mRNA_Ecto-sp8_S_contig96465.31332.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig96465.31332.1
Unique NamemRNA_Ecto-sp8_S_contig96465.31332.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig96465.31332.1 vs. uniprot
Match: A0A6H5JIQ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIQ5_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.660e-17
Identity = 43/51 (84.31%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 VAIPLVLGYADVGTDVLAVVSYYQARHVWWFVLAMTFIIGPALFAAIVLLR 153
            V I LVLGYADVGTDV AVVSYYQA H+WWF L M FIIGPALFAAIVLLR
Sbjct:   66 VGIQLVLGYADVGTDVDAVVSYYQADHMWWFALGMIFIIGPALFAAIVLLR 116
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BLAST of mRNA_Ecto-sp8_S_contig96465.31332.1 vs. uniprot
Match: D8LBY3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBY3_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 1.630e-6
Identity = 21/40 (52.50%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    7 IPLVLGYADVGTDVLAVVSYYQARHVWWFVLAMTFIIGPA 126
            +P++LGYAD+ +D+   VSYY+ARH  WF L + F +GPA
Sbjct:  415 VPVLLGYADLASDLYTAVSYYEARHFVWFGLGLVFALGPA 454
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BLAST of mRNA_Ecto-sp8_S_contig96465.31332.1 vs. uniprot
Match: A0A6H5JJ93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ93_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 4.170e-6
Identity = 20/40 (50.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    7 IPLVLGYADVGTDVLAVVSYYQARHVWWFVLAMTFIIGPA 126
            +P++LGYAD+ +D+   VSYY+A+H  WF L + F +GPA
Sbjct:   68 VPVILGYADLASDLYTAVSYYEAKHFVWFGLGLFFALGPA 107
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig96465.31332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JIQ5_9PHAE1.660e-1784.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBY3_ECTSI1.630e-652.50Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JJ93_9PHAE4.170e-650.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig96465contigEcto-sp8_S_contig96465:148..300 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size153
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size153
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145328.6261237-CDS-Ecto-sp8_S_contig96465:147..3001681145328.6261237-CDS-Ecto-sp8_S_contig96465:147..300Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig96465 148..300 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig96465.31332.1prot_Ecto-sp8_S_contig96465.31332.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig96465 148..300 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig96465.31332.1

>prot_Ecto-sp8_S_contig96465.31332.1 ID=prot_Ecto-sp8_S_contig96465.31332.1|Name=mRNA_Ecto-sp8_S_contig96465.31332.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=51bp
VAIPLVLGYADVGTDVLAVVSYYQARHVWWFVLAMTFIIGPALFAAIVLL
R
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mRNA from alignment at Ecto-sp8_S_contig96465:148..300-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig96465.31332.1 ID=mRNA_Ecto-sp8_S_contig96465.31332.1|Name=mRNA_Ecto-sp8_S_contig96465.31332.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=153bp|location=Sequence derived from alignment at Ecto-sp8_S_contig96465:148..300- (Ectocarpus species8 EcLAC_412)
GTCGCCATCCCGTTGGTTCTTGGATACGCTGACGTTGGGACGGATGTGCT
TGCGGTGGTGTCCTATTACCAAGCCCGTCACGTGTGGTGGTTTGTCTTGG
CGATGACATTTATCATCGGACCTGCCTTGTTCGCTGCAATCGTCTTGCTT
CGT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig96465:148..300-

>mRNA_Ecto-sp8_S_contig96465.31332.1 ID=mRNA_Ecto-sp8_S_contig96465.31332.1|Name=mRNA_Ecto-sp8_S_contig96465.31332.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp8_S_contig96465:148..300- (Ectocarpus species8 EcLAC_412)
GTCGCCATCCCGTTGGTTCTTGGATACGCTGACGTTGGGACGGATGTGCT
TGCGGTGGTGTCCTATTACCAAGCCCGTCACGTGTGGTGGTTTGTCTTGG
CGATGACATTTATCATCGGACCTGCCTTGTTCGCTGCAATCGTCTTGCTT
CGT
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