mRNA_Ecto-sp8_S_contig96861.31392.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig96861.31392.1
Unique NamemRNA_Ecto-sp8_S_contig96861.31392.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig96861.31392.1 vs. uniprot
Match: D8LL04_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL04_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 1.760e-29
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 1 
Query:    1 GPASAGLPSRCFQAIEAHSSGVNGVVFEKGGVLLATAGDDSYVKVWDPGSGRQRAALK 174
            GPAS GLPSRCFQAIEAHSSGVNGVVFEKGGVLLATAGDDSYVKVWDPGSGRQRAALK
Sbjct:  237 GPASTGLPSRCFQAIEAHSSGVNGVVFEKGGVLLATAGDDSYVKVWDPGSGRQRAALK 294
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BLAST of mRNA_Ecto-sp8_S_contig96861.31392.1 vs. uniprot
Match: K9WXT8_9NOST (WD40 repeat-containing protein n=1 Tax=Cylindrospermum stagnale PCC 7417 TaxID=56107 RepID=K9WXT8_9NOST)

HSP 1 Score: 52.0 bits (123), Expect = 3.470e-6
Identity = 22/45 (48.89%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:   19 LPSRCFQAIEAHSSGVNGVVFEKGGVLLATAGDDSYVKVWDPGSG 153
            L  +C + +E H+SGV  V+F   G LLATAGDD  V++WD  +G
Sbjct: 1095 LSGKCIKTLEGHTSGVYFVIFSPDGSLLATAGDDQTVRIWDANTG 1139
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BLAST of mRNA_Ecto-sp8_S_contig96861.31392.1 vs. uniprot
Match: UPI001885FD9B (protein Atg16l2-like n=1 Tax=Syngnathus acus TaxID=161584 RepID=UPI001885FD9B)

HSP 1 Score: 50.8 bits (120), Expect = 8.760e-6
Identity = 26/53 (49.06%), Postives = 30/53 (56.60%), Query Frame = 1 
Query:    4 PASAGLPSRCFQAIEAHSSGVNGVVFEKGGVLLATAGDDSYVKVWDPGSGRQR 162
            PASA LP R    +EAH  GVN   F     LLA+AG D  VKVW+  +G  R
Sbjct:  267 PASARLPGRALHVLEAHEQGVNTAAFCSSSALLASAGTDRVVKVWEVRAGTLR 319
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BLAST of mRNA_Ecto-sp8_S_contig96861.31392.1 vs. uniprot
Match: A0A2J6QQX4_9HELO (NACHT domain-containing protein n=1 Tax=Hyaloscypha hepaticicola TaxID=2082293 RepID=A0A2J6QQX4_9HELO)

HSP 1 Score: 50.8 bits (120), Expect = 8.870e-6
Identity = 25/50 (50.00%), Postives = 29/50 (58.00%), Query Frame = 1 
Query:    4 PASAGLPSRCFQAIEAHSSGVNGVVFEKGGVLLATAGDDSYVKVWDPGSG 153
            P   G  S C Q +E HS  V  V F   G LLA+A DDS V++WD GSG
Sbjct:  777 PVIGGYWSACLQTLEGHSCPVTAVAFSPDGKLLASASDDSTVRLWDAGSG 826
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BLAST of mRNA_Ecto-sp8_S_contig96861.31392.1 vs. uniprot
Match: A0A6A6UWL7_9PLEO (WD40 repeat-like protein n=1 Tax=Sporormia fimetaria CBS 119925 TaxID=1340428 RepID=A0A6A6UWL7_9PLEO)

HSP 1 Score: 50.1 bits (118), Expect = 1.490e-5
Identity = 24/50 (48.00%), Postives = 30/50 (60.00%), Query Frame = 1 
Query:    4 PASAGLPSRCFQAIEAHSSGVNGVVFEKGGVLLATAGDDSYVKVWDPGSG 153
            PA +G  S C Q +E HS GV+ V F      LA+A DDS +K+WD  SG
Sbjct:   72 PAISGGWSACLQTLEGHSDGVSSVAFSHDSTRLASASDDSTLKIWDASSG 121
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BLAST of mRNA_Ecto-sp8_S_contig96861.31392.1 vs. uniprot
Match: R0IBC1_SETT2 (Uncharacterized protein n=1 Tax=Setosphaeria turcica (strain 28A) TaxID=671987 RepID=R0IBC1_SETT2)

