mRNA_Ecto-sp8_S_contig9693.31403.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9693.31403.1
Unique NamemRNA_Ecto-sp8_S_contig9693.31403.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9693.31403.1 vs. uniprot
Match: D8LNW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNW7_ECTSI)

HSP 1 Score: 366 bits (939), Expect = 7.590e-127
Identity = 179/209 (85.65%), Postives = 185/209 (88.52%), Query Frame = 1 
Query:    1 MSMVYRQVEQAEPVDEARFNGEGGVRRQWWWQPGPVDSCCFCCSLRAGVGILAAKDLFYNGIWAAFYSRSDVEKMLRTAIAILQSAYDKDCKDAPVQTVDCLQLSHNIEQAEFQVELLDNLPVIVYVEAVIAMLAGAVGLFAVFKSNALSAKIYLWTWLPKFFVGLVGNYTVRAEMKQYGIDNGDGPGVVTGELVGVVFLLYFVKVGRS 627
            MSMVYRQVEQ EPVD ARFNGEGGVRRQWWWQPGPVDSCCFCCSLRAGVGILAA DLF NGIW+ FYSRS +EKML  AI ILQS YDKDCKDAPVQT DCLQLSHNIEQAEF+VEL DNLPVIVYVEA+IAMLAGAVGLFAVFKSNALSAKIYLW WLP+FFVGLV  YT+RA MKQYGIDN DGPGVV G LV VV  LYFVKV  S
Sbjct:    1 MSMVYRQVEQEEPVDGARFNGEGGVRRQWWWQPGPVDSCCFCCSLRAGVGILAANDLFLNGIWSTFYSRSHIEKMLHAAIEILQSVYDKDCKDAPVQTEDCLQLSHNIEQAEFEVELFDNLPVIVYVEAIIAMLAGAVGLFAVFKSNALSAKIYLWMWLPRFFVGLVAKYTLRAVMKQYGIDNSDGPGVVIGHLVDVVVFLYFVKVAWS 209
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BLAST of mRNA_Ecto-sp8_S_contig9693.31403.1 vs. uniprot
Match: A0A6H5JV23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV23_9PHAE)

HSP 1 Score: 274 bits (700), Expect = 7.800e-91
Identity = 136/172 (79.07%), Postives = 149/172 (86.63%), Query Frame = 1 
Query:  112 SCCFCCSLRAGVGILAAKDLFYNGIWAAFYSRSDVEKMLRTAIAILQSAYDKDCKDAPVQTVDCLQLSHNIEQAEFQVELLDNLPVIVYVEAVIAMLAGAVGLFAVFKSNALSAKIYLWTWLPKFFVGLVGNYTVRAEMKQYGIDNGDGPGVVTGELVGVVFLLYFVKVGRS 627
            +CCFCCSLRAGVGILAA DL + GIW AFY+R  VEKML+TAIAI+QS YD DCKDAPVQT DCL+ SH IEQ EFQVEL +NLPVIVYVEAVIAM+AGAVGLFAVFKSNALSAKIYLWTWLP+FFVGLV  YT+RAEMKQYGIDN + PGVV  ELV  +FLLY+VKV  S
Sbjct:   13 TCCFCCSLRAGVGILAANDLLHTGIWTAFYARGYVEKMLQTAIAIVQSLYDMDCKDAPVQTEDCLKRSHEIEQMEFQVELFENLPVIVYVEAVIAMIAGAVGLFAVFKSNALSAKIYLWTWLPRFFVGLVARYTMRAEMKQYGIDNNNEPGVVINELVTAIFLLYYVKVTWS 184
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BLAST of mRNA_Ecto-sp8_S_contig9693.31403.1 vs. uniprot
Match: D8LNW6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNW6_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 2.360e-26
Identity = 73/197 (37.06%), Postives = 104/197 (52.79%), Query Frame = 1 
