mRNA_Ecto-sp8_S_contig9644.31330.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9644.31330.1
Unique NamemRNA_Ecto-sp8_S_contig9644.31330.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9644.31330.1 vs. uniprot
Match: D7G289_ECTSI (zf-LYAR domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G289_ECTSI)

HSP 1 Score: 533 bits (1372), Expect = 1.720e-184
Identity = 358/387 (92.51%), Postives = 362/387 (93.54%), Query Frame = 3 
Query:    3 CPSAQASGSSLLPQWTSLWPLPLPRLIILPPPLLRAELLADEMVYFVCESCNETLKKAQVDRHLYSCKSCWGVTCVDCNFTFEGDSFRAHTSCVSEDQKYQGALFKAPKAKQKNRGVNEIWADSVLLAASNASSGVAPKSLCAHLVRMGDLGNVPRQEKKFKNFVKNSLRVFDETSVSKLWAYVDGVKNDLTAKEKEATATPAAVAVTQVSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVDAATRKALAKAAIGAVKKAQDKKIAVKELVKQAAAAVLVARGTEGSSSGSSKEHQPDDQTLRRALKQRLKTGGLRHVTVEGKVAVYSKG 1163
            CPSA+AS SSLLPQW SLWPLPLPRL+ILPPPLLRAELLADEMVYFVCESCNETLKKAQVDRHLYSCKSCWGVTCVDCNFTFEGDSFRAHTSCVSEDQKYQGALFKAPKAKQKNRGVNEIWADSVLLAASNASSGVAPK LCAHLVRMGDLGNVPRQEKKFKNFVKNSLRVFDETSVSKLWAYVDGVKNDLTAKEKEATATPAA AV QV+A     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   XXXXXXXXXXXXXXX           GVDAATRKALAKAAIGAVKKAQ K+IAVKELVKQAAAAVLVARGTEGSSSGSSKEHQPDDQTLRRALKQRLKTGGLRHVTVEGKVAVYSKG
Sbjct:   19 CPSAKASSSSLLPQWASLWPLPLPRLLILPPPLLRAELLADEMVYFVCESCNETLKKAQVDRHLYSCKSCWGVTCVDCNFTFEGDSFRAHTSCVSEDQKYQGALFKAPKAKQKNRGVNEIWADSVLLAASNASSGVAPKPLCAHLVRMGDLGNVPRQEKKFKNFVKNSLRVFDETSVSKLWAYVDGVKNDLTAKEKEATATPAAAAVAQVTAVAEEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPRXXXXXXXXXXXXXXXGEEAEGARNGGGVDAATRKALAKAAIGAVKKAQGKRIAVKELVKQAAAAVLVARGTEGSSSGSSKEHQPDDQTLRRALKQRLKTGGLRHVTVEGKVAVYSKG 405
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BLAST of mRNA_Ecto-sp8_S_contig9644.31330.1 vs. uniprot
Match: A0A7R9UG70_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UG70_9STRA)

HSP 1 Score: 162 bits (411), Expect = 2.840e-42
Identity = 82/169 (48.52%), Postives = 115/169 (68.05%), Query Frame = 3 
Query:   96 PLLRAELLADEMVYFVCESCNETLKKAQVDRHLYSCKSCWGVTCVDCNFTFEGDSFRAHTSCVSEDQKYQGALFKAPKAKQKNRGVNEIWADSVLLAASNASSGVAPKSLCAHLVRMGDLGNVPRQEKKFKNFVKNSLRVFDETSVSKLWAYVDGVKNDLTAKEKEATA 602
            PL RA      MV+FVCE CNE+LKKAQVDRH   C++CW VTCVDC  TF  D +R+HTSC+SE +KY+ +    PK K++  G +E+W + V  A+ N +   AP  +   L ++  LGNVPR E+KF+NF+ NSLR+ DET V+++W Y+  +K+   A+++EATA
Sbjct:    7 PLQRALNRRKPMVFFVCEGCNESLKKAQVDRHAARCRACWAVTCVDCGKTFPDDEYRSHTSCISEAEKYEKSTRAVPKTKKQ--GPHEVWMEVVETASKNVAD--APPRIQGWLPKIQSLGNVPRVERKFRNFLGNSLRLRDETIVTEIWQYLSELKSRQKAEKQEATA 171
