mRNA_Ecto-sp8_S_contig9633.31312.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9633.31312.1
Unique NamemRNA_Ecto-sp8_S_contig9633.31312.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig9633.31312.1 vs. uniprot
Match: D8LD31_ECTSI (Ankyrin repeat-containing protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD31_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 5.140e-58
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 1
Query:    1 RMERAIYEAIRLGDTEPIVGLIRAGVSPNFKRPAGETCLHAAAYCGALDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDEVVGFLQPLAPSK 282
            RMERAIYEAIRLGDTEPIVGLIRAGVSPNFKRPAGETCLHAAAYCGALDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKD VVGFLQPLAPSK
Sbjct:  176 RMERAIYEAIRLGDTEPIVGLIRAGVSPNFKRPAGETCLHAAAYCGALDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDAVVGFLQPLAPSK 269          
BLAST of mRNA_Ecto-sp8_S_contig9633.31312.1 vs. uniprot
Match: A0A6H5KU86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU86_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 2.860e-54
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1
Query:    1 RMERAIYEAIRLGDTEPIVGLIRAGVSPNFKRPAGETCLHAAAYCGALDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDEVVGFLQPLAPSK 282
            RMERAIYEAIRLGDTEPIVGLIRAGVSPNFKRPAGETCLHAAAYCGALDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDEVVGFLQPLAPSK
Sbjct:  887 RMERAIYEAIRLGDTEPIVGLIRAGVSPNFKRPAGETCLHAAAYCGALDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDEVVGFLQPLAPSK 980          
BLAST of mRNA_Ecto-sp8_S_contig9633.31312.1 vs. uniprot
Match: A0A7S3NJJ4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJJ4_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 5.660e-15
Identity = 40/90 (44.44%), Postives = 56/90 (62.22%), Query Frame = 1
Query:    1 RMERAIYEAIRLGDTEPIVGLIRAGVSPNFKRPAGETCLHAAAYCGALDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDEVVGFLQPL 270
            RM+RAI++A R  + EP++ L+  G S N+ R + ET L AAAYCG  D+ K L E  ADP   DS GN  V LA +QG +++  ++  L
Sbjct:  476 RMDRAIWDAFRSAEFEPLLSLLDHGASANYSRLSKETALMAAAYCGRDDVAKRLLELGADPEATDSQGNTAVTLARVQGHNQLAEYIHGL 565          
BLAST of mRNA_Ecto-sp8_S_contig9633.31312.1 vs. uniprot
Match: A0A672H3I0_SALFA (Uncharacterized protein n=1 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672H3I0_SALFA)

HSP 1 Score: 59.3 bits (142), Expect = 3.320e-9
Identity = 35/91 (38.46%), Postives = 46/91 (50.55%), Query Frame = 1
Query:    1 RMERAIYEAIRLGDTEPIVGLIRAGVSPNFK-RPAGETCLHAAAYCGALDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDEVVGFLQPL 270
            R  R   + + +G T     L++ G  PN   R  G T LH AA  G LD V+ L    ADP  +D   ++P DLAA  G ++V  FLQ L
Sbjct:   36 RFGRTALQVMMMGSTPVAQVLLKHGADPNVADRSTGATPLHDAARTGFLDTVRLLVHFGADPRARDHANDVPADLAAQHGHEDVASFLQTL 126          
BLAST of mRNA_Ecto-sp8_S_contig9633.31312.1 vs. uniprot
Match: A0A0F8CHX7_LARCR (Cyclin-dependent kinase 4 inhibitor C n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A0F8CHX7_LARCR)

HSP 1 Score: 53.9 bits (128), Expect = 2.570e-6
Identity = 34/85 (40.00%), Postives = 48/85 (56.47%), Query Frame = 1
Query:   10 RAIYEAIRLGDTEPIVGLIRAGVSPNFK-RPAGETCLHAAAYCGALDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDEVVGFL 261
            R   + + LG T  I  L++AG  P+ + +  G T  H AA  G +D V+ L + +ADP + D   NLP+ LAAM G+ EVV  L
Sbjct:   40 RTALQVVMLGSTPVIEVLLKAGADPDRRDQVCGLTVTHDAARQGFVDSVRLLLDYRADPNLCDYKNNLPLHLAAMWGRLEVVKVL 124          
BLAST of mRNA_Ecto-sp8_S_contig9633.31312.1 vs. uniprot
Match: A0A6P3W3Q6_CLUHA (cyclin-dependent kinase 4 inhibitor C n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A6P3W3Q6_CLUHA)

