peptidyl-prolyl cis-trans isomerase FKBP4-like iso... [more]
A0A7S3WEE5_EMIHU3.820e-847.37Peptidylprolyl isomerase n=1 Tax=Emiliania huxleyi... [more]
UPI001C7B83AA4.800e-842.05uncharacterized protein n=1 Tax=Guyanagaster necro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig97026contigEcto-sp8_S_contig97026:73..420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeFungi
Stop0
Start0
Seed ortholog score66.2
Seed ortholog evalue1.1e-08
Seed eggNOG ortholog221103.XP_007853225.1
Model size348
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Rna polymerase ii-associated protein 3
EggNOG OGs22912@155619,38GIQ@33154,3P536@4751,3V24M@5204,3W4HN@5338,COG0457@1,KOG4648@2759
Cds size348
COG Functional cat.S
Best tax levelAgaricales
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145335.3609614-CDS-Ecto-sp8_S_contig97026:72..4201681145335.3609614-CDS-Ecto-sp8_S_contig97026:72..420Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig97026 73..420 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig97026.31418.1prot_Ecto-sp8_S_contig97026.31418.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig97026 73..420 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig97026.31418.1

>prot_Ecto-sp8_S_contig97026.31418.1 ID=prot_Ecto-sp8_S_contig97026.31418.1|Name=mRNA_Ecto-sp8_S_contig97026.31418.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=116bp
ELACLCNLAYAQIKLGSMKDAEEACSRALHIQPSCAKALFRRGQARLALG
RALDAATDFRAVIVLEPGNVEATKMLHRAQQKEESITNASGRPPAEEVIP
PASRVQVPAEEVYQQP
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mRNA from alignment at Ecto-sp8_S_contig97026:73..420+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig97026.31418.1 ID=mRNA_Ecto-sp8_S_contig97026.31418.1|Name=mRNA_Ecto-sp8_S_contig97026.31418.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=348bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97026:73..420+ (Ectocarpus species8 EcLAC_412)
GAACTAGCTTGCCTTTGCAACCTTGCTTACGCTCAAATCAAGCTAGGCTC GATGAAAGACGCAGAAGAAGCTTGTTCTCGAGCACTCCACATCCAACCTT CCTGCGCCAAGGCGCTCTTTCGCCGCGGGCAGGCTCGGCTAGCCTTGGGC AGGGCGCTAGACGCCGCAACCGATTTCCGAGCGGTGATTGTCCTCGAACC TGGCAACGTCGAAGCCACCAAAATGCTTCATCGCGCGCAGCAGAAGGAAG AGAGTATTACGAACGCCAGCGGACGGCCCCCTGCGGAAGAGGTGATACCG CCAGCCTCTCGTGTACAGGTCCCGGCGGAGGAGGTTTACCAGCAACCA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig97026:73..420+

>mRNA_Ecto-sp8_S_contig97026.31418.1 ID=mRNA_Ecto-sp8_S_contig97026.31418.1|Name=mRNA_Ecto-sp8_S_contig97026.31418.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97026:73..420+ (Ectocarpus species8 EcLAC_412)
GAACTAGCTTGCCTTTGCAACCTTGCTTACGCTCAAATCAAGCTAGGCTC
GATGAAAGACGCAGAAGAAGCTTGTTCTCGAGCACTCCACATCCAACCTT
CCTGCGCCAAGGCGCTCTTTCGCCGCGGGCAGGCTCGGCTAGCCTTGGGC
AGGGCGCTAGACGCCGCAACCGATTTCCGAGCGGTGATTGTCCTCGAACC
TGGCAACGTCGAAGCCACCAAAATGCTTCATCGCGCGCAGCAGAAGGAAG
AGAGTATTACGAACGCCAGCGGACGGCCCCCTGCGGAAGAGGTGATACCG
CCAGCCTCTCGTGTACAGGTCCCGGCGGAGGAGGTTTACCAGCAACCA
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