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BLAST of mRNA_Ecto-sp8_S_contig9644.31330.1 vs. uniprot
Match: A0A7S2SQW7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQW7_9STRA)

HSP 1 Score: 159 bits (403), Expect = 4.060e-41
Identity = 76/147 (51.70%), Postives = 99/147 (67.35%), Query Frame = 3 
Query:  129 MVYFVCESCNETLKKAQVDRHLYSCKSCWGVTCVDCNFTFEGDSFRAHTSCVSEDQKYQGALFKAPK-----AKQKNRGVNEIWADSVLLAASNASSGVAPKSLCAHLVRMGDLGNVPRQEKKFKNFVKNSLRVFDETSVSKLWAYV 554
            MV+FVCE CNE+LKK QVD+H   C +CW VTCVDCN TFEGD +R HTSC+SE QKY+GAL++ PK       +K +G  EIW + V  AA  A S  AP ++ + +  +   GNVPR + KF NFVKNSLRV  E  + ++W ++
Sbjct:    1 MVFFVCEGCNESLKKNQVDKHASFCSACWAVTCVDCNVTFEGDDYRQHTSCISEAQKYEGALYRGPKKGGETGSKKKKGPQEIWMEVVEQAA--AESQQAPANIRSMISNLSGFGNVPRNQNKFCNFVKNSLRVRSEPMIKQIWEFL 145
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BLAST of mRNA_Ecto-sp8_S_contig9644.31330.1 vs. uniprot
Match: A0A835Z9A3_9STRA (zf-LYAR domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9A3_9STRA)

HSP 1 Score: 159 bits (403), Expect = 2.860e-40
Identity = 68/148 (45.95%), Postives = 108/148 (72.97%), Query Frame = 3 
Query:  129 MVYFVCESCNETLKKAQVDRHLYSC--KSCWGVTCVDCNFTFEGDSFRAHTSCVSEDQKYQGALFKAPKAKQKNRGVNEIWADSVLLAASNASSGVAPKSLCAHLVRMGDLGNVPRQEKKFKNFVKNSLRVFDETSVSKLWAYVDGVK 566
            MV+F CE CNE+LKKAQV++H+++C  ++CW VTC+DCN TF+GD +  HT+C+SE +KY+  ++K  K K   +   + W D V  AA++A++   P ++ AHL RM D GNVPRQEKKF+NF++NSL+++D  ++  +W +++ ++
Sbjct:    1 MVFFNCEGCNESLKKAQVEKHVFTCPARNCWAVTCIDCNVTFKGDDYATHTTCISEAEKYEKTVYKGNKGKPVKKNPQDAWMDLVTEAAASAAT---PPAVRAHLQRMADFGNVPRQEKKFRNFLQNSLKLWDAGAIDAIWRHLEALR 145
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BLAST of mRNA_Ecto-sp8_S_contig9644.31330.1 vs. uniprot
Match: A0A7S4DDA0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DDA0_HETAK)

HSP 1 Score: 156 bits (395), Expect = 6.550e-40
Identity = 75/155 (48.39%), Postives = 106/155 (68.39%), Query Frame = 3 
Query:  129 MVYFVCESCNETLKKAQVDRHLYSCKSCWGVTCVDCNFTFEGDSFRAHTSCVSEDQKYQGALFKAPKAKQKNRGVNEIWADSVLLAASNASSGVAPKSLCAHLVRMGDLGNVPRQEKKFKNFVKNSLRVFDETSVSKLWAYVDGVKNDLTAKEKE 593
            MV+FVC+ CNETLK+ QVD H   C SC+ VTCVDCN +F  + ++ H +C+SE +KYQG L++APK K   +   E W + V+    N+++  AP  L ++L RM DLGNVPRQ KKF NFVKNSL +  +  V++LW ++DG++    AK++E
Sbjct:    1 MVFFVCDGCNETLKRNQVDTHAGRCHSCYAVTCVDCNVSFPDNDYKQHMTCISEAEKYQGNLYQAPKKKAGKQNPQEAWMELVV----NSANQPAPAGLKSYLQRMADLGNVPRQRKKFGNFVKNSLALRSDAVVAQLWDHLDGLRE--AAKQRE 149
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BLAST of mRNA_Ecto-sp8_S_contig9644.31330.1 vs. uniprot
