mRNA_Ecto-sp8_S_contig964.31323.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig964.31323.1
Unique NamemRNA_Ecto-sp8_S_contig964.31323.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig964.31323.1 vs. uniprot
Match: D8LU74_ECTSI (NUDIX hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU74_ECTSI)

HSP 1 Score: 605 bits (1559), Expect = 3.950e-215
Identity = 302/316 (95.57%), Postives = 309/316 (97.78%), Query Frame = 2 
Query:  128 MISSARASALLIGRRVHVAAKRLRTSTAAAARPSPSFEYKVQSTDDPKPRKTCTTCGFVNYENPKVICGSVLTAKGGADGKDDFYVLGRRSIQPRQGFWGIPAGFLELGETGEEGAAREAREEMNTDVDVGGLLAVYSLPHIGQIQMIYSSELKDTKGANDALANNAHSFSAGQETDEVFGVRWEDMPWDTLAFPTTSWALWHHRLRVEEAATRSIIGSSSGAPLGTGESTRRGFSGGDTAVSAGAKAVVDDDRVVSTRADHSEPGVSDTMGTGVGVAFGAIAGTVFSVPSVDSSLFWHPDVGLHQKEGWNVSTDS 1075
            MISSAR+SA+LIGRRV VAAKRLRTSTAAAARPSPSFEYKVQSTDDPKPRKTCTTCGFVNYENPKVICGSVLTAKGGADGKDDFYVLGRRSIQPR+GFWGIPAGFLELGETGEEGAAREAREEMN DVDVGGLLAVYSLPHIGQIQMIYSSELKDT+GAND LA+NAHSFSAGQETDEVFGVRWED+PWDTLAFPTTSWALWHHRLRVEEAATRSIIGSSSGAPLGTGE TRRGFSGGDTAVSAGAKAVVDDDRVV TR DHSEPGVSDTMGTGVGVAFGAIAGTVFSVPSV+SSLFW PDVGLHQKEGWNVSTDS
Sbjct:    1 MISSARSSAVLIGRRVQVAAKRLRTSTAAAARPSPSFEYKVQSTDDPKPRKTCTTCGFVNYENPKVICGSVLTAKGGADGKDDFYVLGRRSIQPRRGFWGIPAGFLELGETGEEGAAREAREEMNADVDVGGLLAVYSLPHIGQIQMIYSSELKDTQGANDTLADNAHSFSAGQETDEVFGVRWEDIPWDTLAFPTTSWALWHHRLRVEEAATRSIIGSSSGAPLGTGEGTRRGFSGGDTAVSAGAKAVVDDDRVVGTRTDHSEPGVSDTMGTGVGVAFGAIAGTVFSVPSVNSSLFWRPDVGLHQKEGWNVSTDS 316
[Close]
BLAST of mRNA_Ecto-sp8_S_contig964.31323.1 vs. uniprot
Match: A0A6H5JUS4_9PHAE (Nudix hydrolase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS4_9PHAE)

HSP 1 Score: 460 bits (1184), Expect = 6.960e-159
Identity = 229/258 (88.76%), Postives = 239/258 (92.64%), Query Frame = 2 
Query:  311 ENPKVICGSVLTAKGGADGKDDFYVLGRRSIQPRQGFWGIPAGFLELGETGEEGAAREAREEMNTDVDVGGLLAVYSLPHIGQIQMIYSSELKDTKGANDALANNAHSFSAGQETDE---VFGVRWEDMPWDTLAFPTTSWALWHHRLRVEEAATRSIIGSSSGAPLGTGESTRRGFSGGDTAVSAGAKAVVDDDRVVSTRADHSEPGVSDTMGTGVGVAFGAIAGTVFSVPSVDSSLFWHPDVGLHQKEGWNVSTDS 1075
            ENPKVICGSVLTAKGGADG DDFYVLGRRSIQPR+G WGIPAGFLELGETGEEGAAREAREEMN DVDVGGLLAVYSLPHIGQIQM+YSSEL+DT+GAND LANNAHSFSAGQETDE   V  VRWED+PWDTLAFPTTSWALWHHRLRVEEAATRS IGSSSGAPLGTGE  +RGFSGGDTA+SA AKAV DDDRVV T+ DH EPGVSDT+GTGVGVAFGAIAGTVFSVPSV+SSLFW PDVGLHQKEGWN STDS
Sbjct:   12 ENPKVICGSVLTAKGGADGTDDFYVLGRRSIQPRRGLWGIPAGFLELGETGEEGAAREAREEMNADVDVGGLLAVYSLPHIGQIQMMYSSELRDTQGANDILANNAHSFSAGQETDEASAVISVRWEDIPWDTLAFPTTSWALWHHRLRVEEAATRSTIGSSSGAPLGTGEGRKRGFSGGDTAISAVAKAVGDDDRVVGTKTDHCEPGVSDTIGTGVGVAFGAIAGTVFSVPSVNSSLFWRPDVGLHQKEGWNASTDS 269
[Close]
BLAST of mRNA_Ecto-sp8_S_contig964.31323.1 vs. uniprot
Match: A0A7Y3RKT5_9PROT (NUDIX hydrolase n=1 Tax=Parvularcula mediterranea TaxID=2732508 RepID=A0A7Y3RKT5_9PROT)