Query:   43 DEARFNGEGGVRRQWWWQPGPVDSCCFCCSLRAGVGILAAKDLFYNGIWAAFY-SRSDVEKMLRTAIAILQSAYDKDCKDAPVQTVDCLQLSHNIEQAEFQVELLDNLPVIVYVEAVIAMLAGAVGLFAVFKSNALSAKIYLWTWLPKFFVGLVGNYTVRAEMKQYGIDNGDGPG-VVTGELVGVVFLLYFVKVGRS 627
            +  RFNG GGVR+ WWWQPGPVDS     SL AGV +LAA D+   G    +Y S    +  L+  +A  +  Y ++C+D    + DCL  +  I      +   ++L V   ++ VIA + G VGL AVF  +AL+A+ YLW+W P+  + LV     R   ++Y  D G   G  V   +  V+ L Y +KV  S
Sbjct:   26 ERVRFNGVGGVRKDWWWQPGPVDSXXXXFSLAAGVAVLAALDIIVLGAMRLYYVSFVTGDAGLKQLLAGFEKKYAEECEDVAEASADCLAQASII----LSLNKTNDLYVPAVLQGVIAAIFGFVGLRAVFAHDALAARAYLWSWPPRIVLTLVELVMQRIRFERY--DMGFLWGFTVVWNIPRVLILAYCLKVAWS 216
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BLAST of mRNA_Ecto-sp8_S_contig9693.31403.1 vs. uniprot
Match: D8LKG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKG8_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 3.880e-7
Identity = 38/133 (28.57%), Postives = 63/133 (47.37%), Query Frame = 1 
Query:   70 GVRRQWWWQPGPVDSCCFCCSLRAGVGILAAKDLFYNGIWAAFYSRSDVEKMLRTAIAILQSAYDKDCKDAPVQTVDCLQLSHNIEQAEFQVELLDNLPVIVYVEAVIAMLAGAVGLFAVFKSNALSAKIYLW 468
            G R++WWWQPGPVD+  FC  L  GVG+ A  +L Y  +  A              +   +  + +DC+        C +L  +I     ++ L ++  V   + A + ++ G +GL A +  +A +AK  LW
Sbjct:   40 GRRKEWWWQPGPVDTVGFCWDLDMGVGLNAVGELVYGILAFASIGHRLAADTSTVVVQEKEEEFARDCEGLEQMPYKCERLIGSI----LELTLANDTLVPNVLAAAVLLMLGWLGLRAWWCFDARAAKFNLW 168
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9693.31403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LNW7_ECTSI7.590e-12785.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JV23_9PHAE7.800e-9179.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNW6_ECTSI2.360e-2637.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LKG8_ECTSI3.880e-728.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9693contigEcto-sp8_S_contig9693:1174..5577 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size627
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-08_005550.1
Cds size627
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145334.10676-CDS-Ecto-sp8_S_contig9693:1173..12861681145334.10676-CDS-Ecto-sp8_S_contig9693:1173..1286Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9693 1174..1286 +
1681145334.120369-CDS-Ecto-sp8_S_contig9693:3808..38371681145334.120369-CDS-Ecto-sp8_S_contig9693:3808..3837Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9693 3809..3837 +
