mRNA_Ecto-sp8_S_contig9637.31319.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9637.31319.1
Unique NamemRNA_Ecto-sp8_S_contig9637.31319.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig9637.31319.1 vs. uniprot
Match: D7FKC8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKC8_ECTSI)

HSP 1 Score: 961 bits (2484), Expect = 0.000e+0
Identity = 587/699 (83.98%), Postives = 590/699 (84.41%), Query Frame = 1
Query:    7 VLESRRQVEAAKEQEGKGDALVAGLSGRSWSKAKTEHLRSLERQRKEEETREXXXXXXXXXXXXXXXXXXXXXXXXXTEIADTLAAAADAVGAGTGRESRTAPNSRGXXXXXXXXXXXXXRRAKSHAGDEGHVNRTGDGGGIVWMTANERRQKTEGETSPDGGNHVTPVVAAEAKNDLSEDSFYRVAVEKIMEKERLGVASHGLLGGSGSXXXXXXXXXXXXXXXGSSGRHRTSCSGRPLDRSRKGAAAGPLLFHLPRGAAAGRRRRTKSGAPMHQSQARGANGTPNRTVGRRRSWEIQTTRTSERHAVTPPTLSADRAVARTSSLLSLYEAQSVEHVAGIRRDNSGPYLDDDDALGPSRGHTPAGWPGGGAQDRLTLAGQEQLSVLVATSEAEKITPSGGAAGAMDYPWSDERRASGSRGSGGGARHIVEGGTRLDAAAATVSGSPRWNDVLNFGQQLD--------EGEEHPRRRRGGDVGGGAGTRLGGRFDLWNESDDEVSVTEADRHEHHTNLERRNXXXXXGSNSQACEGAGALDSGDDGGHAMDSFLMPAQGKGFPVTAQAGGFFDAATSSADKGRLKVRDPRLFDPCSMRRRPDSDFGGTSAKPKVVDNEATRVPHFPEGRAASTGVTLLLGRRVDDEGRSFGGIGGEGRQVHGVEEVITVMFDRSKFNEQEAHRWWLANGARIVNISDRG 2079
            VLESRRQVEAAKEQEGKGDALVAGLSGRSWSKAKTEHLRSLERQRKEEETRE     XXXXXXXXXXXXXXXXXXX TEIADTLAAAADAVGAGTGRESRTAPNSRGXXXXXXXXXXXXXRRA+SHAGDEGHVNRTGDGGGIV MTANERRQKTEGETSPDGGNHVTPVVA EAKNDLSEDSFYRVAVEKIMEKERLGVASHGLLGGSGSXXXXXXXXXXXXXXXGSSGR RTSCSGR  DRSRKGAAAGPLLFHLPRGAAAGRR RTKSGAPMHQSQARGANGTPN TVGRRRSWEIQT+RTSERHAVTPPTLSADRA+ARTSSLLSLYEAQSVEHVAGIRRDNSGPYLDDDDALGPSR HT AGWPGG AQDRLTLAGQEQLSVLVATS AEK TPSGGAAGAMDYPWSDERRASGSRGSGGGARHIVEGGTRLDAAAATVSGSPRWNDVLN GQQLD        EGEEHPRRRRGGDVGGGA TRLGGRFDLWNESDDEVSVTEADRHEHHTNLERRNXXXXXGSNSQACEGAGALDSGDDGGHAMDSFLMPAQG GFPVTAQAGGFFDAATSSADKGRLKV                                                                                ITVMFDRSKFNEQEAHRWWLANGARIVNISDRG
