mRNA_Ecto-sp8_S_contig9695.31405.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9695.31405.1
Unique NamemRNA_Ecto-sp8_S_contig9695.31405.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9695.31405.1 vs. uniprot
Match: A0A6H5L324_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L324_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 2.120e-13
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:  256 AIFCSSVPQATFKNANFTRNSALWGGAVALFSSGGSAS 369
            AIFCSSVPQATFKNANFTRNSALWGGAVALFSSGGSAS
Sbjct:  297 AIFCSSVPQATFKNANFTRNSALWGGAVALFSSGGSAS 334
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BLAST of mRNA_Ecto-sp8_S_contig9695.31405.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 2.120e-13
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:  256 AIFCSSVPQATFKNANFTRNSALWGGAVALFSSGGSAS 369
            AIFCSSVPQATFKNANFTRNSALWGGAVALFSSGGSAS
Sbjct:  321 AIFCSSVPQATFKNANFTRNSALWGGAVALFSSGGSAS 358
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BLAST of mRNA_Ecto-sp8_S_contig9695.31405.1 vs. uniprot
Match: A0A6H5L874_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L874_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 5.830e-7
Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:  256 AIFCSSVPQATFKNANFTRNSALWGGAVALFSSG 357
            AI+ S+VPQATFKNANFT N+A+WGGAVA FSSG
Sbjct:  187 AIYSSNVPQATFKNANFTSNAAVWGGAVASFSSG 220
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BLAST of mRNA_Ecto-sp8_S_contig9695.31405.1 vs. uniprot
Match: D7FTU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU5_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 6.480e-5
Identity = 24/32 (75.00%), Postives = 28/32 (87.50%), Query Frame = 1 
Query:  256 AIFCSSVPQATFKNANFTRNSALWGGAVALFS 351
            AI+ S+VPQATFKNANF  N+A+WGGAVA FS
Sbjct:  331 AIYSSNVPQATFKNANFDGNAAVWGGAVASFS 362
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9695.31405.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L324_9PHAE2.120e-13100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTT9_ECTSI2.120e-13100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L874_9PHAE5.830e-779.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTU5_ECTSI6.480e-575.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9695contigEcto-sp8_S_contig9695:272..2348 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score75.1
Seed ortholog evalue2.6e-11
Seed eggNOG ortholog2880.D7FTT9
Model size370
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs2BFIX@1,2S176@2759
Cds size369
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145334.2362015-CDS-Ecto-sp8_S_contig9695:271..3581681145334.2362015-CDS-Ecto-sp8_S_contig9695:271..358Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9695 272..358 -
1681145334.2499156-CDS-Ecto-sp8_S_contig9695:1261..13771681145334.2499156-CDS-Ecto-sp8_S_contig9695:1261..1377Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9695 1262..1377 -
1681145334.268856-CDS-Ecto-sp8_S_contig9695:1719..18031681145334.268856-CDS-Ecto-sp8_S_contig9695:1719..1803Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9695 1720..1803 -
1681145334.2845483-CDS-Ecto-sp8_S_contig9695:2266..23481681145334.2845483-CDS-Ecto-sp8_S_contig9695:2266..2348Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9695 2267..2348 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9695.31405.1prot_Ecto-sp8_S_contig9695.31405.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9695 272..2348 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9695.31405.1