HSP 1 Score: 165 bits (418), Expect = 3.980e-45
Identity = 81/171 (47.37%), Postives = 116/171 (67.84%), Query Frame = 2 
Query:  230 PSFEYKVQSTDDPKPRKTCTTCGFVNYENPKVICGSVLTAKGGADGKDDFYVLGRRSIQPRQGFWGIPAGFLELGETGEEGAAREAREEMNTDVDVGGLLAVYSLPHIGQIQMIYSSELKDTKGANDALANNAHSFSAGQETDEVFGVRWEDMPWDTLAFPTTSWALWHHR 742
            PSF+ +V   DD + RK CT CGF++Y+NPK++CGSV T+  G        +L +R+I+PR+GFW +PAG++ELGE+ E+GA REAREE   ++ +  +LAVYS+P IGQ+Q+++ +EL + +G             AG E+++V  V WED+PW  LAFPT  WAL HHR
Sbjct:    9 PSFQKEVPDGDD-RERKVCTRCGFIDYQNPKIVCGSVATSPDGR------ILLCKRAIEPRKGFWTLPAGYMELGESVEDGARREAREEALAELKLDRILAVYSIPRIGQVQIMFRAELLNPEGVG-----------AGPESEDVKLVTWEDIPWTELAFPTVYWALRHHR 161
[Close]
BLAST of mRNA_Ecto-sp8_S_contig964.31323.1 vs. uniprot
Match: A0A6L9MI79_9HYPH (NUDIX domain-containing protein n=2 Tax=Aurantimonas TaxID=182269 RepID=A0A6L9MI79_9HYPH)

HSP 1 Score: 160 bits (406), Expect = 2.870e-43
Identity = 91/189 (48.15%), Postives = 112/189 (59.26%), Query Frame = 2 
Query:  230 PSFEYKVQSTDDPKPRKTCTTCGFVNYENPKVICGSVLTAKGGADGKDDFYVLGRRSIQPRQGFWGIPAGFLELGETGEEGAAREAREEMNTDVDVGGLLAVYSLPHIGQIQMIYSSELKDTKGANDALANNAHSFSAGQETDEVFGVRWEDMPWDTLAFPTTSWALWHHRLRVEEAATRSIIGSSSGA 796
            PSF  ++   DD  PRK C  CGFV YENPK++ GSV+  +G         +L RR+I+PR GFW IPAG+LEL ET EEGA REAREE    + +  LLAVYS+P I Q+Q+IY + L                FSAG E+ EV    W+D+PWD LAFPT  WAL H R   E  AT    G+ +GA
Sbjct:    4 PSFSLRLPEGDD-LPRKVCDNCGFVAYENPKIVVGSVVRHEG-------RILLCRRAIEPRSGFWTIPAGYLELNETPEEGARREAREEATATLAIERLLAVYSVPRISQVQLIYRARLA------------VPEFSAGPESLEVALFDWDDIPWDDLAFPTVHWALAHDR-EAETGATTVPFGNPAGA 171
[Close]
BLAST of mRNA_Ecto-sp8_S_contig964.31323.1 vs. uniprot
Match: A0A2N3EBT8_9PROT (NUDIX hydrolase n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-11 TaxID=2013657 RepID=A0A2N3EBT8_9PROT)

HSP 1 Score: 157 bits (398), Expect = 5.490e-42
Identity = 81/172 (47.09%), Postives = 112/172 (65.12%), Query Frame = 2 
Query:  230 PSFEYKVQSTDDPKPRKTCTTCGFVNYENPKVICGSVLTAKGGADGKDDFYVLGRRSIQPRQGFWGIPAGFLELGETGEEGAAREAREEMNTDVDVGGLLAVYSLPHIGQIQMIYSSELKDTKGANDALANNAHSFSAGQETDEVFGVRWEDMPWDTLAFPTTSWALWHHRL 745
            P+F  +V  T D  PR  C  CGF++Y NPKV+ GSV++ +G         ++ RR+I+PR+GFW +PAGF+E GET EEGA REAREE N ++ +  LLAVYS+P I Q+Q++Y +EL D             SFSAG+E+ EV    W+++PW+ LAFP+  WAL  +RL
Sbjct:   19 PAFSRRVP-TGDNLPRDICDRCGFIHYVNPKVVVGSVVSFEG-------RILMCRRAIEPRKGFWTLPAGFMEQGETAEEGARREAREEANAEIVLKDLLAVYSIPRIAQVQLMYRAELADP------------SFSAGEESLEVALFSWDEIPWEALAFPSVHWALTQYRL 170
[Close]
BLAST of mRNA_Ecto-sp8_S_contig964.31323.1 vs. uniprot
Match: K9H0G8_9PROT (FAD pyrophosphatase n=1 Tax=Caenispirillum salinarum AK4 TaxID=1238182 RepID=K9H0G8_9PROT)