Sbjct:  771 VLESRRQVEAAKEQEGKGDALVAGLSGRSWSKAKTEHLRSLERQRKEEETREEIREAXXXXXXXXXXXXXXXXXXXATEIADTLAAAADAVGAGTGRESRTAPNSRGXXXXXXXXXXXXXRRARSHAGDEGHVNRTGDGGGIVSMTANERRQKTEGETSPDGGNHVTPVVATEAKNDLSEDSFYRVAVEKIMEKERLGVASHGLLGGSGSXXXXXXXXXXXXXXXGSSGRRRTSCSGRSHDRSRKGAAAGPLLFHLPRGAAAGRRTRTKSGAPMHQSQARGANGTPNSTVGRRRSWEIQTSRTSERHAVTPPTLSADRALARTSSLLSLYEAQSVEHVAGIRRDNSGPYLDDDDALGPSRDHTSAGWPGGEAQDRLTLAGQEQLSVLVATSGAEKFTPSGGAAGAMDYPWSDERRASGSRGSGGGARHIVEGGTRLDAAAATVSGSPRWNDVLNIGQQLDQARGTSANEGEEHPRRRRGGDVGGGAVTRLGGRFDLWNESDDEVSVTEADRHEHHTNLERRNXXXXXGSNSQACEGAGALDSGDDGGHAMDSFLMPAQGTGFPVTAQAGGFFDAATSSADKGRLKV--------------------------------------------------------------------------------ITVMFDRSKFNEQEAHRWWLANGARIVNISDRG 1389          
BLAST of mRNA_Ecto-sp8_S_contig9637.31319.1 vs. uniprot
Match: A0A6H5L375_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L375_9PHAE)

HSP 1 Score: 829 bits (2141), Expect = 1.070e-283
Identity = 534/765 (69.80%), Postives = 546/765 (71.37%), Query Frame = 1
Query:    7 VLESRRQVEAAKEQEGKGDALVAGLSGRSWSKAKTEHLRSLERQRKEEETREXXXXXXXXXXXXXXXXXXXXXXXXXTEIADTLAAAADAVGAGTGRESRTAPNSRGXXXXXXXXXXXXXRRAKSHAGDEGHVNRTGDGGGIVWMTANERRQKTEGETSPDGGNHVTPVVAAEAKNDLSEDSFYRVAVEKIMEKERLGVASHGLLGGSGSXXXXXXXXXXXXXXXGSSGRHRTSCSGRPLDRSRKGAAAGPLLFHLPRGAAAGRRRRTKSGAPMHQSQARGANGTPNRTVGRRRSWEIQTTRTSERHAVTPPTLSADRAVARTSSLLSLYEAQSVEHVAGIRRDNSGPYLDDDDALGPSRGHTPAGWPGGGAQDRLTLAGQEQLSVLVATSEAEKITPSGGAAGAMDYPWSDERRASGSRGSGGGARHIVEGGTRLDAAAATVSGSPRWNDVLNFGQQLD--------EGEEHPRRRR------------------------------------------------------------------GGDVGGGAGTRLGGRFDLWNESDDEVSVTEADRHEHHTNLERRNXXXXXGSNSQACEGAGALDSGDDGGHAMDSFLMPAQGKGFPVTAQAGGFFDAATSSADKGRLKVRDPRLFDPCSMRRRPDSDFGGTSAKPKVVDNEATRVPHFPEGRAASTGVTLLLGRRVDDEGRSFGGIGGEGRQVHGVEEVITVMFDRSKFNEQEAHRWWLANGARIVNISDRG 2079
            VLESRRQVEAAKEQEGK D LVAGLSGRSWSKAKTEHLRSLERQRKEEETRE XXXXXXXXXXXXXXXXXXXXXXX TEIADTLAAAADA GAG GRESRTAPNSRGXXXXXXXXXX   RRA+SHAG+EGH +RTGDGGGIV MTAN+ RQ  EGE+SPDGGNHVTPVVAAE  NDLSEDSFYRVAVEKIMEKERLGVASH LLGGSGS XXXXXXXXX     GSSGR RTSCSGR   RSRKGAAAG LLFHLPRGAAAGRR RTKSGAPMHQSQARGANGTPN TVGRRRSWEIQ TRTSERHAVTPPTLSADRAVAR SSLLSLYEAQSVE VAGIRRDNSGPYLDDDDALGPSRG TPAGW GGGAQ+RLTLA QEQLSVLVA SE EK TPSGGAAGAMDYPWSDERR SGSRGS GGARH V+GGTRLDA AATV GSPRW+DVLN GQQLD        EGEEHPRRRR                                                                  GGDVGGGAGTRLGGRFDLWNESDD+VSVTEAD +E  TN ERRN     GS+SQACEGA A DSGDDG HAM SFLMPAQG G  VTAQAGGFFDAATSSADK                                                                                    VITVMFDRSKFNE+EAHRWWLANGARIVNISDRG