Match: W7TWJ6_9STRA (Zinc finger, C2H2, LYAR-type n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TWJ6_9STRA)

HSP 1 Score: 140 bits (354), Expect = 1.160e-34
Identity = 74/151 (49.01%), Postives = 96/151 (63.58%), Query Frame = 3 
Query:  129 MVYFVCESCNETLKKAQVDRHLYSCK-SCWGVTCVDCNFTFEGDSFRAHTSCVSEDQKYQGALFKAPKA-----KQKNRGVNEIWADSVL-LAASNASSGVAPKSLCAHLVRMGDLGNVPRQEKKFKNFVKNSLRVFDETSVSKLWAYVDG 560
            MV+F CE CNETLKKAQV+ HL     S + V+CVDC+  F G S++AHTSC+SE +KY+ +L+K PKA     K K R   E W + +  +A  N+ +G     L  HL RM +LGNVPR EKKFKNF+ NSLR+       +LW Y+ G
Sbjct:    1 MVFFSCEGCNETLKKAQVESHLRRALCSRYPVSCVDCSQVFPGSSYQAHTSCISEAEKYEKSLYKGPKAGNKGGKGKKRNPQEEWMEMIASVACDNSETGGVNSILRRHLSRMAELGNVPRNEKKFKNFLNNSLRINRSNEQDELWKYLKG 151
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BLAST of mRNA_Ecto-sp8_S_contig9644.31330.1 vs. uniprot
Match: A0A7S3HA97_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HA97_9STRA)

HSP 1 Score: 139 bits (351), Expect = 1.580e-34
Identity = 71/167 (42.51%), Postives = 101/167 (60.48%), Query Frame = 3 
Query:  129 MVYFVCESCNETLKKAQVDRHLYSCKSCWGVTCVDCNFTFEGDSFRAHTSCVSEDQKYQGALFKAPKAKQKNRGVNEIWADSVLLAASNASSGVAPKSLCAHLVRMGDLGNVPRQEKKFKNFVKNSLRVFDETSVSKLWAYVDGVKNDLTAKEKEATATPAAVAVTQ 629
            MV+FVCE CNET+KK QVD+H   C+SC  VTCVDC+ TF G+ +  H +CVSE +KY+  L+KA   K     +N  +A +  +  + + +  AP  +  +L R+G+L NVPR +KKF NF KNSLR++ +  +  LW Y+D  +     KE    A P   AV +
Sbjct:    1 MVFFVCEGCNETVKKNQVDKHASRCRSCHAVTCVDCSVTFYGNDYAEHITCVSEAEKYEKTLYKAKAVK-----LNPQYAWNAQIETATSKAETAPAIVRPYLQRLGELNNVPRNKKKFINFAKNSLRLYSDNVLEALWNYLDTYRVLPATKEAPQKAEPVVEAVVE 162
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BLAST of mRNA_Ecto-sp8_S_contig9644.31330.1 vs. uniprot
Match: A0A8K1FM11_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FM11_PYTOL)

HSP 1 Score: 137 bits (346), Expect = 1.910e-33
Identity = 76/160 (47.50%), Postives = 99/160 (61.88%), Query Frame = 3 
Query:  129 MVYFVCESCNETLKKAQVDRHLYSCKSCWGVTCVDCNFTFEGDSFRAHTSCVSEDQKYQGALFKAPKAKQKNRGVNEIWADSVLLAASNASSGVAPKSLCAHLVRMGDLGNVPRQEKKFKNFVKNSLRVFDETSVSKLW-AYVDGVKNDLTAKEKEATAT 605
            MV+FVCE CNETLKK +VD H   C++CW V+CVDC+  FEG+ + AHTSC+SE QKY+G+L+   KAK K     E W D V     NA++G   K L + L R+    NVPR++ KF NF+KNS+   D   + K+W  + D  K    A E EA AT
Sbjct:    1 MVFFVCEGCNETLKKNKVDAHAARCRNCWAVSCVDCSVVFEGNDYAAHTSCISEAQKYEGSLY---KAKSKKMSPQERWMDVV----QNATAG-NDKKLQSVLSRVAGYDNVPRKKAKFVNFMKNSIGGGDMAIIEKVWNVFEDAYK----ASEAEANAT 148
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BLAST of mRNA_Ecto-sp8_S_contig9644.31330.1 vs. uniprot
