mRNA_Ecto-sp8_S_contig96807.31386.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig96807.31386.1
Unique NamemRNA_Ecto-sp8_S_contig96807.31386.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig96807.31386.1 vs. uniprot
Match: D7FL16_ECTSI (Fibronectin type III domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL16_ECTSI)

HSP 1 Score: 258 bits (659), Expect = 8.760e-78
Identity = 140/187 (74.87%), Postives = 155/187 (82.89%), Query Frame = 1 
Query:    4 PDGTNVYLTGKETDSIVIFDVDPSDGGLTMVGEFAMNSNSSAVETGALDGPTALVTFPDGRCLFVAAVDNSSLTSLRVGDDASGGG--SGSLIYAGSVSDVALADAWDVVVSPSPGDHVYVSSSACGCIMTFAADLDTCGLTYLFNTTSSLVAPAGMAVSPDGSLAYATDPGSSGGGALVVFSRDPE 558
            PDGT+VYLTGKET+SIV+FDVDPSDG LTMVGE AM++NS+A E GALDGPTAL T PDGRCLFVAAV +SSLTSLR+GD + GGG  +GSL ++  VSD ALAD WDVVVS   GDHVYVSS ACGCIMTFAADLDTCGLTY  N T SLVAPAGM+VSPDGSL YATD   SGG AL +F  DP+
Sbjct:  388 PDGTHVYLTGKETNSIVVFDVDPSDGRLTMVGESAMDNNSAA-EAGALDGPTALATSPDGRCLFVAAVGSSSLTSLRIGDGSIGGGEGTGSLSFSARVSDTALADTWDVVVSLPSGDHVYVSSPACGCIMTFAADLDTCGLTYRSNVTFSLVAPAGMSVSPDGSLLYATDSAMSGG-ALALFGTDPD 572
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BLAST of mRNA_Ecto-sp8_S_contig96807.31386.1 vs. uniprot
Match: D7FP51_ECTSI (Fibronectin type III domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP51_ECTSI)

HSP 1 Score: 233 bits (593), Expect = 7.170e-71
Identity = 124/186 (66.67%), Postives = 143/186 (76.88%), Query Frame = 1 
Query:    1 TPDGTNVYLTGKETDSIVIFDVDPSDGGLTMVGEFAMNSNSSAVETGALDGPTALVTFPDGRCLFVAAVDNSSLTSLRVGDDASGGGSGSLIYAGSVSDVALADAWDVVVSPSPGDHVYVSSSACGCIMTFAADLDTCGLTYLFNTTSSLVAPAGMAVSPDGSLAYATDPGSSGGGALVVFSRDPE 558
            TPDGT+VYLTGKE+DSIV F+VD SDG LTMVG+F MN+  +    G LDGPT L   PDGRCLFV A  N+SLTSL +     G GSG+L YAG+VS  ALA+AWDVV SP  GDHVYVSS ACGCI+TFAADL+TCGLTY+ N T SLV+P GMAVSPDG   Y TD  +SGG AL++FSRDP+
Sbjct:   55 TPDGTHVYLTGKESDSIVAFEVDSSDGSLTMVGDFDMNTGGTGA--GTLDGPTVLTPSPDGRCLFVVAAGNNSLTSLSI----DGAGSGNLTYAGTVSGAALAEAWDVVASPLLGDHVYVSSPACGCIITFAADLETCGLTYVSNVTESLVSPTGMAVSPDGLFLYGTDSVASGG-ALMLFSRDPQ 233
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig96807.31386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FL16_ECTSI8.760e-7874.87Fibronectin type III domain protein n=1 Tax=Ectoca... [more]
D7FP51_ECTSI7.170e-7166.67Fibronectin type III domain protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig96807contigEcto-sp8_S_contig96807:8..565 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop0
Start0
Seed ortholog score69.7
Seed ortholog evalue1.6e-09
Seed eggNOG ortholog382464.ABSI01000010_gene3321
Model size558
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.6-phosphogluconolactonase activity
EggNOG OGsCOG2706@1,COG2706@2,COG3210@1,COG3210@2,COG4733@1,COG4733@2
Cds size558
COG Functional cat.G
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145332.880548-CDS-Ecto-sp8_S_contig96807:7..5651681145332.880548-CDS-Ecto-sp8_S_contig96807:7..565Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig96807 8..565 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig96807.31386.1prot_Ecto-sp8_S_contig96807.31386.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig96807 8..565 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig96807.31386.1