HSP 1 Score: 155 bits (392), Expect = 2.600e-41
Identity = 81/165 (49.09%), Postives = 101/165 (61.21%), Query Frame = 2 
Query:  263 DPKPRKTCTTCGFVNYENPKVICGSVLTAKGGADGKDDFYVLGRRSIQPRQGFWGIPAGFLELGETGEEGAAREAREEMNTDVDVGGLLAVYSLPHIGQIQMIYSSELKDTKGANDALANNAHSFSAGQETDEVFGVRWEDMPWDTLAFPTTSWALW-HHRLRVE 754
            D +PR  C  CGF+NYENPK+I G+V+T         D Y+L RR+I+PR+GFW IPAGF+EL E+ E GAARE  EE   +V+VG LL VYSL HI Q+ +IY +E+                  AG E+ EV  V W D+PW  LAFP+  WAL  HHR R E
Sbjct:   20 DERPRMVCDDCGFINYENPKIIVGAVVTW-------GDKYLLARRAIEPRKGFWTIPAGFMELNESAEAGAAREVMEEAQAEVEVGALLGVYSLHHINQVHLIYRAEM------------TTPDHGAGYESQEVALVDWADIPWSELAFPSVRWALEAHHRHRGE 165
[Close]
BLAST of mRNA_Ecto-sp8_S_contig964.31323.1 vs. uniprot
Match: A0A355SZX8_9HYPH (NUDIX domain-containing protein n=3 Tax=Hyphomicrobiales TaxID=356 RepID=A0A355SZX8_9HYPH)

HSP 1 Score: 155 bits (392), Expect = 4.330e-41
Identity = 81/174 (46.55%), Postives = 111/174 (63.79%), Query Frame = 2 
Query:  224 PSPS-FEYKVQSTDDPKPRKTCTTCGFVNYENPKVICGSVLTAKGGADGKDDFYVLGRRSIQPRQGFWGIPAGFLELGETGEEGAAREAREEMNTDVDVGGLLAVYSLPHIGQIQMIYSSELKDTKGANDALANNAHSFSAGQETDEVFGVRWEDMPWDTLAFPTTSWALWHHR 742
            P+PS F ++V   D+  PR  C TCGF+NY NPK++ GSV+T         D ++L RR+IQPR GFW +PAGF+E GET E+GA REA EE N  +++  LLAVY++P I Q+Q++Y +EL   +            FSAG E+ EV    W+++PWD LAFP+  WAL  +R
Sbjct:   16 PAPSGFSHRVPDGDN-FPRAICDTCGFINYVNPKIVVGSVVT-------HGDAFLLCRRAIQPRHGFWTLPAGFMEEGETTEDGARREAFEEANAKIEIKDLLAVYNIPRISQVQLMYRAELPTPE------------FSAGDESLEVGLFTWDEIPWDELAFPSVHWALTQYR 169
[Close]
BLAST of mRNA_Ecto-sp8_S_contig964.31323.1 vs. uniprot
Match: UPI001F38B021 (NUDIX hydrolase n=1 Tax=Aurantimonas sp. HBX-1 TaxID=2906072 RepID=UPI001F38B021)

HSP 1 Score: 155 bits (391), Expect = 4.350e-41
Identity = 84/178 (47.19%), Postives = 106/178 (59.55%), Query Frame = 2 
Query:  227 SPSFEYKVQSTDDPKPRKTCTTCGFVNYENPKVICGSVLTAKGGADGKDDFYVLGRRSIQPRQGFWGIPAGFLELGETGEEGAAREAREEMNTDVDVGGLLAVYSLPHIGQIQMIYSSELKDTKGANDALANNAHSFSAGQETDEVFGVRWEDMPWDTLAFPTTSWALWHHRLRVEEA 760
            +PSF  +    DD  PRK C  CGFV YENPK++ GSV+         D   +L RR+I+PR+GFW IPAG+LEL ET EEGA REAREE    +D+  LLAVYS+P I Q+Q+IY + L +             S +AG E+  V    W+D+PW  LAFP+  WAL H R   E A
Sbjct:    3 TPSFSLRAPEDDD-LPRKICDNCGFVAYENPKIVVGSVVR-------HDGRILLCRRAIEPRRGFWTIPAGYLELNETPEEGARREAREEATAVLDIERLLAVYSVPRISQVQLIYRARLAEP------------SIAAGPESLSVDLFAWDDIPWQDLAFPSVHWALAHERAAAEGA 160
[Close]
BLAST of mRNA_Ecto-sp8_S_contig964.31323.1 vs. uniprot
Match: A7HSZ7_PARL1 (NUDIX hydrolase n=2 Tax=Parvibaculum lavamentivorans TaxID=256618 RepID=A7HSZ7_PARL1)

HSP 1 Score: 155 bits (393), Expect = 4.680e-41