Match: A0A485KW80_9STRA (Aste57867_12667 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KW80_9STRA)

HSP 1 Score: 137 bits (345), Expect = 3.490e-33
Identity = 76/164 (46.34%), Postives = 101/164 (61.59%), Query Frame = 3 
Query:  129 MVYFVCESCNETLKKAQVDRHLYSCKSCWGVTCVDCNFTFEGDSFRAHTSCVSEDQKYQGALFKAPK-AKQKNRGVNEIWADSVLLAASNASSGVAPKSLCAH-LVRMGDLGNVPRQEKKFKNFVKNSLRVFDETSVS-KLWAYVDGVKNDLTAKEKEATATPA 611
            MV+FVCE CNETLKK +VD H   C++CW VTCVDC   F+G+ + AHT+C+SE QKY+GAL++ PK AKQ  +   E W D +        S  AP++     L R+    NVPR++ KF NF++NS+ V   T V  KLW +++   N L    KE TA PA
Sbjct:    1 MVFFVCEGCNETLKKNKVDAHAARCRNCWAVTCVDCQVVFKGNDYAAHTTCISEAQKYEGALYQGPKGAKQAKKNPQERWMDLI-------QSSTAPEAKVNQALQRIAGYDNVPRKKPKFLNFLRNSIGV---TGVEEKLWTFLETEFNKL----KETTAEPA 150
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BLAST of mRNA_Ecto-sp8_S_contig9644.31330.1 vs. uniprot
Match: A0A024U567_9STRA (zf-LYAR domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U567_9STRA)

HSP 1 Score: 135 bits (341), Expect = 1.540e-32
Identity = 75/160 (46.88%), Postives = 102/160 (63.75%), Query Frame = 3 
Query:  129 MVYFVCESCNETLKKAQVDRHLYSCKSCWGVTCVDCNFTFEGDSFRAHTSCVSEDQKYQGALFKAPKA-KQKNRGVNEIWADSVLLAASNASSGVAPKSLCAHLVRMGDLGNVPRQEKKFKNFVKNSLRVFDETSVS-KLWAYVDGVKNDLTAKEKEATA 602
            MV+FVCE CNETLKK +VD H   C++CW VTCVDC   F+G+ + AHT+C+SE QKY+GAL++APKA KQ  +   E W D  L+ +S A      ++L     R+    NVPR++ KF NF+KNS+ +   T V  KLW +++   N L  K+ EA A
Sbjct:    1 MVFFVCEGCNETLKKNKVDAHASRCRNCWAVTCVDCQVVFKGNDYAAHTTCISEAQKYEGALYQAPKASKQAKKNPQERWMD--LIQSSTAPDAKVNQAL----QRIAGYDNVPRKKPKFFNFLKNSIGI---TGVEDKLWTFLETEFNKL--KDTEAAA 149
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9644.31330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G289_ECTSI1.720e-18492.51zf-LYAR domain-containing protein n=2 Tax=Ectocarp... [more]
A0A7R9UG70_9STRA2.840e-4248.52Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2SQW7_9STRA4.060e-4151.70Hypothetical protein (Fragment) n=2 Tax=Rhizochrom... [more]
A0A835Z9A3_9STRA2.860e-4045.95zf-LYAR domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S4DDA0_HETAK6.550e-4048.39Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7TWJ6_9STRA1.160e-3449.01Zinc finger, C2H2, LYAR-type n=1 Tax=Nannochlorops... [more]
A0A7S3HA97_9STRA1.580e-3442.51Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A8K1FM11_PYTOL1.910e-3347.50Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A485KW80_9STRA3.490e-3346.34Aste57867_12667 protein n=1 Tax=Aphanomyces stella... [more]