Sbjct:  776 VLESRRQVEAAKEQEGKEDVLVAGLSGRSWSKAKTEHLRSLERQRKEEETREEXXXXXXXXXXXXXXXXXXXXXXXATEIADTLAAAADAHGAGIGRESRTAPNSRGXXXXXXXXXX---RRARSHAGEEGHADRTGDGGGIVSMTANDGRQSREGESSPDGGNHVTPVVAAEENNDLSEDSFYRVAVEKIMEKERLGVASHDLLGGSGSGXXXXXXXXXEKSGAGSSGRRRTSCSGRSHGRSRKGAAAGSLLFHLPRGAAAGRRTRTKSGAPMHQSQARGANGTPNGTVGRRRSWEIQMTRTSERHAVTPPTLSADRAVARASSLLSLYEAQSVEQVAGIRRDNSGPYLDDDDALGPSRGRTPAGWLGGGAQNRLTLASQEQLSVLVAASEVEKTTPSGGAAGAMDYPWSDERRGSGSRGSSGGARHFVDGGTRLDATAATVRGSPRWDDVLNIGQQLDQARGTSANEGEEHPRRRRVSMGTGDCGGCRDRDEIVGIARNETLPSTTESSVSAVAGGTQSCHIHAHATAPYLDDDCVDLGHEKGGDVGGGAGTRLGGRFDLWNESDDQVSVTEADCYEPPTNGERRNEHHASGSDSQACEGAVAQDSGDDGAHAMGSFLMPAQGTGLTVTAQAGGFFDAATSSADK------------------------------------------------------------------------------------VITVMFDRSKFNEEEAHRWWLANGARIVNISDRG 1453          
BLAST of mRNA_Ecto-sp8_S_contig9637.31319.1 vs. uniprot
Match: A0A836CB26_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB26_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 4.910e-10
Identity = 46/115 (40.00%), Postives = 58/115 (50.43%), Query Frame = 1
Query: 1693 FFDAATSSADKGRLKVRDPRLFDPCSMRRRPDSDFGGTSAKPKVVDNEATRVPHFPEGRAASTGVTLLLGRRVDDEGRSFGGIGGEGRQVHGVEEVITVMFDRSKFNEQEAHRWW 2037
            FFD ATS+ADKGR +VRD R FD  +MRR      GG+ A+                      G+T+L+G      G S       GR++     VITVMFDR +FNE+EA  WW
Sbjct: 1342 FFDRATSTADKGRFRVRDARKFDAATMRRAAVHSSGGSDAE---------------------AGITVLVGCEA---GGSAAAAPMSGREL-----VITVMFDRGRFNEEEAAEWW 1427          
BLAST of mRNA_Ecto-sp8_S_contig9637.31319.1 vs. uniprot
Match: A0A6S9K3R8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9K3R8_HETAK)

HSP 1 Score: 68.2 bits (165), Expect = 6.550e-10
Identity = 44/123 (35.77%), Postives = 56/123 (45.53%), Query Frame = 1
Query: 1693 FFDAATSSADKGRLKVRDPRLFDPCSMRRRPDSDFGGTSAKPKVVDNEATRVPHFPEGRAASTGVTLLLGRRVDDEGRSFGGIGGEGRQVHGVEEVITVMFDRSKFNEQEAHRWWLANGARIV 2061
            FFD + SSADKGR +V D +LF   +M R+ DS                           A  GVTLL+G R+D +G               VE+VITV+FDR  F E +A  WW  N  R +
