mRNA_Ecto-sp8_S_contig96891.31395.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig96891.31395.1
Unique NamemRNA_Ecto-sp8_S_contig96891.31395.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig96891.31395.1 vs. uniprot
Match: A0A7S4ULU5_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4ULU5_9DINO)

HSP 1 Score: 57.4 bits (137), Expect = 2.430e-8
Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:   13 VSCSGGCGAIYCGEDCRRRCWGSGHSLLCLGLVDDEHHPLVRHK 144
            V CS GCG +YC  +CR   +   H+LLC+GL++DE HPL+R K
Sbjct:   68 VRCSQGCGELYCSAECRDAHFKHSHNLLCVGLLEDEDHPLIRFK 111
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig96891.31395.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4ULU5_9DINO2.430e-852.27Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig96891contigEcto-sp8_S_contig96891:11..154 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size144
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size144
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145333.5251222-CDS-Ecto-sp8_S_contig96891:10..1541681145333.5251222-CDS-Ecto-sp8_S_contig96891:10..154Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig96891 11..154 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig96891.31395.1prot_Ecto-sp8_S_contig96891.31395.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig96891 11..154 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig96891.31395.1

>prot_Ecto-sp8_S_contig96891.31395.1 ID=prot_Ecto-sp8_S_contig96891.31395.1|Name=mRNA_Ecto-sp8_S_contig96891.31395.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=48bp
RQPTVSCSGGCGAIYCGEDCRRRCWGSGHSLLCLGLVDDEHHPLVRHK
back to top

mRNA from alignment at Ecto-sp8_S_contig96891:11..154-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig96891.31395.1 ID=mRNA_Ecto-sp8_S_contig96891.31395.1|Name=mRNA_Ecto-sp8_S_contig96891.31395.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=144bp|location=Sequence derived from alignment at Ecto-sp8_S_contig96891:11..154- (Ectocarpus species8 EcLAC_412)
CGGCAGCCTACCGTCTCCTGCTCGGGCGGTTGCGGCGCGATCTACTGCGG
CGAGGACTGCCGTCGGAGGTGCTGGGGCTCGGGGCACTCCCTCCTCTGTC
TCGGTCTCGTTGACGATGAGCACCACCCTCTCGTTCGTCACAAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig96891:11..154-

>mRNA_Ecto-sp8_S_contig96891.31395.1 ID=mRNA_Ecto-sp8_S_contig96891.31395.1|Name=mRNA_Ecto-sp8_S_contig96891.31395.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp8_S_contig96891:11..154- (Ectocarpus species8 EcLAC_412)
CGGCAGCCTACCGTCTCCTGCTCGGGCGGTTGCGGCGCGATCTACTGCGG
CGAGGACTGCCGTCGGAGGTGCTGGGGCTCGGGGCACTCCCTCCTCTGTC
TCGGTCTCGTTGACGATGAGCACCACCCTCTCGTTCGTCACAAG
back to top