mRNA_Ecto-sp8_S_contig96529.31344.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig96529.31344.1
Unique NamemRNA_Ecto-sp8_S_contig96529.31344.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig96529.31344.1 vs. uniprot
Match: A0A6H5JJV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV6_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 6.810e-27
Identity = 61/90 (67.78%), Postives = 64/90 (71.11%), Query Frame = 1 
Query:   52 MAAVAAEQRSSVEHMQDRTQRGLQVAVVSGFVKDCRGVHQSCLALCNACREGVPVELMRVSELVPQTRLTMFLPQG------AEAPPTRV 303
            MAAVA E  SS EHM+DR  RGLQVAVVSGF+KDCR V +SCL LCNACREGVPVE M V E VPQ  L M LP        AE PPTRV
Sbjct:    1 MAAVAMENWSSEEHMRDRALRGLQVAVVSGFMKDCRSVQESCLGLCNACREGVPVERMLVREWVPQILLAMVLPNAVQAQREAEIPPTRV 90
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BLAST of mRNA_Ecto-sp8_S_contig96529.31344.1 vs. uniprot
Match: A0A6H5JNP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNP2_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 7.970e-23
Identity = 55/90 (61.11%), Postives = 61/90 (67.78%), Query Frame = 1 
Query:   52 MAAVAAEQRSSVEHMQDRTQRGLQVAVVSGFVKDCRGVHQSCLALCNACREGVPVELMRVSELVPQTRLTMFLPQGAEA------PPTRV 303
            MAA A E+    EHM+DR  R LQ AVVSGFVKD R    SCL LCNACREGVPVE M ++E VPQTRL M LP+  +A      PPTRV
Sbjct:    1 MAAAAVEECPGEEHMRDRALRALQFAVVSGFVKDYRATQASCLGLCNACREGVPVERMLIAEGVPQTRLAMVLPKVVQAQWEADIPPTRV 90
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig96529.31344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJV6_9PHAE6.810e-2767.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNP2_9PHAE7.970e-2361.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig96529contigEcto-sp8_S_contig96529:23..326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size304
Hectar predicted targeting categoryother localisation
Exons1
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145329.801219-CDS-Ecto-sp8_S_contig96529:22..3251681145329.801219-CDS-Ecto-sp8_S_contig96529:22..325Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig96529 23..325 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig96529.31344.1prot_Ecto-sp8_S_contig96529.31344.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig96529 23..325 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig96529.31344.1

>prot_Ecto-sp8_S_contig96529.31344.1 ID=prot_Ecto-sp8_S_contig96529.31344.1|Name=mRNA_Ecto-sp8_S_contig96529.31344.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=101bp
GYIPVRRHWKAVAHDISMAAVAAEQRSSVEHMQDRTQRGLQVAVVSGFVK
DCRGVHQSCLALCNACREGVPVELMRVSELVPQTRLTMFLPQGAEAPPTR
V
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mRNA from alignment at Ecto-sp8_S_contig96529:23..326+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig96529.31344.1 ID=mRNA_Ecto-sp8_S_contig96529.31344.1|Name=mRNA_Ecto-sp8_S_contig96529.31344.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=304bp|location=Sequence derived from alignment at Ecto-sp8_S_contig96529:23..326+ (Ectocarpus species8 EcLAC_412)
GGGTATATCCCGGTAAGGCGCCACTGGAAAGCAGTTGCGCACGATATTTC
CATGGCGGCGGTTGCTGCGGAACAACGGTCGAGCGTGGAGCACATGCAAG
ACCGTACTCAACGCGGGTTGCAGGTCGCCGTTGTTTCCGGCTTCGTGAAG
GACTGTCGGGGCGTACATCAATCTTGCCTTGCCCTGTGTAACGCATGTCG
GGAGGGCGTGCCAGTTGAGCTCATGCGTGTCAGCGAATTGGTGCCGCAGA
CACGCCTGACGATGTTTCTCCCGCAGGGCGCTGAAGCCCCACCAACGAGA
GTGC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig96529:23..326+

>mRNA_Ecto-sp8_S_contig96529.31344.1 ID=mRNA_Ecto-sp8_S_contig96529.31344.1|Name=mRNA_Ecto-sp8_S_contig96529.31344.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp8_S_contig96529:23..326+ (Ectocarpus species8 EcLAC_412)
GGGTATATCCCGGTAAGGCGCCACTGGAAAGCAGTTGCGCACGATATTTC
CATGGCGGCGGTTGCTGCGGAACAACGGTCGAGCGTGGAGCACATGCAAG
ACCGTACTCAACGCGGGTTGCAGGTCGCCGTTGTTTCCGGCTTCGTGAAG
GACTGTCGGGGCGTACATCAATCTTGCCTTGCCCTGTGTAACGCATGTCG
GGAGGGCGTGCCAGTTGAGCTCATGCGTGTCAGCGAATTGGTGCCGCAGA
CACGCCTGACGATGTTTCTCCCGCAGGGCGCTGAAGCCCCACCAACGAGA
GTG
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