A0A024U567_9STRA1.540e-3246.88zf-LYAR domain-containing protein n=2 Tax=Aphanomy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9644contigEcto-sp8_S_contig9644:2032..6327 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score463.0
Seed ortholog evalue1.2e-127
Seed eggNOG ortholog2880.D7G289
Preferred nameLYAR
Model size1640
KEGG koko:K14785,ko:K15263
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0001750,GO:0002262,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005929,GO:0006139,GO:0006355,GO:0006357,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0022613,GO:0030097,GO:0030099,GO:0030100,GO:0030154,GO:0030218,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032879,GO:0034101,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042592,GO:0042995,GO:0043005,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044441,GO:0044446,GO:0044463,GO:0044464,GO:0045807,GO:0045892,GO:0045934,GO:0046483,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0050764,GO:0050766,GO:0050789,GO:0050794,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0060627,GO:0061515,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097458,GO:0097730,GO:0097731,GO:0097733,GO:0120025,GO:0120038,GO:1901360,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Exons7
EggNOG free text desc.erythrocyte development
EggNOG OGsKOG2186@1,KOG2186@2759
Ec32 ortholog descriptionZinc finger, C2H2, LYAR-type
Ec32 orthologEc-16_002050.1
Cds size1038
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9644.31330.1prot_Ecto-sp8_S_contig9644.31330.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9644 2506..6199 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145328.4502425-UTR-Ecto-sp8_S_contig9644:2031..25051681145328.4502425-UTR-Ecto-sp8_S_contig9644:2031..2505Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9644 2032..2505 -
1681145328.5454814-UTR-Ecto-sp8_S_contig9644:6199..63271681145328.5454814-UTR-Ecto-sp8_S_contig9644:6199..6327Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9644 6200..6327 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145328.4671721-CDS-Ecto-sp8_S_contig9644:2505..27211681145328.4671721-CDS-Ecto-sp8_S_contig9644:2505..2721Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9644 2506..2721 -
1681145328.4789083-CDS-Ecto-sp8_S_contig9644:3272..35171681145328.4789083-CDS-Ecto-sp8_S_contig9644:3272..3517Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9644 3273..3517 -
1681145328.4901721-CDS-Ecto-sp8_S_contig9644:4048..42651681145328.4901721-CDS-Ecto-sp8_S_contig9644:4048..4265Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9644 4049..4265 -