>prot_Ecto-sp8_S_contig9695.31405.1 ID=prot_Ecto-sp8_S_contig9695.31405.1|Name=mRNA_Ecto-sp8_S_contig9695.31405.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=123bp
GAINAYDDVIITTVGETSFVGNTAEEGGAVYADTGVTVALSGTQLYENNS
ASSNGGAIRLSFAASVSITGQPVFHDNSAPDGSGGAIFCSSVPQATFKNA
NFTRNSALWGGAVALFSSGGSAS
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mRNA from alignment at Ecto-sp8_S_contig9695:272..2348-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9695.31405.1 ID=mRNA_Ecto-sp8_S_contig9695.31405.1|Name=mRNA_Ecto-sp8_S_contig9695.31405.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2077bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9695:272..2348- (Ectocarpus species8 EcLAC_412)
GGGGCGATTAATGCGTACGATGACGTCATCATCACGACGGTGGGCGAAAC
TTCGTTCGTCGGCAATACGGCGGAAGAAGGAGGTGACGAAACTGAAAGAC
GTCATCGAAGATGCTCCGTTCGAAATTCGCGCCTACCACCGTCCTGCGGA
CATGGCGACCCAAACGTTGCTATGATTGAAACCGTGTGCAAGCATGCTTC
GGTGCATGGAAGCCGCGTGTGTCCCACTGCAGGGGCACCGTGAAATGCAT
TGCCCGTCCGATGCGCCCCTGGCCCCGTGTGACTGGCGTGATGATGCAGA
CGAGGGGCTTAGACAACAACACCCAACAGTATGCAAAGTAGCAGCAGCAG
CAAAAGCAACATGAACAACGTAATTTTCCTGACAACGGTAGCATCGACGC
CATCGAGTAACTCGTCGCTTAGTGTTCACCATGTCCTTGGCACGCGACCA
CCTTCCCTTCACGCATCTTACTTGTGTGTGGTCTCACGTCGTGCACCCTT
TTTTTTTCTGCTTTCCGACGTTCGCCTTGTTTCTTCGCCGAACAGGTGCA
GTGTACGCTGACACCGGCGTCACCGTCGCCCTGTCCGGCACCCAGCTCTA
CGAAAATAACTCGGCCTCGAGCAACGGAGGTATGCCAGCGTTTCATGCCT
TTTGTTGCGCAGCCTGCTGTTGTCGTGATGGCAGTTCATGGTGGTGGTGT
TGTTGATGGATGGGAGTCGTACCGTCGTTGACGTAAACCTATGCGAAATC
CACTGACAAGTGGGGCAAGAAAAACGGTTTGCACCTTCCCCGCCTTCTGC
GAGCAGAACCGCACCACAACACACCCGGTGCCACCCCGACCCTCATCGCC
GGACTTCGCGCTCCCAACACCCCGCCGGCGCCTAACAAGACTAAAATAGG
GCATGCATAAACACGAGTGAGTACCCCCCCCCTCGCCTACGCGCCGGCGC
CCCCTCCTGTCTTGACATCAGGTGCAATCCGCCTCTCATTCGCGGCATCG
GTAAGTATCACCGGCCAACCGGTCTTCCACGACAACTCTGCCCCTGACGG
GTCTGGGGGCGCTATTTTCTGTTCCAGCGTTCCTCAGGTGCGGCGACCGC
ATGTTTCGCAGAGACTGGTGTTTGTGAGCGGTCGTGTTTTTCATGTTAGC
ATCGACCGCGCTAACCGGCTAACCAATGGAAACACTTCAGTCTCAGTGCG
GTTGAAATCACAACTGCTTCTAAACGCGACGATCTGGGGGTATTGTATGT
GTGTATGTTCTTCATATTATTCGCAGCGACTGCGCTAACCGGCTGCCCAA
TGAAAAGACACCCGTCTTGTAGCGGGATAAAAAAAACGCAGACGTTTCCT
GATCAAAGGGTAAGGGTTCTGCCGATAGGGGGGGCGCGAAGGAGTCGGAC
GACGGAGTCAGGCTTCGGGAGTACAAGGAGAAGATTCAAACCTATCAGGC
AACACATACTTTGTGTGCATGGTGTGTGTGTTTTTAGATGGCATCGACCG
AGCTAACCGGCTAACCAACGTGATTTTGCGTAGTGCTTACATGAGAACAG
CTTGCATCGGATGGCAATCACGGGCGAGTGCGACGAAGCTCCGTAATTTC
ATTCCAATACGGTTGCCCCCCAAGCTCTTATGGAACCTGAGCCCCTACGC
GCACATCCCTCGCCTCCGATACGATACACAACGGTGTGAGTGAATGCCAT
CCTACAGCACAACCTCCACAACCTACGACATCTCTGCGCACAACACTTGC
GTACGATACAAAATGGTGCAAATCCATCCTACAGCACAGCATCTGTTTTC
ACTGTTCGCGCGTGTGTACAGCTGGCTGCGTTCGGACGCGTCGTGATTTT
TCAAATTTGGACCAGATCTTCTTGGCGACGTCGCTTCGCACTCTTGCTTG
CTTCGTCCCGCCCGACGGCCTAATCCCTTTGTTTAAAACGCTCCGATTCC
CGCTCGACCCCTGTTGTTGAAACCGAAACCGTCCCAACAGGCGACCTTCA
AGAACGCCAACTTTACGCGCAACTCCGCCCTCTGGGGCGGCGCCGTGGCG
CTGTTCTCCTCCGGCGGTTCGGCCTCC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9695:272..2348-

>mRNA_Ecto-sp8_S_contig9695.31405.1 ID=mRNA_Ecto-sp8_S_contig9695.31405.1|Name=mRNA_Ecto-sp8_S_contig9695.31405.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=369bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9695:272..2348- (Ectocarpus species8 EcLAC_412)
GGGGCGATTAATGCGTACGATGACGTCATCATCACGACGGTGGGCGAAAC
TTCGTTCGTCGGCAATACGGCGGAAGAAGGAGGTGCAGTGTACGCTGACA
CCGGCGTCACCGTCGCCCTGTCCGGCACCCAGCTCTACGAAAATAACTCG
GCCTCGAGCAACGGAGGTGCAATCCGCCTCTCATTCGCGGCATCGGTAAG
TATCACCGGCCAACCGGTCTTCCACGACAACTCTGCCCCTGACGGGTCTG
GGGGCGCTATTTTCTGTTCCAGCGTTCCTCAGGCGACCTTCAAGAACGCC
AACTTTACGCGCAACTCCGCCCTCTGGGGCGGCGCCGTGGCGCTGTTCTC
CTCCGGCGGTTCGGCCTCC
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