Identity = 78/170 (45.88%), Postives = 114/170 (67.06%), Query Frame = 2 
Query:  233 SFEYKVQSTDDPKPRKTCTTCGFVNYENPKVICGSVLTAKGGADGKDDFYVLGRRSIQPRQGFWGIPAGFLELGETGEEGAAREAREEMNTDVDVGGLLAVYSLPHIGQIQMIYSSELKDTKGANDALANNAHSFSAGQETDEVFGVRWEDMPWDTLAFPTTSWALWHHR 742
            +F  +V S D+ + R  C  CGF+NY NP+++ GSV+T     DGK   ++L RR+I+PR+G+W +PAGF+E GET +EGA REAREE N ++ +  +LA+Y++P I Q+Q++Y +EL++             SFSAG+ET E     W+D+PW+ LAFP+  WAL HHR
Sbjct:   34 AFSRRVPSGDNLE-RDICDRCGFINYVNPRIVVGSVVTH----DGK---FLLCRRAIEPRRGYWTLPAGFMEQGETTDEGARREAREEANAEIVLRDVLAIYNIPRIAQVQIMYRAELREP------------SFSAGEETLEAGLFEWKDIPWEELAFPSVYWALMHHR 183
[Close]
BLAST of mRNA_Ecto-sp8_S_contig964.31323.1 vs. uniprot
Match: A0A520NSW3_9PROT (NUDIX domain-containing protein n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A520NSW3_9PROT)

HSP 1 Score: 154 bits (390), Expect = 5.070e-41
Identity = 76/160 (47.50%), Postives = 101/160 (63.12%), Query Frame = 2 
Query:  263 DPKPRKTCTTCGFVNYENPKVICGSVLTAKGGADGKDDFYVLGRRSIQPRQGFWGIPAGFLELGETGEEGAAREAREEMNTDVDVGGLLAVYSLPHIGQIQMIYSSELKDTKGANDALANNAHSFSAGQETDEVFGVRWEDMPWDTLAFPTTSWALWHHR 742
            D + R TC  CGF+NYENPK++ G+V T        D   +L RR+I PR+GFW IPAGF+EL ET E G  REA+EE   D+D+ GL+ VY++P I Q+Q+IY + +KD              F+AG ET+E+    W+D+PWD LAFP+  WAL H R
Sbjct:   19 DNRERLTCPDCGFINYENPKIVVGAVCTW-------DSRLLLCRRAIDPRRGFWTIPAGFMELNETAEAGTRREAKEEACADIDIDGLIGVYTIPRISQVQLIYRATVKDGV------------FAAGDETEELDLFGWDDIPWDDLAFPSVKWALDHWR 159
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig964.31323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU74_ECTSI3.950e-21595.57NUDIX hydrolase n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A6H5JUS4_9PHAE6.960e-15988.76Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A7Y3RKT5_9PROT3.980e-4547.37NUDIX hydrolase n=1 Tax=Parvularcula mediterranea ... [more]
A0A6L9MI79_9HYPH2.870e-4348.15NUDIX domain-containing protein n=2 Tax=Aurantimon... [more]
A0A2N3EBT8_9PROT5.490e-4247.09NUDIX hydrolase n=1 Tax=Alphaproteobacteria bacter... [more]
K9H0G8_9PROT2.600e-4149.09FAD pyrophosphatase n=1 Tax=Caenispirillum salinar... [more]
A0A355SZX8_9HYPH4.330e-4146.55NUDIX domain-containing protein n=3 Tax=Hyphomicro... [more]
UPI001F38B0214.350e-4147.19NUDIX hydrolase n=1 Tax=Aurantimonas sp. HBX-1 Tax... [more]
A7HSZ7_PARL14.680e-4145.88NUDIX hydrolase n=2 Tax=Parvibaculum lavamentivora... [more]
A0A520NSW3_9PROT5.070e-4147.50NUDIX domain-containing protein n=2 Tax=Rhodospiri... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig964contigEcto-sp8_S_contig964:2587..8343 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score605.5
Seed ortholog evalue1.4e-170
Seed eggNOG ortholog2880.D8LU74
Model size1486