>prot_Ecto-sp8_S_contig96807.31386.1 ID=prot_Ecto-sp8_S_contig96807.31386.1|Name=mRNA_Ecto-sp8_S_contig96807.31386.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=186bp
TPDGTNVYLTGKETDSIVIFDVDPSDGGLTMVGEFAMNSNSSAVETGALD
GPTALVTFPDGRCLFVAAVDNSSLTSLRVGDDASGGGSGSLIYAGSVSDV
ALADAWDVVVSPSPGDHVYVSSSACGCIMTFAADLDTCGLTYLFNTTSSL
VAPAGMAVSPDGSLAYATDPGSSGGGALVVFSRDPE
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mRNA from alignment at Ecto-sp8_S_contig96807:8..565-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig96807.31386.1 ID=mRNA_Ecto-sp8_S_contig96807.31386.1|Name=mRNA_Ecto-sp8_S_contig96807.31386.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=558bp|location=Sequence derived from alignment at Ecto-sp8_S_contig96807:8..565- (Ectocarpus species8 EcLAC_412)
ACTCCCGACGGCACCAACGTGTACCTGACGGGGAAGGAGACCGACAGCAT
CGTTATCTTCGACGTGGATCCCTCCGACGGCGGTCTGACGATGGTCGGTG
AGTTTGCCATGAACAGTAACAGCAGCGCTGTGGAGACGGGGGCCCTCGAC
GGCCCCACCGCCCTCGTGACGTTCCCCGACGGGCGGTGTCTCTTCGTGGC
GGCCGTGGACAACAGCTCGCTCACCAGCCTGCGAGTAGGCGACGATGCCA
GCGGCGGGGGATCGGGATCCCTGATCTACGCGGGCTCTGTCAGCGATGTG
GCGCTGGCGGACGCCTGGGACGTCGTCGTCAGCCCCTCGCCGGGAGACCA
CGTGTACGTGTCGTCCTCGGCGTGCGGGTGCATCATGACGTTCGCGGCCG
ATCTGGACACGTGCGGGTTGACGTACCTGTTCAACACGACCTCGTCTCTC
GTCGCTCCGGCGGGAATGGCCGTCTCACCCGACGGGTCGCTCGCGTACGC
CACGGACCCGGGATCATCTGGCGGCGGCGCCCTTGTGGTGTTCAGCAGAG
ACCCGGAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig96807:8..565-

>mRNA_Ecto-sp8_S_contig96807.31386.1 ID=mRNA_Ecto-sp8_S_contig96807.31386.1|Name=mRNA_Ecto-sp8_S_contig96807.31386.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=558bp|location=Sequence derived from alignment at Ecto-sp8_S_contig96807:8..565- (Ectocarpus species8 EcLAC_412)
ACTCCCGACGGCACCAACGTGTACCTGACGGGGAAGGAGACCGACAGCAT
CGTTATCTTCGACGTGGATCCCTCCGACGGCGGTCTGACGATGGTCGGTG
AGTTTGCCATGAACAGTAACAGCAGCGCTGTGGAGACGGGGGCCCTCGAC
GGCCCCACCGCCCTCGTGACGTTCCCCGACGGGCGGTGTCTCTTCGTGGC
GGCCGTGGACAACAGCTCGCTCACCAGCCTGCGAGTAGGCGACGATGCCA
GCGGCGGGGGATCGGGATCCCTGATCTACGCGGGCTCTGTCAGCGATGTG
GCGCTGGCGGACGCCTGGGACGTCGTCGTCAGCCCCTCGCCGGGAGACCA
CGTGTACGTGTCGTCCTCGGCGTGCGGGTGCATCATGACGTTCGCGGCCG
ATCTGGACACGTGCGGGTTGACGTACCTGTTCAACACGACCTCGTCTCTC
GTCGCTCCGGCGGGAATGGCCGTCTCACCCGACGGGTCGCTCGCGTACGC
CACGGACCCGGGATCATCTGGCGGCGGCGCCCTTGTGGTGTTCAGCAGAG
ACCCGGAG
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