1681145334.132669-CDS-Ecto-sp8_S_contig9693:4199..43151681145334.132669-CDS-Ecto-sp8_S_contig9693:4199..4315Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9693 4200..4315 +
1681145334.14572-CDS-Ecto-sp8_S_contig9693:4510..46371681145334.14572-CDS-Ecto-sp8_S_contig9693:4510..4637Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9693 4511..4637 +
1681145334.158834-CDS-Ecto-sp8_S_contig9693:5335..55771681145334.158834-CDS-Ecto-sp8_S_contig9693:5335..5577Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9693 5336..5577 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9693.31403.1prot_Ecto-sp8_S_contig9693.31403.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9693 1174..5577 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9693.31403.1

>prot_Ecto-sp8_S_contig9693.31403.1 ID=prot_Ecto-sp8_S_contig9693.31403.1|Name=mRNA_Ecto-sp8_S_contig9693.31403.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=209bp
MSMVYRQVEQAEPVDEARFNGEGGVRRQWWWQPGPVDSCCFCCSLRAGVG
ILAAKDLFYNGIWAAFYSRSDVEKMLRTAIAILQSAYDKDCKDAPVQTVD
CLQLSHNIEQAEFQVELLDNLPVIVYVEAVIAMLAGAVGLFAVFKSNALS
AKIYLWTWLPKFFVGLVGNYTVRAEMKQYGIDNGDGPGVVTGELVGVVFL
LYFVKVGRS
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mRNA from alignment at Ecto-sp8_S_contig9693:1174..5577+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9693.31403.1 ID=mRNA_Ecto-sp8_S_contig9693.31403.1|Name=mRNA_Ecto-sp8_S_contig9693.31403.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4404bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9693:1174..5577+ (Ectocarpus species8 EcLAC_412)
ATGTCGATGGTTTACCGCCAGGTGGAGCAAGCAGAGCCGGTTGATGAGGC
CCGCTTCAACGGGGAGGGCGGCGTACGACGACAGTGGTGGTGGCAGCCAG
GGCCCGTTGACTCGTGAGTGCGCTCCGTCATTTGGCTTTGACTTTGTTCG
AAAACCGCAGAGGGCAGCAACCCCGGCATGCCGCCCTCTCTCTGTCAGTT
GATGCTCAAAAGGGCGGTATGCCTTCAATCGGCTGTCACTGCTGCGCGCT
ACAGTTGCTCTACTACAGCAGTACAACAGCACTCTGCTGTGCGGAGGTAC
TCTTTAAAGAACAGCCTTTACAGATGGATGCACGAGTGGAAGGGACGCAT
GTAGCAAAGACCGAGCGAGGTGTACATGAAGTGGTTGAAGAGAACTATGA
TGTTGATGAATCTTGAAAGAAGCAAACGCACCAGGTATTGTACGGCAGAC
ACACAAGACCAGGCGGAAGGCATCGCGAAAAGCAGAAATCGTTGACTGTC
GCACAGGGCGGCGGTAGAGGTTCCTCAAAACATACATTTTCACGCGTCCA
CCTCCACACGCCTCCTTTGAAAACAAGATATAATTCACTCTATTCTAAAT
TCAAGCCAAAGTACCAAAACGGCAGGCGCTCGAAATAAGGTCTGTGTTGC
CAAGGACCCTGGTGCATAGTACTACAGAGTAGTACTCTAGAGGGCATCCA
ATAACCGCAGAGGGCAGCAACCGCGGCATGCCGCCCTCTCTCTGTCAGTT
GATGCTCAGAAGGGCGGTATGCCTTCAATCGGCTGCCACTGCTGCGCGCT
