mRNA_Ecto-sp8_S_contig96359.31316.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig96359.31316.1
Unique NamemRNA_Ecto-sp8_S_contig96359.31316.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig96359.31316.1 vs. uniprot
Match: D8LQ20_ECTSI (Proteasome subunit alpha type n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ20_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 2.410e-30
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 AYTQFGGLRPFGVSFLFTGWDEHHGFQLYHSDPSGNYGGWKATAIGANNQA 153
            AYTQFGGLRPFGVSFLFTGWDEHHGFQLYHSDPSGNYGGWKATAIGANNQA
Sbjct:  120 AYTQFGGLRPFGVSFLFTGWDEHHGFQLYHSDPSGNYGGWKATAIGANNQA 170
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BLAST of mRNA_Ecto-sp8_S_contig96359.31316.1 vs. uniprot
Match: A0A7S1WYT3_9CHLO (Proteasome subunit alpha type n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1WYT3_9CHLO)

HSP 1 Score: 107 bits (267), Expect = 1.910e-27
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:    4 YTQFGGLRPFGVSFLFTGWDEHHGFQLYHSDPSGNYGGWKATAIGANNQA 153
            YTQFGGLRPFGVS L+ GWDEHHGFQLYHSDPSGNYGGWKATA+GANNQA
Sbjct:  124 YTQFGGLRPFGVSLLYAGWDEHHGFQLYHSDPSGNYGGWKATAVGANNQA 173
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BLAST of mRNA_Ecto-sp8_S_contig96359.31316.1 vs. uniprot
Match: A0A8K1FDB1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FDB1_PYTOL)

HSP 1 Score: 107 bits (266), Expect = 2.420e-27
Identity = 47/51 (92.16%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    1 AYTQFGGLRPFGVSFLFTGWDEHHGFQLYHSDPSGNYGGWKATAIGANNQA 153
            AYTQFGG RPFGVSFLF GWD HHGFQLYHSDPSGNYGGWKATAIGANN+A
Sbjct:  120 AYTQFGGQRPFGVSFLFAGWDRHHGFQLYHSDPSGNYGGWKATAIGANNRA 170
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BLAST of mRNA_Ecto-sp8_S_contig96359.31316.1 vs. uniprot
Match: A0A662WSN1_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WSN1_9STRA)

HSP 1 Score: 105 bits (263), Expect = 3.470e-27
Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    1 AYTQFGGLRPFGVSFLFTGWDEHHGFQLYHSDPSGNYGGWKATAIGANNQA 153
            AYTQFGG RPFGVSFL+ GWD HHGFQLYHSDPSGNYGGWKATAIGANN+A
Sbjct:   90 AYTQFGGQRPFGVSFLYAGWDRHHGFQLYHSDPSGNYGGWKATAIGANNRA 140
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BLAST of mRNA_Ecto-sp8_S_contig96359.31316.1 vs. uniprot
Match: A0A836CL31_9STRA (Proteasome subunit alpha type n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL31_9STRA)

HSP 1 Score: 106 bits (264), Expect = 4.820e-27
Identity = 47/51 (92.16%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    1 AYTQFGGLRPFGVSFLFTGWDEHHGFQLYHSDPSGNYGGWKATAIGANNQA 153
            AYTQFGGLRPFGV+FLF GWD HHGFQLY SDPSGNYGGWKATAIGANNQA
Sbjct:  121 AYTQFGGLRPFGVAFLFAGWDAHHGFQLYQSDPSGNYGGWKATAIGANNQA 171
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BLAST of mRNA_Ecto-sp8_S_contig96359.31316.1 vs. uniprot
Match: M4C226_HYAAE (Proteasome subunit beta n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C226_HYAAE)

HSP 1 Score: 105 bits (263), Expect = 5.470e-27
Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    1 AYTQFGGLRPFGVSFLFTGWDEHHGFQLYHSDPSGNYGGWKATAIGANNQA 153
            AYTQFGG RPFGVSFL+ GWD HHGFQLYHSDPSGNYGGWKATAIGANN+A
Sbjct:  110 AYTQFGGQRPFGVSFLYAGWDRHHGFQLYHSDPSGNYGGWKATAIGANNRA 160
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BLAST of mRNA_Ecto-sp8_S_contig96359.31316.1 vs. uniprot
Match: A0A7S2XZ80_9STRA (Proteasome subunit alpha type n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ80_9STRA)

HSP 1 Score: 105 bits (263), Expect = 6.650e-27
Identity = 47/51 (92.16%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:    1 AYTQFGGLRPFGVSFLFTGWDEHHGFQLYHSDPSGNYGGWKATAIGANNQA 153
            AYTQFGGLRPFGVSFLF GWD+H+GFQLY SDPSGNYGGWKATAIGANNQA
Sbjct:  120 AYTQFGGLRPFGVSFLFAGWDKHYGFQLYQSDPSGNYGGWKATAIGANNQA 170
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BLAST of mRNA_Ecto-sp8_S_contig96359.31316.1 vs. uniprot
Match: A0A484DTJ8_BRELC (Proteasome subunit beta n=15 Tax=Peronosporaceae TaxID=4777 RepID=A0A484DTJ8_BRELC)

HSP 1 Score: 105 bits (263), Expect = 1.270e-26
Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    1 AYTQFGGLRPFGVSFLFTGWDEHHGFQLYHSDPSGNYGGWKATAIGANNQA 153
            AYTQFGG RPFGVSFL+ GWD HHGFQLYHSDPSGNYGGWKATAIGANN+A
Sbjct:  151 AYTQFGGQRPFGVSFLYAGWDRHHGFQLYHSDPSGNYGGWKATAIGANNRA 201
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BLAST of mRNA_Ecto-sp8_S_contig96359.31316.1 vs. uniprot
Match: K3XBK9_GLOUD (Proteasome subunit alpha type n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XBK9_GLOUD)