Sbjct:   61 FFDIS-SSADKGRFRVHDAKLFKADTMHRKVDS-------------------------ATAQGGVTLLMGERIDKQG---------------VEQVITVLFDRKIFEEDDAKVWWSYNRERFI 142          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9637.31319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FKC8_ECTSI0.000e+083.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L375_9PHAE1.070e-28369.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CB26_9STRA4.910e-1040.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6S9K3R8_HETAK6.550e-1035.77Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9637contigEcto-sp8_S_contig9637:2348..6750 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size2082
Hectar predicted targeting categoryother localisation
Exons8
Cds size2082
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9637.31319.1prot_Ecto-sp8_S_contig9637.31319.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9637 2348..6750 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145327.5457494-CDS-Ecto-sp8_S_contig9637:2347..24521681145327.5457494-CDS-Ecto-sp8_S_contig9637:2347..2452Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9637 2348..2452 -
1681145327.5586216-CDS-Ecto-sp8_S_contig9637:2737..29891681145327.5586216-CDS-Ecto-sp8_S_contig9637:2737..2989Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9637 2738..2989 -
1681145327.57217-CDS-Ecto-sp8_S_contig9637:3579..38881681145327.57217-CDS-Ecto-sp8_S_contig9637:3579..3888Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9637 3580..3888 -
1681145327.5834-CDS-Ecto-sp8_S_contig9637:4086..46891681145327.5834-CDS-Ecto-sp8_S_contig9637:4086..4689Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9637 4087..4689 -
1681145327.5954375-CDS-Ecto-sp8_S_contig9637:4982..54411681145327.5954375-CDS-Ecto-sp8_S_contig9637:4982..5441Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9637 4983..5441 -
1681145327.6070356-CDS-Ecto-sp8_S_contig9637:5707..58991681145327.6070356-CDS-Ecto-sp8_S_contig9637:5707..5899Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9637 5708..5899 -
1681145327.6236672-CDS-Ecto-sp8_S_contig9637:6218..62851681145327.6236672-CDS-Ecto-sp8_S_contig9637:6218..6285Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9637 6219..6285 -