HSP 1 Score: 49.3 bits (116), Expect = 2.380e-5
Identity = 32/86 (37.21%), Postives = 43/86 (50.00%), Query Frame = 1
Query:    7 ERAIYEAIRLGDTEPIVGLIRAGVSPNFKR-PAGETCLHAAAYCGALDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDEVVGFL 261
            +R   + + +G T     L+  G  PN +    G T LH AA  G L+ V+ L E  AD    D++   PVDLA + G  EVV FL
Sbjct:   36 QRTPLQVMMMGSTPVARLLLEHGAVPNVRDCSTGTTPLHDAARTGYLETVRLLVEFHADSQATDNNNCRPVDLAQLNGHQEVVDFL 121          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9633.31312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LD31_ECTSI5.140e-5898.94Ankyrin repeat-containing protein, putative n=1 Ta... [more]
A0A6H5KU86_9PHAE2.860e-54100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3NJJ4_9STRA5.660e-1544.44Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A672H3I0_SALFA3.320e-938.46Uncharacterized protein n=1 Tax=Salarias fasciatus... [more]
A0A0F8CHX7_LARCR2.570e-640.00Cyclin-dependent kinase 4 inhibitor C n=1 Tax=Lari... [more]
A0A6P3W3Q6_CLUHA2.380e-537.21cyclin-dependent kinase 4 inhibitor C n=1 Tax=Clup... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9633contigEcto-sp8_S_contig9633:5750..6031 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size282
Hectar predicted targeting categoryother localisation
Exons1
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145327.173922-CDS-Ecto-sp8_S_contig9633:5749..60281681145327.173922-CDS-Ecto-sp8_S_contig9633:5749..6028Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9633 5750..6028 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145327.186521-UTR-Ecto-sp8_S_contig9633:6028..60311681145327.186521-UTR-Ecto-sp8_S_contig9633:6028..6031Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9633 6029..6031 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9633.31312.1prot_Ecto-sp8_S_contig9633.31312.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9633 5750..6028 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9633.31312.1

>prot_Ecto-sp8_S_contig9633.31312.1 ID=prot_Ecto-sp8_S_contig9633.31312.1|Name=mRNA_Ecto-sp8_S_contig9633.31312.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=93bp
MERAIYEAIRLGDTEPIVGLIRAGVSPNFKRPAGETCLHAAAYCGALDLV
KDLAERKADPAVKDSHGNLPVDLAAMQGKDEVVGFLQPLAPSK
back to top

mRNA from alignment at Ecto-sp8_S_contig9633:5750..6031-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9633.31312.1 ID=mRNA_Ecto-sp8_S_contig9633.31312.1|Name=mRNA_Ecto-sp8_S_contig9633.31312.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=282bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9633:5750..6031- (Ectocarpus species8 EcLAC_412)
CGCATGGAGCGCGCGATCTACGAAGCCATCCGCCTGGGCGACACCGAGCC GATCGTCGGCCTCATCCGGGCCGGCGTGTCGCCGAACTTCAAGCGGCCGG CGGGAGAAACGTGTCTGCACGCCGCCGCCTACTGCGGCGCGCTTGATCTC GTGAAGGACCTCGCTGAGCGGAAGGCGGACCCTGCCGTGAAGGATTCGCA CGGAAACCTCCCCGTGGATCTGGCCGCGATGCAAGGGAAGGACGAGGTGG TGGGCTTCTTGCAGCCGCTGGCGCCTTCAAAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9633:5750..6031-

>mRNA_Ecto-sp8_S_contig9633.31312.1 ID=mRNA_Ecto-sp8_S_contig9633.31312.1|Name=mRNA_Ecto-sp8_S_contig9633.31312.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=279bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9633:5750..6031- (Ectocarpus species8 EcLAC_412)
ATGGAGCGCGCGATCTACGAAGCCATCCGCCTGGGCGACACCGAGCCGAT
CGTCGGCCTCATCCGGGCCGGCGTGTCGCCGAACTTCAAGCGGCCGGCGG
GAGAAACGTGTCTGCACGCCGCCGCCTACTGCGGCGCGCTTGATCTCGTG
AAGGACCTCGCTGAGCGGAAGGCGGACCCTGCCGTGAAGGATTCGCACGG
AAACCTCCCCGTGGATCTGGCCGCGATGCAAGGGAAGGACGAGGTGGTGG
GCTTCTTGCAGCCGCTGGCGCCTTCAAAG
back to top