mRNA_Ecto-sp8_S_contig96430.31329.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig96430.31329.1
Unique NamemRNA_Ecto-sp8_S_contig96430.31329.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig96430.31329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig96430contigEcto-sp8_S_contig96430:2..205 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size204
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-21_001240.1
Cds size204
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145328.4058952-CDS-Ecto-sp8_S_contig96430:1..2051681145328.4058952-CDS-Ecto-sp8_S_contig96430:1..205Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig96430 2..205 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig96430.31329.1prot_Ecto-sp8_S_contig96430.31329.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig96430 2..205 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig96430.31329.1

>prot_Ecto-sp8_S_contig96430.31329.1 ID=prot_Ecto-sp8_S_contig96430.31329.1|Name=mRNA_Ecto-sp8_S_contig96430.31329.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=68bp
QVVSKDRWARTHQGIARPPEADIKGATDKSRLTYPEFLDALMVLGERMYQ
TATPKRSGPNPSAGRGST
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mRNA from alignment at Ecto-sp8_S_contig96430:2..205-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig96430.31329.1 ID=mRNA_Ecto-sp8_S_contig96430.31329.1|Name=mRNA_Ecto-sp8_S_contig96430.31329.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=204bp|location=Sequence derived from alignment at Ecto-sp8_S_contig96430:2..205- (Ectocarpus species8 EcLAC_412)
CAGGTGGTGTCGAAAGACCGTTGGGCTCGAACGCACCAAGGCATTGCCCG
CCCACCCGAAGCAGATATCAAGGGTGCCACCGACAAGAGCAGGCTTACCT
ATCCGGAGTTTCTAGACGCCCTTATGGTTTTAGGCGAACGCATGTATCAA
ACAGCGACTCCCAAGCGATCAGGACCAAATCCCTCCGCGGGTAGAGGTTC
AACG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig96430:2..205-

>mRNA_Ecto-sp8_S_contig96430.31329.1 ID=mRNA_Ecto-sp8_S_contig96430.31329.1|Name=mRNA_Ecto-sp8_S_contig96430.31329.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=204bp|location=Sequence derived from alignment at Ecto-sp8_S_contig96430:2..205- (Ectocarpus species8 EcLAC_412)
CAGGTGGTGTCGAAAGACCGTTGGGCTCGAACGCACCAAGGCATTGCCCG
CCCACCCGAAGCAGATATCAAGGGTGCCACCGACAAGAGCAGGCTTACCT
ATCCGGAGTTTCTAGACGCCCTTATGGTTTTAGGCGAACGCATGTATCAA
ACAGCGACTCCCAAGCGATCAGGACCAAATCCCTCCGCGGGTAGAGGTTC
AACG
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