1681145327.643653-CDS-Ecto-sp8_S_contig9637:6655..67501681145327.643653-CDS-Ecto-sp8_S_contig9637:6655..6750Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9637 6656..6750 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9637.31319.1

>prot_Ecto-sp8_S_contig9637.31319.1 ID=prot_Ecto-sp8_S_contig9637.31319.1|Name=mRNA_Ecto-sp8_S_contig9637.31319.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=694bp
EQVLESRRQVEAAKEQEGKGDALVAGLSGRSWSKAKTEHLRSLERQRKEE
ETREEIREARRRASELRAERERESAERRATEIADTLAAAADAVGAGTGRE
SRTAPNSRGGGGRRRLRRPPPPRRAKSHAGDEGHVNRTGDGGGIVWMTAN
ERRQKTEGETSPDGGNHVTPVVAAEAKNDLSEDSFYRVAVEKIMEKERLG
VASHGLLGGSGSGGDGGDGGDGGKSGAGSSGRHRTSCSGRPLDRSRKGAA
AGPLLFHLPRGAAAGRRRRTKSGAPMHQSQARGANGTPNRTVGRRRSWEI
QTTRTSERHAVTPPTLSADRAVARTSSLLSLYEAQSVEHVAGIRRDNSGP
YLDDDDALGPSRGHTPAGWPGGGAQDRLTLAGQEQLSVLVATSEAEKITP
SGGAAGAMDYPWSDERRASGSRGSGGGARHIVEGGTRLDAAAATVSGSPR
WNDVLNFGQQLDEGEEHPRRRRGGDVGGGAGTRLGGRFDLWNESDDEVSV
TEADRHEHHTNLERRNEHHASGSNSQACEGAGALDSGDDGGHAMDSFLMP
AQGKGFPVTAQAGGFFDAATSSADKGRLKVRDPRLFDPCSMRRRPDSDFG
GTSAKPKVVDNEATRVPHFPEGRAASTGVTLLLGRRVDDEGRSFGGIGGE
GRQVHGVEEVITVMFDRSKFNEQEAHRWWLANGARIVNISDRG*
back to top

mRNA from alignment at Ecto-sp8_S_contig9637:2348..6750-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9637.31319.1 ID=mRNA_Ecto-sp8_S_contig9637.31319.1|Name=mRNA_Ecto-sp8_S_contig9637.31319.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4403bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9637:2348..6750- (Ectocarpus species8 EcLAC_412)
GAACAGGTCTTGGAGTCGAGGAGGCAGGTCGAAGCGGCGAAGGAGCAGGA AGGGAAGGGAGACGCCCTTGTTGCCGGGCTAAGCGGTCGCAGCTGGTGAG TGATAAAAAATTCAAGTGCAAAGGGTACGTGGATAGGGTAGGATGAGATC GACAAACTCAATGTGCTTCTTCATCTTAGGTGAACATGTTTTGCTGCGCG TTCGTGTGCTACGATTAGCACCGCGCACACTTATGCCCAACCGATAGTGT AGGTAATACCCGCTGCGGATGTTCTAGCATGGTTTCACGATGCAACACTA AGTAGGCGTAATACGACTGCGAGCTAGCCAACAGGCGAAGGTGGCTGCTC TTTCGGTGCAGCTACAGCTACGCGATCTACATACAGGCTCTAGTTTTCCC GGGTCCCCATTGAAGCACCCATCGCCATGCCCGCCCCGTGTGTCCCTCGA ACTCTCGGGAGGAAGGTCGAAGGCAAAAACGGAGCACCTGCGTTCCCTTG AGCGACAAAGGAAAGAGGAAGAGACACGAGAGGTAAGTGACCAGGCCTTG