1681145328.5031536-CDS-Ecto-sp8_S_contig9644:4676..48351681145328.5031536-CDS-Ecto-sp8_S_contig9644:4676..4835Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9644 4677..4835 -
1681145328.5136316-CDS-Ecto-sp8_S_contig9644:5351..54111681145328.5136316-CDS-Ecto-sp8_S_contig9644:5351..5411Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9644 5352..5411 -
1681145328.5254643-CDS-Ecto-sp8_S_contig9644:5775..58831681145328.5254643-CDS-Ecto-sp8_S_contig9644:5775..5883Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9644 5776..5883 -
1681145328.5355685-CDS-Ecto-sp8_S_contig9644:6166..61991681145328.5355685-CDS-Ecto-sp8_S_contig9644:6166..6199Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9644 6167..6199 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9644.31330.1

>prot_Ecto-sp8_S_contig9644.31330.1 ID=prot_Ecto-sp8_S_contig9644.31330.1|Name=mRNA_Ecto-sp8_S_contig9644.31330.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=346bp
MVYFVCESCNETLKKAQVDRHLYSCKSCWGVTCVDCNFTFEGDSFRAHTS
CVSEDQKYQGALFKAPKAKQKNRGVNEIWADSVLLAASNASSGVAPKSLC
AHLVRMGDLGNVPRQEKKFKNFVKNSLRVFDETSVSKLWAYVDGVKNDLT
AKEKEATATPAAVAVTQVSAAAEEPKEETAATIEPARKSSKKEKKSKKRA
REEAADTGNGGTADGSDNGSGGGEKRPRGKQSEEEKQPQEAAAGEEAEGA
RNGGGVDAATRKALAKAAIGAVKKAQDKKIAVKELVKQAAAAVLVARGTE
GSSSGSSKEHQPDDQTLRRALKQRLKTGGLRHVTVEGKVAVYSKG*
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mRNA from alignment at Ecto-sp8_S_contig9644:2032..6327-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9644.31330.1 ID=mRNA_Ecto-sp8_S_contig9644.31330.1|Name=mRNA_Ecto-sp8_S_contig9644.31330.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4296bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9644:2032..6327- (Ectocarpus species8 EcLAC_412)
GCTGTCCGTCCGCACAAGCATCGGGCTCCTCTCTTCTACCGCAGTGGACA
AGTCTCTGGCCCCTTCCGCTGCCACGACTGATAATTCTTCCACCGCCTCT
TCTCAGGGCCGAGCTTCTCGCGGACGAGATGGTGTACTTTGTGTGCGAGT
CGTGCAATGAGGTGTGTGTGTGTGTGGCGAGGAAGGTCCGGTACACAGCA
GGACAACGAGGGCGGCAGCGAGAGGAGCTCCTTGTTTCGCAGCCTGCCGC
GCGTGAACACTCAAGCTGACTTATCTGGTGTCCTTGAGACGTGCCTTCAT
GGTATGGTTGGTTATCCGAGTTGGATATGATGTGCTGTGTACATGTAAAT
AGTCGTCCAGAAAACTCAGGTTGCTGGTCCGCTTCCCTGCCCTCTCCGTT
CTGCATATCCTCGGCAACCTTGGCGTTGTATGTACATACCTCAGACGCTG
AAAAAGGCACAGGTCGACAGGCACCTCTACTCGTGCAAGAGCTGCTGGGG
CGTGACTTGCGTGGACTGCAACTTCACCTTCGAAGGCGATTCGTTCAGGG
CGGTAAGGGCCGCGTGGGGGAAGGGGGGTGAGGGCGAAACACAGAACGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGACGCGTCAGGTTAGCGTTGTAG
CTATTATAGTTAGTGCAAGAGGGTCCTCATGGGGAAATGGTCGGTGCATG
GACAGACAGATACCCAACTGCCTGCACTCTTCTAGACAAAAAAATTCGTC