HSP 1 Score: 50.1 bits (118), Expect = 1.620e-5
Identity = 25/51 (49.02%), Postives = 28/51 (54.90%), Query Frame = 1 
Query:   25 SRCFQAIEAHSSGVNGVVFEKGGVLLATAGDDSYVKVWDPGSGRQRAALKV 177
            S C Q +E HSS VN V F      LA+A DDS VK+WD  SG     L V
Sbjct:  279 SACLQTLEGHSSYVNSVAFSHDSTRLASASDDSTVKIWDASSGACLQTLDV 329
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BLAST of mRNA_Ecto-sp8_S_contig96861.31392.1 vs. uniprot
Match: A0A4Q4WRL7_9PEZI (NACHT domain-containing protein n=1 Tax=Monosporascus sp. mg162 TaxID=1081914 RepID=A0A4Q4WRL7_9PEZI)

HSP 1 Score: 50.1 bits (118), Expect = 1.670e-5
Identity = 22/43 (51.16%), Postives = 26/43 (60.47%), Query Frame = 1 
Query:   25 SRCFQAIEAHSSGVNGVVFEKGGVLLATAGDDSYVKVWDPGSG 153
            S C Q +E HS  VN V F      LA+A DD+ VK+WD GSG
Sbjct:  929 SACLQTLEGHSDSVNSVAFSHDSARLASASDDTTVKIWDAGSG 971
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BLAST of mRNA_Ecto-sp8_S_contig96861.31392.1 vs. uniprot
Match: A0A7C9JHA3_9ACTN (Uncharacterized protein n=1 Tax=Herbidospora solisilvae TaxID=2696284 RepID=A0A7C9JHA3_9ACTN)

HSP 1 Score: 49.3 bits (116), Expect = 3.090e-5
Identity = 22/36 (61.11%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:   52 HSSGVNGVVFEKGGVLLATAGDDSYVKVWDPGSGRQ 159
            H+S V GV F  GG LLATAG D  V++WDPG+G+Q
Sbjct:  489 HTSPVRGVAFSPGGHLLATAGGDRTVRLWDPGTGQQ 524
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BLAST of mRNA_Ecto-sp8_S_contig96861.31392.1 vs. uniprot
Match: UPI001942B8A0 (NB-ARC domain-containing protein n=1 Tax=Actinoplanes tereljensis TaxID=571912 RepID=UPI001942B8A0)

HSP 1 Score: 48.9 bits (115), Expect = 4.260e-5
Identity = 23/51 (45.10%), Postives = 29/51 (56.86%), Query Frame = 1 
Query:   19 LPSRCFQAIEAHSSGVNGVVFEKGGVLLATAGDDSYVKVWDPGSGRQRAAL 171
            LP    + +  HS  V  V F   G LLA+AGDD  V +WDP +G +RA L
Sbjct:  654 LPEASLRTLAGHSGWVRAVAFSPDGQLLASAGDDGAVLLWDPTTGERRARL 704
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BLAST of mRNA_Ecto-sp8_S_contig96861.31392.1 vs. uniprot
Match: R0IBQ2_SETT2 (NACHT domain-containing protein n=1 Tax=Setosphaeria turcica (strain 28A) TaxID=671987 RepID=R0IBQ2_SETT2)