CCAAATGTTGCCGTTGTCGGGGTAGGATGCCGTCCTTTCTCTGACGGCGC CTTGCCATTACTGCGGCTGGTGCCTGCCGGTGGTGATGCTGTGGCTATCA TCATCGGCAATCAAACCTCTACCGCCCTGTACCCGGATCTCCGTTATTTG TACTCAGGTCCAGCGCGTACGGACCTTCTTCCGGTACCACAGGTCCCGAC GAAACAACGACAAGACACAGAACCAAAAGAAGTTGATGATCAAAAGTGTA CCACTGGATTAAATTTGGGACACCGTTGCTTCCAACAACATAATTCCTTA GGAAATCCGAGAAGCACGACGACGAGCGTCGGAGTTGAGAGCAGAGCGGG AGCGCGAGTCCGCGGAACGGAGGGCCACGGAGATTGCCGATACTCTAGCG GCCGCCGCAGATGCAGTCGGAGCCGGCACCGGAAGGGAGTCCCGCACAGC GCCCAACTCCCGAGGTGGCGGGGGAAGGCGCAGGTTACGAAGGGTGAGCG CCAGATATTCACAGTTATATTGGAGGAAGGAGGAATCAAGGATGAGAAGG GGATTCAGGGCGGGTAGTCTCACTGCTGAGGTAGTTTTGCATCAGGAGTG CCAAAATTATGTCAGGAAACCCCACCCGCCTGGTGTGCTCCACACTTGGG CGTGATACCGCTATGACTACAAAAGATGCATTAGCGTTCTCCACAACCAC CGTGCAATGTTCATCGGAAAATACTTCTCCCTCGGCATGGGTTCCTTTTG TTCACCCAGCCGCCACCGCCGCGACGCGCGAAGAGCCACGCTGGAGACGA GGGACATGTCAACAGGACTGGCGATGGCGGTGGTATCGTGTGGATGACGG CCAATGAGCGACGGCAAAAGACGGAGGGAGAAACTTCCCCCGACGGTGGA AACCACGTCACTCCAGTCGTGGCAGCCGAGGCAAAAAACGACCTGTCCGA AGACTCTTTCTACCGGGTGGCCGTCGAAAAGATCATGGAGAAAGAGAGAC TTGGCGTCGCGAGCCATGGTCTACTTGGTGGTAGCGGAAGCGGTGGGGAT GGTGGAGATGGTGGTGACGGTGGGAAAAGCGGGGCGGGAAGCAGTGGTAG ACACCGGACCAGCTGTAGCGGCAGGCCGCTTGACCGATCGAGGAAGGGAG CCGCGGCTGGTCCACTTCTGTTCCATCTTCCTCGCGGCGCAGCGGCTGGT CGACGAAGAAGAACAAAGGTGAGTAGGTTTAGGTGGAAGCCGGTAGATGG TAATAACATTTCGAGGATAGCTAAGTTTTTTTCCGGTTACGAACGCGATG CTCCTTCAAAAAGACAGGAACTGGTTGTTGGGCGTCTCTTGGGAAGAGTG CGCTCAACAGGAGAAGCATCCTGTACTAAGTTCGTTGGCGCCCACGATCA GTTGTTCCTGCAAAACCCGTAGGTGCTTGCTCTACCATCAACGTGCACTT GACATCACGCTGAAGCAAACGGATCCAATGATCGATCGCCCCGCGCTCGA AACCATTTCAGTCGGGAGCACCGATGCATCAAAGTCAAGCCCGCGGTGCC AACGGCACCCCTAACAGAACGGTGGGGAGGAGAAGGTCTTGGGAGATCCA AACGACCAGGACATCAGAACGACACGCCGTCACACCTCCGACACTAAGCG CTGACAGGGCGGTGGCGCGAACAAGCAGCCTCCTGTCTCTGTACGAGGCG CAGTCCGTGGAGCACGTCGCCGGGATTCGCAGGGACAACAGCGGTCCATA CCTGGATGACGATGACGCTCTAGGCCCGTCACGCGGCCACACACCTGCGG GATGGCCTGGCGGTGGAGCGCAAGATCGCCTTACGCTTGCCGGCCAAGAG CAGTTGAGCGTCCTAGTAGCAACGTCTGAAGCCGAGAAAATCACCCCGAG TGGAGGAGCGGCGGGAGCCATGGATTACCCTTGGTCTGACGAGAGGCGGG CATCTGGGAGTCGTGGGAGCGGCGGAGGGGCTCGTCACATCGTAGAAGGC GGCACCCGACTGGACGCGGCCGCTGCCACCGTTAGTGGAAGTCCACGGTG GAATGATGTCCTCAATTTTGGGCAACAGCTAGACGAAGGAGAAGAACACC