CATATCCTTAAGGCGATGAGTACGCAGCCTGAGAGGCTCCCTGTTGGTCC
GGGAGAAAGCAGAGTCTGCCGTACGTGATTCATCTTGTGTCCCCCTGTCC
GCCGTGCGTGCAACAATCTTGGTCCCGATAACTACTGACTGCTGCGCTCT
CGCTGTCCTTTTGCAGCACACTTCTTGCGTGTCCGAGGACCAGAAGTACC
AAGGCGCTTTGTTCAAGGCTCCAAAGGTGCGAAACGCAAAAACCCATCCG
ATACGTATGTATGTCATTACAATTCCACAGCATCACCGCAGACTGACCTA
CCGCATGTGTGTGAAGGTGGCTCCACGTCTCGCGGGTATTCACGCGCTAC
CTCAGCGTATATTCCCACCGCCTACTGGGAACAATCGCATGCCAATTTAG
CCCGGGCGGTATATTTGGTACATCGATACACGAGACAGGGCACAAGGAAT
AGTCAGCGCTGTGTGGTGTGGGCGTGTAATGGCGATTGGGTGTGTTTGCC
TCACCGGGGCGAAAGACAGCATTCGCACCCGCAACCAACCGCATGCTCTT
ACGACGCCCATTCGCGTGCTTCCAAAGTAGTAGTGGTACTCGTTTGCCCT
TCGCAAGCCATCGAACTGAAGACGAGGGAGACCCGGGTGCACTGCTGTGT
TTTCTGCCATGCTGGGCCCACTTCCTCACTCTACTTCGCTACCCCCCCCC
CACCACCCCGGGTGCATGCACACGTGTGCCGACGTTGACCAGGCCAAGCA
GAAGAATCGCGGAGTGAACGAGATCTGGGCCGATTCTGTCCTGCTTGCCG
CGAGCAACGCCTCTTCCGGTGTTGCTCCCAAATCGCTGTGCGCCCACCTG
GTTCGCATGGGAGACCTCGGCAACGTGCCGCGCCAGGAGAAGAAGTTCAA
GGTGCGGAAGGACAACAGCAGCGGCGGTAGGAGCCATGAAAAATTCGCGG
GCGCTAAAAAGCCTTTTTGTAAACAGTCCGCAGTATTCCGCGTGTGCACA
CGCATGGATGATAATAATCACGCGGGCTTCATTGTACGCATGTGTGCGTC
AGCGGATGTTTACGTGTGACGCGTCCGCGGATGTTTACGTGTGAAAGTGT
CGTATAGCATTTTGTGTTTCTTTTTATAGGCATCGATCGCGGTAACCGGC
TGACCCGTAGAAAATTCGTCAGTCTTGCGTGTGCGTGTGATGTTCAACCT
CTAGCGCTCGGTGTGTGTGTGTACACAGGTTGCACTTGGCCGCTTGGAAA
TTTTTTCTTGACAAGTGCTTGCTGTGCGGATGCGTTTTTTTTCTATGGTC
CTGAGGAAACAGAACTTCGTGAAGAACAGCCTACGTGTGTTCGACGAGAC
CAGCGTCTCCAAGCTGTGGGCCTACGTGGACGGCGTCAAGAACGACTTGA
CGGCGAAAGAGAAGGAGGCGACGGCGACGCCGGCAGCGGTGGCCGTGACC
CAAGTATCGGCTGCGGCCGAAGAGCCTAAGGAGGAGACAGCCGCGACAAT
AGAGCCCGCGCGAAAATCGTCCAAGAAAGGTGTGTGTTGCTTGACGAGGA
CAGCAACGGTTGTTGTGCAATATGCGGGCCGGCAGAAACGTTTGTGTAGA
GGAGGAGCAGGAGCAGACTCTTTCTGTAGGGCATTTTTGTGGGACGGGGG
TGGGGGTTACGGTTCACATAAAAACCTCCGGGAAAGTCGCAAGAATCTTG
TGTTTTGGCGTGTAGTAGGGTATAGAGTACAAGGCGGTACGCTGGTGGTT
GTGGGAGAAACATGTACCATCACCATTTTTGTTGTGTAGACTTTGTTGGA
AACACCAGCGTATTTCGACAACACCAATACCTTTATTCCCCAAGGATTTT
GATATCGATCCCGCAGAATCCACAACTCTCATGCCGATGGCACCCCGCCC
AATCTTCAAGCGTGCAATTATCACGGACCAGCCTTACGCCGCGCGTAAGT
GGTGCGAACTCGTGCCGACAACCTGTGTGCGTTTGCACCCAACCTCCCTC
CCCCCCTGCCTCCCTCCTCTTTCTCTTCCTGCACGCGCGACCGTATCACC
ATCGCCACAGAGAAAAAGAGCAAAAAGCGAGCGAGAGAAGAGGCGGCGGA
TACGGGGAACGGGGGGACTGCAGACGGCAGCGATAACGGTAGCGGTGGCG
GTGAAAAGAGACCGCGAGGAAAGCAGTCAGAAGAGGAGAAGCAGCCGCAA
GAGGCGGCGGCCGGCGAAGAAGCCGAGGGTGCGAGAAACGGTGGTGGGGT
AGATGCGGCCACTCGCAAGGCGTTAGCCAAGGCGGCCATCGGCGCTGTGA
AGAAGGTGGGCGAGGGGTGATAATGCCACACGAAGGGCAGTCGGCTGTGC
TCCTCTATAGGTGTTTTGGGTCACACAAGTGTTTTGATCTAGCCAAGCGC
CCAAAACTAAAGCGTCATGTCACGAGACACACAGCGGGTGCATGACGGCA
GAGCAGCAAAGCCACCCACAAACCTCAACACGCTCAGATAACCAAGGCGC