HSP 1 Score: 48.5 bits (114), Expect = 5.830e-5
Identity = 21/43 (48.84%), Postives = 26/43 (60.47%), Query Frame = 1 
Query:   25 SRCFQAIEAHSSGVNGVVFEKGGVLLATAGDDSYVKVWDPGSG 153
            S C Q +E HSSG+  V F      LA+A +DS VK+WD  SG
Sbjct:  827 SACLQTLEGHSSGITSVTFSHDSTRLASASEDSTVKIWDASSG 869
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig96861.31392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D8LL04_ECTSI1.760e-2998.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
K9WXT8_9NOST3.470e-648.89WD40 repeat-containing protein n=1 Tax=Cylindrospe... [more]
UPI001885FD9B8.760e-649.06protein Atg16l2-like n=1 Tax=Syngnathus acus TaxID... [more]
A0A2J6QQX4_9HELO8.870e-650.00NACHT domain-containing protein n=1 Tax=Hyaloscyph... [more]
A0A6A6UWL7_9PLEO1.490e-548.00WD40 repeat-like protein n=1 Tax=Sporormia fimetar... [more]
R0IBC1_SETT21.620e-549.02Uncharacterized protein n=1 Tax=Setosphaeria turci... [more]
A0A4Q4WRL7_9PEZI1.670e-551.16NACHT domain-containing protein n=1 Tax=Monosporas... [more]
A0A7C9JHA3_9ACTN3.090e-561.11Uncharacterized protein n=1 Tax=Herbidospora solis... [more]
UPI001942B8A04.260e-545.10NB-ARC domain-containing protein n=1 Tax=Actinopla... [more]
R0IBQ2_SETT25.830e-548.84NACHT domain-containing protein n=1 Tax=Setosphaer... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig96861contigEcto-sp8_S_contig96861:198..380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score117.9
Seed ortholog evalue1.7e-24
Seed eggNOG ortholog2880.D8LL04
Model size183
KEGG koko:K17890
KEGG Pathwayko04136,ko04138,ko04140,ko04621,map04136,map04138,map04140,map04621
Hectar predicted targeting categoryother localisation
GOsGO:0000045,GO:0000421,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005776,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006897,GO:0006907,GO:0006909,GO:0006914,GO:0006950,GO:0006952,GO:0006996,GO:0007033,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0010498,GO:0016020,GO:0016043,GO:0016192,GO:0016236,GO:0016740,GO:0019538,GO:0019776,GO:0019941,GO:0022607,GO:0030163,GO:0030587,GO:0031090,GO:0031154,GO:0032502,GO:0032991,GO:0034274,GO:0035973,GO:0042742,GO:0043161,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048856,GO:0050830,GO:0050896,GO:0051179,GO:0051234,GO:0051603,GO:0051703,GO:0051704,GO:0051707,GO:0061912,GO:0061919,GO:0070925,GO:0071704,GO:0071840,GO:0090382,GO:0090702,GO:0098542,GO:0098588,GO:0098657,GO:0098805,GO:0099120,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905037,GO:1990234
Exons1
EggNOG free text desc.negative stranded viral RNA replication
EggNOG OGsKOG0288@1,KOG0288@2759
Cds size183
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145333.251664-CDS-Ecto-sp8_S_contig96861:197..3801681145333.251664-CDS-Ecto-sp8_S_contig96861:197..380Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig96861 198..380 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig96861.31392.1prot_Ecto-sp8_S_contig96861.31392.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig96861 198..380 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig96861.31392.1

>prot_Ecto-sp8_S_contig96861.31392.1 ID=prot_Ecto-sp8_S_contig96861.31392.1|Name=mRNA_Ecto-sp8_S_contig96861.31392.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=61bp
GPASAGLPSRCFQAIEAHSSGVNGVVFEKGGVLLATAGDDSYVKVWDPGS
GRQRAALKVR*
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mRNA from alignment at Ecto-sp8_S_contig96861:198..380+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig96861.31392.1 ID=mRNA_Ecto-sp8_S_contig96861.31392.1|Name=mRNA_Ecto-sp8_S_contig96861.31392.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=183bp|location=Sequence derived from alignment at Ecto-sp8_S_contig96861:198..380+ (Ectocarpus species8 EcLAC_412)
GGTCCCGCATCTGCGGGCTTGCCGAGCAGGTGCTTTCAGGCTATCGAGGC
TCACTCTTCTGGCGTGAACGGGGTGGTGTTCGAGAAGGGAGGGGTCTTGC
TGGCCACCGCGGGCGACGACTCGTACGTTAAGGTGTGGGACCCAGGCTCA
GGGCGGCAGAGGGCAGCTCTAAAGGTGAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig96861:198..380+

>mRNA_Ecto-sp8_S_contig96861.31392.1 ID=mRNA_Ecto-sp8_S_contig96861.31392.1|Name=mRNA_Ecto-sp8_S_contig96861.31392.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=183bp|location=Sequence derived from alignment at Ecto-sp8_S_contig96861:198..380+ (Ectocarpus species8 EcLAC_412)
GGTCCCGCATCTGCGGGCTTGCCGAGCAGGTGCTTTCAGGCTATCGAGGC
TCACTCTTCTGGCGTGAACGGGGTGGTGTTCGAGAAGGGAGGGGTCTTGC
TGGCCACCGCGGGCGACGACTCGTACGTTAAGGTGTGGGACCCAGGCTCA
GGGCGGCAGAGGGCAGCTCTAAAGGTGAGGTGA
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