CACGACGACGACGGGTGAGTGTGGGGACTGGAGACTGTGGCGGATATCGC GACCGGGACGAGATCGTTGGCATCTCACGAAACGAGACTTTCCCTTCCAC TACGGAAACCTCGGTTACAGCCGTCGCGGGAGGAACCCAATCATGCAATG CTCACACCCCCGCTACCACGTCATACCTGGACGATGATGGTGTTGATCGT GGTCATGAAAAGGGTGGCGATGTTGGTGGAGGAGCGGGTACTCGTCTCGG TGGCAGGTTTGATCTGTGGAACGAGAGTGACGACGAGGTGAGCGTGACGG AGGCCGACCGCCACGAGCACCACACAAACCTCGAGAGGCGAAACGAACAT CACGCGTCCGGTTCGAATTCTCAAGCGTGCGAGGGAGCAGGTGCACTGGA TTCCGGCGACGATGGCGGTCATGCAATGGACAGCTTCCTGATGCCAGCAC AAGGGAAAGGTTTTCCTGTGACAGCACAGGCAGGCGGTTTCTTCGACGCG GCGACAAGCTCTGCGGACAAGGTTCGTCGTGAGGGTGGAGCATCACGCAT ATTCAGTCAGCCCCGGAAGCGCCCCAGCGTGTGTCGTAAACTTTGTTTTG GGCAGAGTCCCGGAGGGTTTTTCCAAGCCGAGTTTGAGTTATATTCGAAT GCTTCGCAATGTTCTTTCGGCGACGAAGTCTTACCGAACTATTCATCGCC AATGTGGTCCACTTGGAATTTTTTCTCAAATCCTCCTCGTGGCTTTCTCG GAACCCCAAACTCCCAGCGGATCAGATCCCGGCGACGTGAAATTCAAAAA TCCACGTACACATTGTAATATCTGGTACATATGGTACTTCACGCATAGCG CTGGCTCGTGAGTGCACATGCAGGAAGAAACCAATGGATTCGTATCTCAC GTTACATTCGAAGACATGAGAACGCAGATTAATTCTTCCGTGTAATCGCC GATCAAAAGGGTTCTTCAGTCTGCAAGACTGTGAAGTAAGAAACAGTGAG CACCAGGTACCCCTGAGACAGTTCCTTCCATCTATACTCGTAGAGAGAAC ATCGCCTGTACGTTCATTGCCGCCGGTACCGTTCTACGTCCGGGAACCCA TCGACAAACAGGGCCGCTTGAAGGTTAGAGATCCGCGGCTTTTTGATCCC TGCAGCATGCGTCGGCGGCCAGACTCTGATTTTGGAGGAACATCGGCCAA ACCGAAGGTGGTAGACAATGAAGCCACGAGAGTGCCTCACTTTCCGGAAG GACGAGCTGCATCGACGGGTGTGACGTTGTTGCTCGGGCGTCGAGTTGAT GACGAGGGCCGCAGCTTCGGTGGCATTGGAGGAGAGGGGCGTCAGGTTCA TGGGGTAGAGGAGGTGATTTCTGGGTGAACAACCATGGCGATCTAAAGGA CACAATCCGTATCTCCTCGCTGGCAGAAGGAGTTATCTCCATAGGATAGC CTGTACTAACTCGCAGGGATCACGTGATCTGCATGTTCAACTTTGGTATC GGACGCGCTCTGATTGAAGCACTCTTGAAGCCTCACACAAAAGTACCTTG GAGGCCAGTTCGATATTGTTTCCTTCACCCACGCTTTTTCGCACCGGTTG TTCCCCCTTTTGCTTCGATGCCTCCTGCCGTCTGGGCATGCATGGCAGGT CATCACCGTCATGTTTGACCGGTCCAAGTTCAACGAGCAAGAAGCGCACC GCTGGTGGCTCGCGAATGGCGCACGGATCGTGAATATCAGCGACCGCGGA TGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9637:2348..6750-

>mRNA_Ecto-sp8_S_contig9637.31319.1 ID=mRNA_Ecto-sp8_S_contig9637.31319.1|Name=mRNA_Ecto-sp8_S_contig9637.31319.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=2082bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9637:2348..6750- (Ectocarpus species8 EcLAC_412)