KEGG rclassRC00002
KEGG koko:K18453
KEGG ReactionR00160,R01054
KEGG Pathwayko00230,ko00740,ko01100,map00230,map00740,map01100
Hectar predicted targeting categorymitochondrion
GOsGO:0000041,GO:0003674,GO:0003824,GO:0004551,GO:0005215,GO:0005385,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006829,GO:0008150,GO:0008152,GO:0008324,GO:0009314,GO:0009416,GO:0009507,GO:0009536,GO:0009605,GO:0009607,GO:0009624,GO:0009628,GO:0009987,GO:0010035,GO:0010038,GO:0010043,GO:0015075,GO:0015318,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0022857,GO:0022890,GO:0030001,GO:0032879,GO:0034220,GO:0034641,GO:0042221,GO:0042592,GO:0042726,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046873,GO:0046915,GO:0047884,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051704,GO:0051707,GO:0055085,GO:0061088,GO:0065007,GO:0065008,GO:0070838,GO:0071577,GO:0071704,GO:0072509,GO:0072511,GO:0098655,GO:0098660,GO:0098662,GO:1901360,GO:1901564
Exons5
EggNOG free text desc.NAD diphosphatase activity
EggNOG OGsCOG2816@1,KOG3084@2759
EC3.6.1.13,3.6.1.18
Cds size951
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig964.31323.1prot_Ecto-sp8_S_contig964.31323.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig964 2714..7935 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145327.869108-UTR-Ecto-sp8_S_contig964:2586..27131681145327.869108-UTR-Ecto-sp8_S_contig964:2586..2713Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig964 2587..2713 +
1681145327.9650214-UTR-Ecto-sp8_S_contig964:7935..83431681145327.9650214-UTR-Ecto-sp8_S_contig964:7935..8343Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig964 7936..8343 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145327.8881812-CDS-Ecto-sp8_S_contig964:2713..28941681145327.8881812-CDS-Ecto-sp8_S_contig964:2713..2894Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig964 2714..2894 +
1681145327.9061213-CDS-Ecto-sp8_S_contig964:5840..59691681145327.9061213-CDS-Ecto-sp8_S_contig964:5840..5969Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig964 5841..5969 +
1681145327.919678-CDS-Ecto-sp8_S_contig964:6335..64591681145327.919678-CDS-Ecto-sp8_S_contig964:6335..6459Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig964 6336..6459 +
1681145327.9312284-CDS-Ecto-sp8_S_contig964:6885..69851681145327.9312284-CDS-Ecto-sp8_S_contig964:6885..6985Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig964 6886..6985 +
1681145327.942837-CDS-Ecto-sp8_S_contig964:7518..79351681145327.942837-CDS-Ecto-sp8_S_contig964:7518..7935Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig964 7519..7935 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig964.31323.1