HSP 1 Score: 104 bits (260), Expect = 1.950e-26
Identity = 46/51 (90.20%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    1 AYTQFGGLRPFGVSFLFTGWDEHHGFQLYHSDPSGNYGGWKATAIGANNQA 153
            AYTQFGG RPFGVSFL+ GWD HHGFQLYHSDPSGNYGGWKATAIGANN A
Sbjct:  120 AYTQFGGQRPFGVSFLYAGWDRHHGFQLYHSDPSGNYGGWKATAIGANNGA 170
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BLAST of mRNA_Ecto-sp8_S_contig96359.31316.1 vs. uniprot
Match: A0A061QSZ7_9CHLO (Proteasome subunit alpha type n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QSZ7_9CHLO)

HSP 1 Score: 103 bits (258), Expect = 4.290e-26
Identity = 44/50 (88.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:    4 YTQFGGLRPFGVSFLFTGWDEHHGFQLYHSDPSGNYGGWKATAIGANNQA 153
            YTQFGGLRPFGVS L+ GWDEHHGFQLYHSDPSGN+GGWKATA+GAN+QA
Sbjct:  124 YTQFGGLRPFGVSLLYAGWDEHHGFQLYHSDPSGNFGGWKATAVGANHQA 173
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig96359.31316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ20_ECTSI2.410e-30100.00Proteasome subunit alpha type n=1 Tax=Ectocarpus s... [more]
A0A7S1WYT3_9CHLO1.910e-2792.00Proteasome subunit alpha type n=1 Tax=Tetraselmis ... [more]
A0A8K1FDB1_PYTOL2.420e-2792.16Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A662WSN1_9STRA3.470e-2790.20Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A836CL31_9STRA4.820e-2792.16Proteasome subunit alpha type n=1 Tax=Tribonema mi... [more]
M4C226_HYAAE5.470e-2790.20Proteasome subunit beta n=1 Tax=Hyaloperonospora a... [more]
A0A7S2XZ80_9STRA6.650e-2792.16Proteasome subunit alpha type n=1 Tax=Fibrocapsa j... [more]
A0A484DTJ8_BRELC1.270e-2690.20Proteasome subunit beta n=15 Tax=Peronosporaceae T... [more]
K3XBK9_GLOUD1.950e-2690.20Proteasome subunit alpha type n=1 Tax=Globisporang... [more]
A0A061QSZ7_9CHLO4.290e-2688.00Proteasome subunit alpha type n=1 Tax=Tetraselmis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig96359contigEcto-sp8_S_contig96359:15..167 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score117.5
Seed ortholog evalue1.9e-24
Seed eggNOG ortholog2880.D8LQ20
Model size153
KEGG koko:K02728
KEGG Pathwayko03050,map03050
KEGG ModuleM00337,M00340
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000502,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005829,GO:0005839,GO:0005840,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010035,GO:0010038,GO:0010498,GO:0010499,GO:0012505,GO:0016020,GO:0016043,GO:0019538,GO:0019773,GO:0019941,GO:0022607,GO:0022626,GO:0030163,GO:0031597,GO:0032991,GO:0034515,GO:0034622,GO:0042175,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043248,GO:0043632,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046686,GO:0050896,GO:0051603,GO:0065003,GO:0071704,GO:0071840,GO:0080129,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905368,GO:1905369,GO:1990904
Exons1
EggNOG free text desc.threonine-type endopeptidase activity
EggNOG OGsCOG0638@1,KOG0178@2759
EC3.4.25.1
Cds size153
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145327.4051447-CDS-Ecto-sp8_S_contig96359:14..1671681145327.4051447-CDS-Ecto-sp8_S_contig96359:14..167Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig96359 15..167 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig96359.31316.1prot_Ecto-sp8_S_contig96359.31316.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig96359 15..167 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig96359.31316.1

>prot_Ecto-sp8_S_contig96359.31316.1 ID=prot_Ecto-sp8_S_contig96359.31316.1|Name=mRNA_Ecto-sp8_S_contig96359.31316.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=51bp
AYTQFGGLRPFGVSFLFTGWDEHHGFQLYHSDPSGNYGGWKATAIGANNQ
A
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mRNA from alignment at Ecto-sp8_S_contig96359:15..167+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig96359.31316.1 ID=mRNA_Ecto-sp8_S_contig96359.31316.1|Name=mRNA_Ecto-sp8_S_contig96359.31316.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=153bp|location=Sequence derived from alignment at Ecto-sp8_S_contig96359:15..167+ (Ectocarpus species8 EcLAC_412)
GCTTACACACAATTCGGGGGACTGCGGCCGTTCGGCGTCTCCTTCCTCTT
TACGGGATGGGACGAGCACCACGGGTTCCAGCTTTACCACAGCGACCCGA
GTGGCAACTACGGGGGTTGGAAGGCAACGGCCATCGGGGCCAACAACCAG
GCG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig96359:15..167+

>mRNA_Ecto-sp8_S_contig96359.31316.1 ID=mRNA_Ecto-sp8_S_contig96359.31316.1|Name=mRNA_Ecto-sp8_S_contig96359.31316.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp8_S_contig96359:15..167+ (Ectocarpus species8 EcLAC_412)
GCTTACACACAATTCGGGGGACTGCGGCCGTTCGGCGTCTCCTTCCTCTT
TACGGGATGGGACGAGCACCACGGGTTCCAGCTTTACCACAGCGACCCGA
GTGGCAACTACGGGGGTTGGAAGGCAACGGCCATCGGGGCCAACAACCAG
GCG
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