GAACAGGTCTTGGAGTCGAGGAGGCAGGTCGAAGCGGCGAAGGAGCAGGA
AGGGAAGGGAGACGCCCTTGTTGCCGGGCTAAGCGGTCGCAGCTGGTCGA
AGGCAAAAACGGAGCACCTGCGTTCCCTTGAGCGACAAAGGAAAGAGGAA
GAGACACGAGAGGAAATCCGAGAAGCACGACGACGAGCGTCGGAGTTGAG
AGCAGAGCGGGAGCGCGAGTCCGCGGAACGGAGGGCCACGGAGATTGCCG
ATACTCTAGCGGCCGCCGCAGATGCAGTCGGAGCCGGCACCGGAAGGGAG
TCCCGCACAGCGCCCAACTCCCGAGGTGGCGGGGGAAGGCGCAGGTTACG
AAGGCCGCCACCGCCGCGACGCGCGAAGAGCCACGCTGGAGACGAGGGAC
ATGTCAACAGGACTGGCGATGGCGGTGGTATCGTGTGGATGACGGCCAAT
GAGCGACGGCAAAAGACGGAGGGAGAAACTTCCCCCGACGGTGGAAACCA
CGTCACTCCAGTCGTGGCAGCCGAGGCAAAAAACGACCTGTCCGAAGACT
CTTTCTACCGGGTGGCCGTCGAAAAGATCATGGAGAAAGAGAGACTTGGC
GTCGCGAGCCATGGTCTACTTGGTGGTAGCGGAAGCGGTGGGGATGGTGG
AGATGGTGGTGACGGTGGGAAAAGCGGGGCGGGAAGCAGTGGTAGACACC
GGACCAGCTGTAGCGGCAGGCCGCTTGACCGATCGAGGAAGGGAGCCGCG
GCTGGTCCACTTCTGTTCCATCTTCCTCGCGGCGCAGCGGCTGGTCGACG
AAGAAGAACAAAGTCGGGAGCACCGATGCATCAAAGTCAAGCCCGCGGTG
CCAACGGCACCCCTAACAGAACGGTGGGGAGGAGAAGGTCTTGGGAGATC
CAAACGACCAGGACATCAGAACGACACGCCGTCACACCTCCGACACTAAG
CGCTGACAGGGCGGTGGCGCGAACAAGCAGCCTCCTGTCTCTGTACGAGG
CGCAGTCCGTGGAGCACGTCGCCGGGATTCGCAGGGACAACAGCGGTCCA
TACCTGGATGACGATGACGCTCTAGGCCCGTCACGCGGCCACACACCTGC
GGGATGGCCTGGCGGTGGAGCGCAAGATCGCCTTACGCTTGCCGGCCAAG
AGCAGTTGAGCGTCCTAGTAGCAACGTCTGAAGCCGAGAAAATCACCCCG
AGTGGAGGAGCGGCGGGAGCCATGGATTACCCTTGGTCTGACGAGAGGCG
GGCATCTGGGAGTCGTGGGAGCGGCGGAGGGGCTCGTCACATCGTAGAAG
GCGGCACCCGACTGGACGCGGCCGCTGCCACCGTTAGTGGAAGTCCACGG
TGGAATGATGTCCTCAATTTTGGGCAACAGCTAGACGAAGGAGAAGAACA
CCCACGACGACGACGGGGTGGCGATGTTGGTGGAGGAGCGGGTACTCGTC
TCGGTGGCAGGTTTGATCTGTGGAACGAGAGTGACGACGAGGTGAGCGTG
ACGGAGGCCGACCGCCACGAGCACCACACAAACCTCGAGAGGCGAAACGA
ACATCACGCGTCCGGTTCGAATTCTCAAGCGTGCGAGGGAGCAGGTGCAC
TGGATTCCGGCGACGATGGCGGTCATGCAATGGACAGCTTCCTGATGCCA
GCACAAGGGAAAGGTTTTCCTGTGACAGCACAGGCAGGCGGTTTCTTCGA
CGCGGCGACAAGCTCTGCGGACAAGGGCCGCTTGAAGGTTAGAGATCCGC
GGCTTTTTGATCCCTGCAGCATGCGTCGGCGGCCAGACTCTGATTTTGGA
GGAACATCGGCCAAACCGAAGGTGGTAGACAATGAAGCCACGAGAGTGCC
TCACTTTCCGGAAGGACGAGCTGCATCGACGGGTGTGACGTTGTTGCTCG
GGCGTCGAGTTGATGACGAGGGCCGCAGCTTCGGTGGCATTGGAGGAGAG
GGGCGTCAGGTTCATGGGGTAGAGGAGGTCATCACCGTCATGTTTGACCG
GTCCAAGTTCAACGAGCAAGAAGCGCACCGCTGGTGGCTCGCGAATGGCG
CACGGATCGTGAATATCAGCGACCGCGGATGA
back to top