>prot_Ecto-sp8_S_contig964.31323.1 ID=prot_Ecto-sp8_S_contig964.31323.1|Name=mRNA_Ecto-sp8_S_contig964.31323.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=317bp
MISSARASALLIGRRVHVAAKRLRTSTAAAARPSPSFEYKVQSTDDPKPR
KTCTTCGFVNYENPKVICGSVLTAKGGADGKDDFYVLGRRSIQPRQGFWG
IPAGFLELGETGEEGAAREAREEMNTDVDVGGLLAVYSLPHIGQIQMIYS
SELKDTKGANDALANNAHSFSAGQETDEVFGVRWEDMPWDTLAFPTTSWA
LWHHRLRVEEAATRSIIGSSSGAPLGTGESTRRGFSGGDTAVSAGAKAVV
DDDRVVSTRADHSEPGVSDTMGTGVGVAFGAIAGTVFSVPSVDSSLFWHP
DVGLHQKEGWNVSTDS*
back to top

mRNA from alignment at Ecto-sp8_S_contig964:2587..8343+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig964.31323.1 ID=mRNA_Ecto-sp8_S_contig964.31323.1|Name=mRNA_Ecto-sp8_S_contig964.31323.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=5757bp|location=Sequence derived from alignment at Ecto-sp8_S_contig964:2587..8343+ (Ectocarpus species8 EcLAC_412)
CTTATCAACTCTCTAGCTGCCTTACTCTCTGCCTCTCTCTGGTCACGTGC
CACTGCTGTGCTGTATCGGCTAAAGAGGATACGTTCCAGTCGGTTCCAGG
AGCTGGATTGTGGATACATACAGTACCATGATCTCTTCAGCAAGGGCATC
GGCGTTGCTCATTGGGCGACGGGTACATGTAGCGGCGAAAAGGTTGCGAA
CATCAACCGCAGCAGCAGCACGACCTTCTCCTTCGTTCGAGTACAAGGTG
CAGTCGACCGACGATCCCAAGCCCAGAAAGACGTGCACCACTTGCGGGTT
TGTCAATTGTGAGTAAAGCGTTCGCCAACTACTGCTGTACCTGGTGCATG
TCTTGTGGAAACCTACTGATTCCACAAGGGAGTCCACAAAATCTGTAGAC
TATGTACAGTAAATCTGTATCATGTAGCCTCTGTAAGGCGGTCCCAGTAG
CCTTCGCAAGTTATTTTCCATTCAGCAAACATTTTGGATGAAGAATACAA
TCGGGGAAGTTGGGTTAATTTCCCGCGTAAGGCGGTCCTACATATTACAT
GTGTCTGCTCTTTTATTTGCTATTTACATAGGCTATGCATAGACTACTGT
AATGTTGATGGCTTGATGGACTTGCGTGATGTGCACCGCAATGAGTGCGG
CTGTCACATATAGAAGCCGAAATCAAATCGGTCGTTTTGGTACCCTTCGT
TGTGGAGCAATTGAGCTCCTCCGTTGAAAGACCACGGCACTCAGGCAGGG
ATGATCCTGGCCGCTTGTCTCGAGCCGATTACACCTTGTCTCGGTGTTTT
GTATAACTTCGACGGGTAAGCAACGGTCGTATCGCCTATGCATACGGACC
GTTGCCGTTGCCCGATAGCCATCACAATCCACGCTATGTATGTCTGGTGG
GCGCTGGGCATGTGCAGATACTGTGTCACCGACGGATTGTACGATCTACA
AGGATACAGGATGTATTGTCTAAAAGTATGCACGGTTTATGGTGGAAGAA
GGCGGTGTCACCGTCAGGGACGTTCCAATGGATATATAAATGCGTTTCGC
TGAAAGTGAACGACGTGGCAAAGTGAAGTATTCGCACGGAAGCAGCTTCT
CTTGGACGAATCCCCGGAAATAGATGTTGTTGCCCCCCCCACAAGCCAAC
GTTCGGCCCGAATATCTACCACCTAGGTTGCTTCTCACAGTTTCACAGTC
TGCGCACCGCGCAGCCTTTTCGTGTAAATTCGTGTCCAGCTGGGAGCACC
CTACGGGGCACCAGCTTTATTCATGGATCCTGTGGGTCATCGGGGGCAAA
GCACTTCGGTGTTAAGCCTTGCCGCCCGAACCACACCAGACTTGCGCTTG
TCCCAACAGTGCCTCTTTCTGAAGCCCCTGTGTGTTGCCTCCGAGATCCC
CGCGTACCACGTGAGGAGCGTGGCCCCAAGCTCGTGGGCTGCGCTTGCTT
CGGGGGAGCTGTGGGCAGAGTGGCGTCTGTCTCGCTTTCTCTACATTACT
TCGGCTGCTTCTTCGCCTGAAATCGGACGTGCTCGAAAGCGACGTATGGA
AAGGCGGATCTTGACCTTCAAGACCTTGCGCCAATAGCGTCCAGCTGCTC
CGAGCGAGTTCTGAGTGAAGCACCCAGCGTACGCCCTCGTGCGGCGCTTT
GTGAAGGATTCGCAGCACGCGAGAGGGTGCGTCCACGAATTTTGTACCAA
ATTGGTACCACGCACGGTAGTCCCAAGGCTCGTTCGTAGCGACCTGCCGA
AAACATCCTCTCCCGAGTCAATGAAAGAAAGGTTTCACTGACACGCGGTT