ACAGTTGCTCTACTACAGCAGTACAACAGCACTCTGCTGTGCGGAGGTAC
AGCCTTTACAGATGGATGCACGAGTGGAAGGGACGCATGTAGCAAAGACC
GAGCGAGGTGTACATGAAGTGGTTGAAGAGAACTTTGATGTTGATGAATC
TTGAAAGAAAGCAAACGCACCAGGTATTACACGGCAGACACACAAGACCA
GGCGGAAGGCATCGCGAAAAGCAGAAATCGTTGACTGTCGCACAGGGCGG
CAGTAGAGGTTGCTCAAAACATACATTTTCACGCGTCTACCTCAATACGC
CTCCTTTGAAATTCAAGATAAAATTTACTCTTATCTAAATTCAAACCAAA
GTACCCAAAACGGCAGGCGCTCGAAATAAGGTCGGTGTTGCCAGGACCCT
GGTGCATAGTACTATACAGAGTAGTACTCTAGAGGGCATCCAATAGCAGC
GGTGTGCGTGTGTGTTTGGCGTACTCGAATATGCTTCTGTGTTGGTGATA
TCGGGGGCCGAAAGTTATGGTAGTGGCCTACAACAGTCTCCGCACTCCGC
AAATTCGACCGAGAGCCCGTGTCTTGCTGCTTGTGCTCGCCACCACTGAC
CCCAATCTCCTGAACTGCGGGTTTACAGCAGTAGCGGATGTCACCAGCTG
CTGCTGACAACCAGGGGTTTCCGGTCCGTGGCGTTGAGCACGGTTAGCTG
TGACAAATGTTGGATTCCGCTTGGCTCCGACGCAGATTTCGGACTGTTTT
CAGAGGCTGCTGCGACCTCCGCGAATTTCAGCTCCAGTAGCTAACCTGCC
AGCATCCCCGACGCCCCTTCATGGTGGCCTCTACCGATATTTGTAGTAAT
TACCCAGTTCCTCCCTGGCGGAAGATTGTTTTCTTTCTTTGGATTGGATT
TTAGTATGAGAAAAGAGCCGGCGTCAAAACCACTTGTTGGATGAAGCATG
CAATCGGGGAAGTTGGGTTAGGGTTAGAGTAAGGGGATACGGTCTGCGTG
CTTCCTCCGTGCTCTTTTTCTCCATAAACTTTACAAGGTCTCCCCCCGCA
GTGGGCTAAAGAGAGCACCGCGGCAGGGGGTGATGCAAGAACTGATACAT
AACGTGCCCTCTTTGCGCCCCGAACGCTGAGCCTTTTCGCGTTATTTTCG
CCTGCTCAGTCACTGTATGTACCTGGTACTTGTGAGGCTGGCTCTACTGG
AGGCTCTTCTTCCACCGCCGCCGCCGTAGGATAACTGCCGCGCGTGCTTT
CGTTTTTGAACTCCGCACTCGGCAGTTTTAAGCTCTTTGCGTTGTCTCTT
ACCTCCGCCGTTGTGTGGTGGGTGATTGCTGGTTGGGGGTGGGTGACGTG
CATGCTGTTGAAAATTACAACAAGTAGTGCTCAGCACAAAGTAGCACCTG
GATGTAGTAGCACCTGGATGTAGTCTACAGTGTGTGGACGTTAGGGCACG
AAATGGGTGCGGTCTGGCATTCCCTTTTCTACAGTTTCTGGAAGCCGCTT
CGTTTAAAGGAATCACGGGCTCCCCGCCGTTGAGAATTGAACCATCGCTG
CAGCCTTAACATTTCGGGTTGTACCAAGACTGTTCAGATGCGGAAAACAG
GCAAAGGACAACTTGAGCGGGCGACGCAAGCCCCTTTGTTTGCACACCAT
AGGTTTACGCCAATCGGTTGGGCCTGTTGCCTTCACCGCTTCCTTGCACT
GGCGACATCGGCAGAACGTCTGGATTAGACTAAAAACGCCACCTGCACCC
CATCCACGATCAACTGCTGTGTCTGTGCAACCCACTGCCGCATCCATGGT
CACCGTTGATGCTCGCCACCGGGCCAATGACGCAGATGCTGCTTCTGCTG
CTCTCTACGCGCGGGTGAGGGCTAGGGCGAGCACGCATTACAGTAGTCGG
CTTCCGTAGGATGCTGTTGCTGCTCTGAACGAGTCGGGGAGGGGTACAGG
CGGGGTTCCGTAGGCTCCAGAAATCGGCCGAGTCAGGCGGAGTTTAGGTC
GGCCCCGCCGTGGGCGGAAGCGAGTTTTTGAGGGGGCAGGTGGAGTTGCC
ACCTTTGCGCATGTTTCTGCGGGCAGTAAAACAATTGCTTCGCCGAAGTC
TTCCAAACCCGGACCCCCCCCCCCACCATGTTTTGCCACAAACTTGCAAC
AAATATTTTGTACCTGCGGTCATGCACGAAACGTTTTGTGTTGCATCGTG
CATCCGAACGTATTACCGTCGGCCAGGTGTGGGCATCCTCGCCGCGAAAG
ATCTGTTTTATAATGGCATCTGGGCAGCGTTCTACTCGAGAAGTGACGTC
