mRNA_Ecto-sp8_S_contig97018.31416.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig97018.31416.1
Unique NamemRNA_Ecto-sp8_S_contig97018.31416.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig97018.31416.1 vs. uniprot
Match: D7FPW0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPW0_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 1.310e-32
Identity = 79/90 (87.78%), Postives = 80/90 (88.89%), Query Frame = 1 
Query:    1 MGAGLAAQRGWPQGQENDPPSPQRTGTSXXXXXXXXXXXXXXXXXXXLL-FEETADRSEVQPLEDSDFAHNYGSSASLASLVPLDRKRWS 267
            MGAGLAAQRGWPQGQE+DP SPQRTGT XXXXXXXXXXXXXX     LL FEETAD SEVQPLEDSDFA NYGSSASLASLVPLDRKRWS
Sbjct:    1 MGAGLAAQRGWPQGQEDDPSSPQRTGTXXXXXXXXXXXXXXXSRRSSLLLFEETADTSEVQPLEDSDFARNYGSSASLASLVPLDRKRWS 90
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig97018.31416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FPW0_ECTSI1.310e-3287.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig97018contigEcto-sp8_S_contig97018:3..269 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size267
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_008500.1
Cds size267
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145335.1484246-CDS-Ecto-sp8_S_contig97018:2..2691681145335.1484246-CDS-Ecto-sp8_S_contig97018:2..269Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig97018 3..269 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig97018.31416.1prot_Ecto-sp8_S_contig97018.31416.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig97018 3..269 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig97018.31416.1

>prot_Ecto-sp8_S_contig97018.31416.1 ID=prot_Ecto-sp8_S_contig97018.31416.1|Name=mRNA_Ecto-sp8_S_contig97018.31416.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=89bp
MGAGLAAQRGWPQGQENDPPSPQRTGTSSSSGEEPPPSSHLHRRSSLLLF
EETADRSEVQPLEDSDFAHNYGSSASLASLVPLDRKRWS
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mRNA from alignment at Ecto-sp8_S_contig97018:3..269-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig97018.31416.1 ID=mRNA_Ecto-sp8_S_contig97018.31416.1|Name=mRNA_Ecto-sp8_S_contig97018.31416.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=267bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97018:3..269- (Ectocarpus species8 EcLAC_412)
ATGGGAGCAGGGTTAGCCGCACAGCGCGGCTGGCCTCAGGGCCAAGAGAA
CGACCCCCCATCGCCGCAGCGCACGGGAACCTCGTCGTCGTCGGGAGAAG
AGCCCCCACCAAGCAGCCATCTGCACAGAAGGAGCTCCTTGCTGTTGTTC
GAGGAAACCGCGGACAGGAGCGAGGTGCAACCGCTAGAGGACAGCGACTT
CGCGCACAACTACGGCTCTTCTGCAAGCCTGGCAAGCCTCGTGCCCCTCG
ACAGGAAGCGGTGGTCT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig97018:3..269-

>mRNA_Ecto-sp8_S_contig97018.31416.1 ID=mRNA_Ecto-sp8_S_contig97018.31416.1|Name=mRNA_Ecto-sp8_S_contig97018.31416.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97018:3..269- (Ectocarpus species8 EcLAC_412)
ATGGGAGCAGGGTTAGCCGCACAGCGCGGCTGGCCTCAGGGCCAAGAGAA
CGACCCCCCATCGCCGCAGCGCACGGGAACCTCGTCGTCGTCGGGAGAAG
AGCCCCCACCAAGCAGCCATCTGCACAGAAGGAGCTCCTTGCTGTTGTTC
GAGGAAACCGCGGACAGGAGCGAGGTGCAACCGCTAGAGGACAGCGACTT
CGCGCACAACTACGGCTCTTCTGCAAGCCTGGCAAGCCTCGTGCCCCTCG
ACAGGAAGCGGTGGTCT
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