GCTGTACGCATCTGAGTTGACTTGAGATTGAAGAGTATGTCAGTGCTGTA
TCTCCACCGAGAAAGCTCGCAACACCTCTTCTTGGCCCAGCGCTAGTCAT
TCCCGGTTATTCCCAGGCGGTTTCAACGAGGGTCCCGATACGAGGGCACA
CGGGAGGCTTACTCTGCGGTTCATGGCAGCCACCTGGTGCAAGAGAACGG
CTTCTCTGTTGTGTCCCTCAAGAGAACTCGCGAGTAGGTTATTTCTACGA
GTTTCTTTTCCGAAGCGGAAGAAAGGATGACGTTCTGCAGAGACTCGGAG
CTCGCCACCTGGCAAAGCTACGCGATTTGGCACAGTCCATACCTCTGTAC
AACGTCGCACCGAGTTATGGTTCTCTCGGGAGCGATATTTAGATCGCCAC
ATTGTTCGCGCAATGTTGCAGACACGCTTCGGCGTTTTCGCCGTGAGTCA
TCTGCGATCCTAAGCCTGCAGGCCTTCTCCGTTGCAAGCTCGTGGAAGTA
CCCTTCGGCATTACATGCCCGAGCCCTTCTTGGCGCTCGCGTCGGTGGAT
GCGCAACCGTTGTTCGCTCGCGAGATCTCAACCCGTGAGGTTGACCGTGT
CAGCCAATCTGATTGCGACCCTCTCGCCCCAAGATTGTGAACAGAGCCTA
CACAATCCTTTGGTTCTTCTTTTCTCTGCTTACTTGGCGTGGAGGTTCCC
GGACTGTCGGCAAAATACACCCGTAGTTGCTTGCTTTGGTTAATGTGTGC
AAGAGACGAGTGGGTAAAACGTGAATAGGGCTGCTCTGTTGCGTGTTGGG
ATGATGTCTTTGTAATTTTGGTGGTACAGTCCCCGCTGGGTTTATGCATG
CGCCCTGCTCGACTAATGTTGAGGGCACTGCACGTATGCCGTAGTGACCC
ATGACTGATTGACGTATGATCCCTCACAAGTGTCATGAACGAAAATTTGG
ACTAGTGGCGTCGTTCCCAGATCGTGTACAAGACACACAGGTAGTCCGAC
GACCTCATAGGTAGCCCGACGACCGCTATTGACTGCAGTATGCTGCACAA
ATGTTTTTTTACTGCCGTGTTCTGCTGGCTCCCATTGTGCCTAACCTCCA
TTGTACAGCCTCGTTCTGTTGTTGGCAAGACAAGGCGGAATAATTCCGGT
CTCCCAACAGCAACAGGTAGATGACACCTCGCCTTCCTTTCTCGGCGGGA
GGCCGCGCAGGGGTTGCGTGATAGCTCCCTACCATGCCACGCCCTCCTTT
TACAACATGCCAATCCTATCTTACACCATCCGCGGGACCCCCGCATCCAC
TCGAGGTGATGATCACAACCGACTGGCTTCATATGCCTGGTGTGCCGCGG
TCCTATCCCATCGGATCCCCGGTGACCTTGGTTTCGACGAAACCCCATTG
ATTGTGAAGTATAACCATGTGCATGCGATGATACGCGGCGCTGTACCGGG
GAAGACGAAAACCCTAAGGTCATATGCGGCTCGGTGCTTACTGCGAAGGG
AGGCGCCGACGGAAAGGACGACTTTTATGTACTTGGCCGCCGCAGCATAC
AGCCACGACAAGGCTTTTGGGGCATACCTGCAGGTGCGGTGAAGTCGAAG
CCTGTTCCAGTTCTTGCCTCCGTGTGAGACATGTGTTAGTAAAAACATTT
TGCAGCGAAGAAGGCACCTGTGCGGACCTGCGCATGTGCGGAAAGCTCTC
GAAGTACTCCCGATAACGTTACTCGCTTGATGCGCTCCTCGTCGTTGTGT
GAAGAGAGGATCGGATTCGAAGTCTGTGTCGCGCCCCGGCGGCACCAACA
GCATTATAACGTATACCAAGGCACCCTCGGCACCTCAGTCGATGCGACTC
TCCGAAGTCGGGTGCATTGATTGATTTTACTGTGGTCGAGGCATGGATAC
AAGCACAGCTCTCGGCCTTACAAATCGCGGGTTGTGTTTTTGTCAACAGG
GTTTCTAGAGCTTGGAGAAACCGGCGAGGAGGGGGCGGCGAGGGAAGCGA
GGGAAGAGATGAACACCGATGTGGATGTTGGAGGGCTTCTTGCCGTGTAC
TCCCTGCCACACATCGGCCAAATGTAGGCAGGCCTGTCCTTTTCTACTTT
GATCTTGCATAGTGTGGGTGGAAGCGGTATTGGTTTTGTATGATCTGTGA
AGAGGAAAGCCCTCCTTGCCAATTTCAACATAAACAGTTCTACCCGTATG
GAGAACTAACCTTGCCAGGTGTTCAGGTGCTTGGACCAGGCGATTGTTCT
GGGCCTAACCTCTCGCCGCAGTTAGACAAGAACCGGGCGAGGAAATTCAC
CACCTTCTTGGCCGAAAAACACATTGGGCCATATAATGTAGGGTAAATTG
GGGATGCCTTGCCCAGGAGAAGGCGCCCGAATACTTTGCTCCTGCACAAG
GGATTTTCGTTTGTTCTTGGAGCCGTTGAGTTCTTCGACGTGATGATGCG
GGACACTCCCTACCTCTGTCCCTGGCCCCTGCTGATCTCAATGGTGAAGC
CAGATGATCTACTCGTCGGAACTAAAGGACACCAAAGGAGCGAATGACGC
ATTGGCCAACAACGCCCACAGCTTCTCTGCGGGCCAAGAAACAGACGAGG
CAAGTGCACTATGACTACGGTTGACTCCGGCCGCGACTAGTGCTGGATCG
