mRNA_Ecto-sp8_S_contig96376.31321.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig96376.31321.1
Unique NamemRNA_Ecto-sp8_S_contig96376.31321.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig96376.31321.1 vs. uniprot
Match: D8LCL3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL3_ECTSI)

HSP 1 Score: 333 bits (855), Expect = 2.220e-113
Identity = 163/180 (90.56%), Postives = 171/180 (95.00%), Query Frame = 1 
Query:    1 ASECLVGCTLLGLDPFDDGMLVDWDDRGKCDDGAACEVNAGNTEAAWAGGGSADASRCLWAAGAGEEGSSGCTCSVCGAPDTTASSYMSDYPTWTRIACYIADMAAMGYHASVCVAAVVDDGVMACVDEPYEGPTFEQVSCPPTSLVLTTSSECLFGGSLREAEEMFASVGTPADFDHVI 540
            ASECLVGCTLLGLDPFD  MLV+WDDRGKCDDGAACEVNAGN EAAWAG GSADASRCLWAAG+GEEGS+ CTCSVCGAPDT+ASSYMSDYPTWTR+ACYIA M AMGY ASVCVAAVVDDGVMACVDEPYEGPTFEQ+SCPPTSLVLTTSS+CLF GSLREAEEMFAS+GTPADFDHVI
Sbjct:   40 ASECLVGCTLLGLDPFDADMLVEWDDRGKCDDGAACEVNAGNIEAAWAGCGSADASRCLWAAGSGEEGSTDCTCSVCGAPDTSASSYMSDYPTWTRVACYIAGMEAMGYDASVCVAAVVDDGVMACVDEPYEGPTFEQLSCPPTSLVLTTSSDCLFDGSLREAEEMFASIGTPADFDHVI 219
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BLAST of mRNA_Ecto-sp8_S_contig96376.31321.1 vs. uniprot
Match: A0A6H5JYT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYT2_9PHAE)

HSP 1 Score: 323 bits (828), Expect = 4.660e-109
Identity = 160/180 (88.89%), Postives = 166/180 (92.22%), Query Frame = 1 
Query:    1 ASECLVGCTLLGLDPFDDGMLVDWDDRGKCDDGAACEVNAGNTEAAWAGGGSADASRCLWAAGAGEEGSSGCTCSVCGAPDTTASSYMSDYPTWTRIACYIADMAAMGYHASVCVAAVVDDGVMACVDEPYEGPTFEQVSCPPTSLVLTTSSECLFGGSLREAEEMFASVGTPADFDHVI 540
            ASECLVGCTLLGLDPFD  M V+WDDRGKC DGAACEVNA +TEA WAG GSADASRCLWAAG+GEEGSS CTCSVCGAPDT+ASSYMSDYPTWTRI CYIADM AMGY ASVCVAAVVDDGVMACVDEPYEGPTFEQVSCPP+SL LTTSSECLF GSLREA EMFAS+GTPADFDHVI
Sbjct:   40 ASECLVGCTLLGLDPFDADMPVEWDDRGKCTDGAACEVNAWDTEATWAGCGSADASRCLWAAGSGEEGSSDCTCSVCGAPDTSASSYMSDYPTWTRITCYIADMEAMGYDASVCVAAVVDDGVMACVDEPYEGPTFEQVSCPPSSLALTTSSECLFDGSLREAGEMFASIGTPADFDHVI 219
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BLAST of mRNA_Ecto-sp8_S_contig96376.31321.1 vs. uniprot
Match: D8LCT0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCT0_ECTSI)

HSP 1 Score: 264 bits (674), Expect = 9.210e-87
Identity = 132/180 (73.33%), Postives = 146/180 (81.11%), Query Frame = 1 
Query:    1 ASECLVGCTLLGLDPFDDGMLVDWDDRGKCDDGAACEVNAGNTEAAWAGGGSADASRCLWAAGAGEEGSSGCTCSVCGAPDTTASSYMSDYPTWTRIACYIADMAAMGYHASVCVAAVVDDGVMACVDEPYEGPTFEQVSCPPTSLVLTTSSECLFGGSLREAEEMFASVGTPADFDHVI 540
            +SECLVGCTLL LDPFD  +LV+WDDR  CDD A CEVN G+T A W G GS DASRCLWAA +GE+GS  CTCSVCG+ ++  SSYMSDYPTWTRIACYIADM A+G+ ASVCVAAVVDDGVMACVDE YE PTFEQ SCP T L L TSS C F GSLREAEEMFA++GT A+ D VI
Sbjct:   10 SSECLVGCTLLALDPFDTDLLVEWDDRSTCDDSAGCEVNTGDTLARWTGCGSFDASRCLWAASSGEDGSDDCTCSVCGSVNSYGSSYMSDYPTWTRIACYIADMEAIGFDASVCVAAVVDDGVMACVDEAYEIPTFEQFSCPSTYLTLATSSNCEFDGSLREAEEMFATIGTSAESDDVI 189
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BLAST of mRNA_Ecto-sp8_S_contig96376.31321.1 vs. uniprot
Match: D7FX08_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX08_ECTSI)