ACACCGTGTACCTACCCATCGTGTCCCGAATCTTGGCTTGAGTTCATCAA
TGTTTGCCGCCAGCAGCAAGTTGGTCGGCAGCAAGGACATCGCTACCGTG
TTGAAATTCGTCACGATCGTACCTCTCTTCTCTGCAGCCAGTATTGATTG
CTGGGTGGGTGTAAACGACGTCTCTACACGTGGGTGCGTTAAGTACGACG
GTTTGACAAACTGCGGGTTGCTTGTAGTATTGTGAATAGTTGCGCCCCGA
TTGGCCAGCCTTCCTCCTTGTTGCCGTTTTTTTTCCGCTTGGTGTCTTCA
TGTTTTTTTATTCCCAACCCTCTCTACCTCAACTGTTCTGTCTCAATTTC
CATCAGGCTCAGGACAAGAAGATAGCGGTGAAGGAACTTGTCAAGCAGGC
GGCGGCGGCGGTGTTGGTGGCAAGAGGCACGGAGGGCAGCAGCAGCGGCA
GCAGCAAGGAGCACCAACCGGACGACCAGACGCTGAGGCGTGCCCTGAAG
CAGCGGTTAAAGACCGGGGGGCTCCGCCACGTGACGGTGGAAGGGAAGGT
GGCCGTCTACTCCAAGGGATAGGGTTAAGCCCAAAAGTTTTTGCCGTTGT
TCATAGTCAAGGATTGCGGTGAAGGGTGTGGTCCCGGGCAGATATTGCGC
GGGGGGGTCTTTATCTTCGGCAGGAGTAGAGTCGGGTATCGTAGGTCTTG
GCTACGGCAGAAACCAACAGAGAGGGAGAGAAGAAAATGCGAGCACCGCT
CCGGCCGCAAGCAGCGATCGCCCCGGAAACGATGCGGGCGCGTGTGCTTT
CGGAGGTCTGCCTAGTAGTATACCCGCCTGCTGGCGTTAACATCTATCTT
GGCTTCTGTATCGGAAGACGGAGCTCCATGTGTTACCCGAAATAAATGCT
CTTAGTCGCTGATGTTGTGGCATCACAGTACCCGAAAGGATGAGCCATCG
ACCGAGTAGCAACAGCATCGACCGAAGTTCCGGCGGCGTTCCATGAAGAG
CGGCGTAAGTCTTAGCTTGCGTCGCGTGTGTATTCTTATCTGTGGT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9644:2032..6327-

>mRNA_Ecto-sp8_S_contig9644.31330.1 ID=mRNA_Ecto-sp8_S_contig9644.31330.1|Name=mRNA_Ecto-sp8_S_contig9644.31330.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1038bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9644:2032..6327- (Ectocarpus species8 EcLAC_412)
ATGGTGTACTTTGTGTGCGAGTCGTGCAATGAGACGCTGAAAAAGGCACA
GGTCGACAGGCACCTCTACTCGTGCAAGAGCTGCTGGGGCGTGACTTGCG
TGGACTGCAACTTCACCTTCGAAGGCGATTCGTTCAGGGCGCACACTTCT
TGCGTGTCCGAGGACCAGAAGTACCAAGGCGCTTTGTTCAAGGCTCCAAA
GGCCAAGCAGAAGAATCGCGGAGTGAACGAGATCTGGGCCGATTCTGTCC
TGCTTGCCGCGAGCAACGCCTCTTCCGGTGTTGCTCCCAAATCGCTGTGC
GCCCACCTGGTTCGCATGGGAGACCTCGGCAACGTGCCGCGCCAGGAGAA
GAAGTTCAAGAACTTCGTGAAGAACAGCCTACGTGTGTTCGACGAGACCA
GCGTCTCCAAGCTGTGGGCCTACGTGGACGGCGTCAAGAACGACTTGACG
GCGAAAGAGAAGGAGGCGACGGCGACGCCGGCAGCGGTGGCCGTGACCCA
AGTATCGGCTGCGGCCGAAGAGCCTAAGGAGGAGACAGCCGCGACAATAG
AGCCCGCGCGAAAATCGTCCAAGAAAGAGAAAAAGAGCAAAAAGCGAGCG
AGAGAAGAGGCGGCGGATACGGGGAACGGGGGGACTGCAGACGGCAGCGA
TAACGGTAGCGGTGGCGGTGAAAAGAGACCGCGAGGAAAGCAGTCAGAAG
AGGAGAAGCAGCCGCAAGAGGCGGCGGCCGGCGAAGAAGCCGAGGGTGCG
AGAAACGGTGGTGGGGTAGATGCGGCCACTCGCAAGGCGTTAGCCAAGGC
GGCCATCGGCGCTGTGAAGAAGGCTCAGGACAAGAAGATAGCGGTGAAGG
AACTTGTCAAGCAGGCGGCGGCGGCGGTGTTGGTGGCAAGAGGCACGGAG
GGCAGCAGCAGCGGCAGCAGCAAGGAGCACCAACCGGACGACCAGACGCT
GAGGCGTGCCCTGAAGCAGCGGTTAAAGACCGGGGGGCTCCGCCACGTGA
CGGTGGAAGGGAAGGTGGCCGTCTACTCCAAGGGATAG
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