AGGCCGAACTCTGCGTCAATTCGTACGGTGCCAAGAATGACAGAATGACG
GCCTCTGGCTGTGGTATAACCCGCAGTTAGGCTCTTCAATTGACTCATTG
GCTTGCCATGGTGTTTTTTTGCCTCGTTCTTTTGAAGATGTGGCGGGCGG
AGGGGGTGGCACGCCGTAGTTGAATTTCCATGCATGCCAGAAGTTTTTAT
TCACGACGTTGTAAATACGTTTAGCCAAACATCCAATGAGCACCCGAGCT
GCCGAGGGAGAAGTACGTCCACAATCTATTCCCGCGGGTGGTCTGCCGCT
GGCGCGTCCGTGCGAAGTACATTGGAGATGAGACGCATGGATCGACTCTG
TGTGTCTTTGGGTCTATCCTACCACGGTGTATGTAGCGAGCTGGTTGCTG
GTTACCTGATCATCTGCTTGCGACAAGCATGGAGCTGCCGTCTCACAACA
GATTGTGTTCCATTCCCTTCGCGTACGTGCAGGTGTTTGGCGTTCGATGG
GAAGATATGCCGTGGGATACCCTTGCCTTTCCCACCACATCGTGGGCGCT
GTGGCATCACCGTCTCAGGGTCGAGGAGGCCGCCACGAGGTCAATCATTG
GCTCATCGTCTGGGGCACCGTTGGGTACGGGTGAGAGCACAAGGAGAGGT
TTCTCAGGAGGAGATACCGCTGTTTCAGCTGGGGCGAAGGCTGTTGTTGA
CGATGACCGTGTCGTGAGCACAAGAGCGGATCACTCTGAGCCCGGGGTGT
CTGATACAATGGGAACCGGGGTCGGAGTCGCGTTCGGGGCTATTGCGGGG
ACGGTATTCTCGGTGCCATCGGTGGACAGCTCGCTTTTCTGGCACCCAGA
CGTAGGGCTGCACCAAAAGGAGGGCTGGAACGTTTCCACAGACTCGTAGT
TGATCAGAGTCACGCCTTTGTTTGTCTTTCCCGGGTACCAAGGTTGTTTT
GAGCCTGCACGGCGCACTCGATGGCCGTGTGCCCTGGTTTGGATCGCAGC
ACGCTACACAGGCGACCAGAGTGTTGGGTTGTCTCTTACCAGGTGTTGAT
TGTACAACCTGTCAGGCTTTGTCAATTCGCGTACACGGTGTCCTTGACCC
GCGTATGAAGGCTGTACCTTCGCCCCACTTGTTATTTTCTTTAGTGGTGC
ACAGATAAACGCATAATCGAGGCATTCAGAGGTTGTCTCACATTCCTCAA
GATTTGTATTGCCTGTACGGGACATGGTAGCGCAGGCACGATGGGTCTGG
GTATATAGATAACTACGCCACGCCATGGAGAAAAAACCGAAGGGATGAAG
GAATGAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig964:2587..8343+

>mRNA_Ecto-sp8_S_contig964.31323.1 ID=mRNA_Ecto-sp8_S_contig964.31323.1|Name=mRNA_Ecto-sp8_S_contig964.31323.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=951bp|location=Sequence derived from alignment at Ecto-sp8_S_contig964:2587..8343+ (Ectocarpus species8 EcLAC_412)
ATGATCTCTTCAGCAAGGGCATCGGCGTTGCTCATTGGGCGACGGGTACA
TGTAGCGGCGAAAAGGTTGCGAACATCAACCGCAGCAGCAGCACGACCTT
CTCCTTCGTTCGAGTACAAGGTGCAGTCGACCGACGATCCCAAGCCCAGA
AAGACGTGCACCACTTGCGGGTTTGTCAATTACGAAAACCCTAAGGTCAT
ATGCGGCTCGGTGCTTACTGCGAAGGGAGGCGCCGACGGAAAGGACGACT
TTTATGTACTTGGCCGCCGCAGCATACAGCCACGACAAGGCTTTTGGGGC
ATACCTGCAGGGTTTCTAGAGCTTGGAGAAACCGGCGAGGAGGGGGCGGC
GAGGGAAGCGAGGGAAGAGATGAACACCGATGTGGATGTTGGAGGGCTTC
TTGCCGTGTACTCCCTGCCACACATCGGCCAAATCCAGATGATCTACTCG
TCGGAACTAAAGGACACCAAAGGAGCGAATGACGCATTGGCCAACAACGC
CCACAGCTTCTCTGCGGGCCAAGAAACAGACGAGGTGTTTGGCGTTCGAT
GGGAAGATATGCCGTGGGATACCCTTGCCTTTCCCACCACATCGTGGGCG
CTGTGGCATCACCGTCTCAGGGTCGAGGAGGCCGCCACGAGGTCAATCAT
TGGCTCATCGTCTGGGGCACCGTTGGGTACGGGTGAGAGCACAAGGAGAG
GTTTCTCAGGAGGAGATACCGCTGTTTCAGCTGGGGCGAAGGCTGTTGTT
GACGATGACCGTGTCGTGAGCACAAGAGCGGATCACTCTGAGCCCGGGGT
GTCTGATACAATGGGAACCGGGGTCGGAGTCGCGTTCGGGGCTATTGCGG
GGACGGTATTCTCGGTGCCATCGGTGGACAGCTCGCTTTTCTGGCACCCA
GACGTAGGGCTGCACCAAAAGGAGGGCTGGAACGTTTCCACAGACTCGTA
G
back to top