GAGAAGATGCTGCGCACCGCCATCGCGATTCTGCAGTCGGCGGTGAGAGC
TTGGCGAGGGCACGAGCAACGAATACACTTATTGTTGGCGGTTTGGGAGA
ACTGATGGCGGCATGTCGTGTTGCAGACTGTCCAACCCGCCCTTTTCCAG
CCTCGATCGTACTTCTTGACCACAGTTTCCTCATGCCCCTCAAAATCACA
CCGCTCGTTTGCTGCGATAACGCTATTGTGCATTCAGTACGACAAGGACT
GCAAAGATGCCCCCGTTCAGACGGTAGACTGCCTGCAGCTCAGCCACAAT
ATTGAGCAAGCGGAATTCCAAGTCGAACTGCTCGACAACCTCCCGGTCAT
CGTGTACGTGGAAGGTATGCCCGCCCCTGCGGGGTGAAATGACGTTGTCT
CTTCTGGACTGTTTCACCGCTGCCATGCTGTCACTCGCAATGGGCCGCAG
GGGGTGGGTGCAGACGACGAAAAGTGCACATCGTCAGGTAACGTTGATGT
TGAACGGCCGGGGGAGTGCGCGTGGAGAATTTCCACGAGTGTGGCGCGGA
AAGAATCCGGCCGCAGGTGTAGCTGGACTTACGTGGGGTACTGCTGTAGG
ACAGATGAAAGGGAAGCACTGGACAGCTGAGTGGCAATGGGTAGTGCGCA
TCTTGATGGGAGAGAGTAGGAGACGTGCTGTTCCCCACTACGGCACATGC
CGGGCGGCAGGCGTCGCCCGCAACACCGCCGTAGCAAATAGCTCCGAAAA
GTGGAGTTGTGGCTATTTTTGTTGGGACAGAGTCCAACCTAGTCGTGAGA
CGTGGCATGAAGGAATGAAACGAAGCGCAGATGTTTCTTCCCCAGGCATG
GCCGGAAGCGAGGAGGCAGCGGCCGAAAGGCATGCAAGGAATGGTATTTG
CACTAGAGAGTGATGTGTTTGTGCAGCCCGATCTGCAACAACTTGCGCCC
GGAGCTTCGCAAGAGTGCGCTCTCAATCCATCCCGCGCACTTGGGTCTGT
TTCTCTCTCTTCCCCGCAACGTCCCACGCAACACAATCGAAAAAAATACC
TTTCGACATCAGCGGTCATCGCCATGCTCGCCGGCGCGGTCGGTCTATTC
GCTGTCTTCAAGTCCAACGCGCTGTCGGCCAAGATTTACCTCTGGACGTG
GCTGCCAAAGTTTTTCGTTGGCCTGGTGGGTAATTACACAGTGCGTGCCG
AGATGAAGCAGTACGGGATCGACAACGGCGATGGGCCGGGAGTCGTGACT
GGCGAGCTTGTGGGTGTGGTCTTCCTTCTCTACTTCGTTAAGGTGGGACG
GTCT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9693:1174..5577+

>mRNA_Ecto-sp8_S_contig9693.31403.1 ID=mRNA_Ecto-sp8_S_contig9693.31403.1|Name=mRNA_Ecto-sp8_S_contig9693.31403.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=627bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9693:1174..5577+ (Ectocarpus species8 EcLAC_412)
ATGTCGATGGTTTACCGCCAGGTGGAGCAAGCAGAGCCGGTTGATGAGGC
CCGCTTCAACGGGGAGGGCGGCGTACGACGACAGTGGTGGTGGCAGCCAG
GGCCCGTTGACTCATGCTGCTTCTGCTGCTCTCTACGCGCGGGTGTGGGC
ATCCTCGCCGCGAAAGATCTGTTTTATAATGGCATCTGGGCAGCGTTCTA
CTCGAGAAGTGACGTCGAGAAGATGCTGCGCACCGCCATCGCGATTCTGC
AGTCGGCGTACGACAAGGACTGCAAAGATGCCCCCGTTCAGACGGTAGAC
TGCCTGCAGCTCAGCCACAATATTGAGCAAGCGGAATTCCAAGTCGAACT
GCTCGACAACCTCCCGGTCATCGTGTACGTGGAAGCGGTCATCGCCATGC
TCGCCGGCGCGGTCGGTCTATTCGCTGTCTTCAAGTCCAACGCGCTGTCG
GCCAAGATTTACCTCTGGACGTGGCTGCCAAAGTTTTTCGTTGGCCTGGT
GGGTAATTACACAGTGCGTGCCGAGATGAAGCAGTACGGGATCGACAACG
GCGATGGGCCGGGAGTCGTGACTGGCGAGCTTGTGGGTGTGGTCTTCCTT
CTCTACTTCGTTAAGGTGGGACGGTCT
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