HSP 1 Score: 211 bits (538), Expect = 8.760e-66
Identity = 106/163 (65.03%), Postives = 125/163 (76.69%), Query Frame = 1 
Query:   31 LGLDPFDDGMLVDWDDRGKCDDGAACEVNAGNTEAAWAGGGSADASRCLWAAGAGEEGSSGCTCSVCGAPDTTASSYMSDYPTWTRIACYIADMAAMGYHASVCVAAVVDDGVMACVDEPYEGPTFEQVSCPPTSLVLTTSSECLFGGSLREAEEMFA-SVGT 516
            +GLDPFD   LV+W++R  CD    CEVN G+T A W G GSADAS CLWAA +G +GSS C+CSVCG+ ++ ASSYMS+YPTWTRIACYIAD+ A+G+ ASVCVAAVVDDG MACVDEPYE P  EQ+SCP     LTTSS C   G+LREA EMF  ++GT
Sbjct:    1 MGLDPFDTDTLVEWNERDTCDGSVGCEVNTGDTLATWVGCGSADASSCLWAATSGTDGSSDCSCSVCGSANSFASSYMSEYPTWTRIACYIADVEAVGFDASVCVAAVVDDGAMACVDEPYETPALEQLSCPSAGFTLTTSSNCDLDGTLREAGEMFGETIGT 163
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig96376.31321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LCL3_ECTSI2.220e-11390.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYT2_9PHAE4.660e-10988.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCT0_ECTSI9.210e-8773.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FX08_ECTSI8.760e-6665.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig96376contigEcto-sp8_S_contig96376:5..544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size540
Hectar predicted targeting categoryother localisation
Exons1
Cds size540
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145327.7378657-CDS-Ecto-sp8_S_contig96376:4..5441681145327.7378657-CDS-Ecto-sp8_S_contig96376:4..544Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig96376 5..544 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig96376.31321.1prot_Ecto-sp8_S_contig96376.31321.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig96376 5..544 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig96376.31321.1

>prot_Ecto-sp8_S_contig96376.31321.1 ID=prot_Ecto-sp8_S_contig96376.31321.1|Name=mRNA_Ecto-sp8_S_contig96376.31321.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=180bp
ASECLVGCTLLGLDPFDDGMLVDWDDRGKCDDGAACEVNAGNTEAAWAGG
GSADASRCLWAAGAGEEGSSGCTCSVCGAPDTTASSYMSDYPTWTRIACY
IADMAAMGYHASVCVAAVVDDGVMACVDEPYEGPTFEQVSCPPTSLVLTT
SSECLFGGSLREAEEMFASVGTPADFDHVI
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mRNA from alignment at Ecto-sp8_S_contig96376:5..544+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig96376.31321.1 ID=mRNA_Ecto-sp8_S_contig96376.31321.1|Name=mRNA_Ecto-sp8_S_contig96376.31321.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=540bp|location=Sequence derived from alignment at Ecto-sp8_S_contig96376:5..544+ (Ectocarpus species8 EcLAC_412)
GCCTCCGAGTGCCTGGTAGGATGCACGTTGTTAGGGCTGGATCCTTTCGA
CGACGGCATGCTGGTGGATTGGGATGATCGCGGGAAATGCGACGACGGCG
CCGCGTGCGAAGTGAATGCTGGGAACACCGAAGCTGCCTGGGCTGGCGGC
GGCAGTGCCGATGCGTCCAGATGTCTATGGGCCGCCGGGGCTGGGGAGGA
GGGCTCCAGCGGCTGCACGTGCTCAGTGTGTGGCGCCCCGGACACCACTG
CCTCTTCGTATATGAGCGACTACCCCACGTGGACTAGAATAGCCTGTTAC
ATTGCGGACATGGCAGCCATGGGATATCATGCAAGCGTTTGCGTCGCTGC
GGTGGTCGACGATGGCGTCATGGCCTGCGTGGATGAACCGTACGAAGGAC
CAACGTTCGAGCAAGTTAGCTGCCCTCCTACTTCACTCGTCCTCACTACG
TCTAGTGAGTGCTTGTTCGGCGGATCCTTGAGGGAGGCAGAAGAAATGTT
CGCAAGTGTTGGGACCCCGGCGGATTTCGACCACGTCATC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig96376:5..544+

>mRNA_Ecto-sp8_S_contig96376.31321.1 ID=mRNA_Ecto-sp8_S_contig96376.31321.1|Name=mRNA_Ecto-sp8_S_contig96376.31321.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=540bp|location=Sequence derived from alignment at Ecto-sp8_S_contig96376:5..544+ (Ectocarpus species8 EcLAC_412)
GCCTCCGAGTGCCTGGTAGGATGCACGTTGTTAGGGCTGGATCCTTTCGA
CGACGGCATGCTGGTGGATTGGGATGATCGCGGGAAATGCGACGACGGCG
CCGCGTGCGAAGTGAATGCTGGGAACACCGAAGCTGCCTGGGCTGGCGGC
GGCAGTGCCGATGCGTCCAGATGTCTATGGGCCGCCGGGGCTGGGGAGGA
GGGCTCCAGCGGCTGCACGTGCTCAGTGTGTGGCGCCCCGGACACCACTG
CCTCTTCGTATATGAGCGACTACCCCACGTGGACTAGAATAGCCTGTTAC
ATTGCGGACATGGCAGCCATGGGATATCATGCAAGCGTTTGCGTCGCTGC
GGTGGTCGACGATGGCGTCATGGCCTGCGTGGATGAACCGTACGAAGGAC
CAACGTTCGAGCAAGTTAGCTGCCCTCCTACTTCACTCGTCCTCACTACG
TCTAGTGAGTGCTTGTTCGGCGGATCCTTGAGGGAGGCAGAAGAAATGTT
CGCAAGTGTTGGGACCCCGGCGGATTTCGACCACGTCATC
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