mRNA_Ecto-sp8_S_contig9633.31312.1 (mRNA) Ectocarpus species8 EcLAC_412
|
Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig9633.31312.1 vs. uniprot
Match: D8LD31_ECTSI (Ankyrin repeat-containing protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD31_ECTSI) HSP 1 Score: 188 bits (477), Expect = 5.140e-58 Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 1
Query: 1 RMERAIYEAIRLGDTEPIVGLIRAGVSPNFKRPAGETCLHAAAYCGALDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDEVVGFLQPLAPSK 282
RMERAIYEAIRLGDTEPIVGLIRAGVSPNFKRPAGETCLHAAAYCGALDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKD VVGFLQPLAPSK
Sbjct: 176 RMERAIYEAIRLGDTEPIVGLIRAGVSPNFKRPAGETCLHAAAYCGALDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDAVVGFLQPLAPSK 269
BLAST of mRNA_Ecto-sp8_S_contig9633.31312.1 vs. uniprot
Match: A0A6H5KU86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU86_9PHAE) HSP 1 Score: 190 bits (483), Expect = 2.860e-54 Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1
Query: 1 RMERAIYEAIRLGDTEPIVGLIRAGVSPNFKRPAGETCLHAAAYCGALDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDEVVGFLQPLAPSK 282
RMERAIYEAIRLGDTEPIVGLIRAGVSPNFKRPAGETCLHAAAYCGALDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDEVVGFLQPLAPSK
Sbjct: 887 RMERAIYEAIRLGDTEPIVGLIRAGVSPNFKRPAGETCLHAAAYCGALDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDEVVGFLQPLAPSK 980
BLAST of mRNA_Ecto-sp8_S_contig9633.31312.1 vs. uniprot
Match: A0A7S3NJJ4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJJ4_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 5.660e-15 Identity = 40/90 (44.44%), Postives = 56/90 (62.22%), Query Frame = 1
Query: 1 RMERAIYEAIRLGDTEPIVGLIRAGVSPNFKRPAGETCLHAAAYCGALDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDEVVGFLQPL 270
RM+RAI++A R + EP++ L+ G S N+ R + ET L AAAYCG D+ K L E ADP DS GN V LA +QG +++ ++ L
Sbjct: 476 RMDRAIWDAFRSAEFEPLLSLLDHGASANYSRLSKETALMAAAYCGRDDVAKRLLELGADPEATDSQGNTAVTLARVQGHNQLAEYIHGL 565
BLAST of mRNA_Ecto-sp8_S_contig9633.31312.1 vs. uniprot
Match: A0A672H3I0_SALFA (Uncharacterized protein n=1 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672H3I0_SALFA) HSP 1 Score: 59.3 bits (142), Expect = 3.320e-9 Identity = 35/91 (38.46%), Postives = 46/91 (50.55%), Query Frame = 1
Query: 1 RMERAIYEAIRLGDTEPIVGLIRAGVSPNFK-RPAGETCLHAAAYCGALDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDEVVGFLQPL 270
R R + + +G T L++ G PN R G T LH AA G LD V+ L ADP +D ++P DLAA G ++V FLQ L
Sbjct: 36 RFGRTALQVMMMGSTPVAQVLLKHGADPNVADRSTGATPLHDAARTGFLDTVRLLVHFGADPRARDHANDVPADLAAQHGHEDVASFLQTL 126
BLAST of mRNA_Ecto-sp8_S_contig9633.31312.1 vs. uniprot
Match: A0A0F8CHX7_LARCR (Cyclin-dependent kinase 4 inhibitor C n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A0F8CHX7_LARCR) HSP 1 Score: 53.9 bits (128), Expect = 2.570e-6 Identity = 34/85 (40.00%), Postives = 48/85 (56.47%), Query Frame = 1
Query: 10 RAIYEAIRLGDTEPIVGLIRAGVSPNFK-RPAGETCLHAAAYCGALDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDEVVGFL 261
R + + LG T I L++AG P+ + + G T H AA G +D V+ L + +ADP + D NLP+ LAAM G+ EVV L
Sbjct: 40 RTALQVVMLGSTPVIEVLLKAGADPDRRDQVCGLTVTHDAARQGFVDSVRLLLDYRADPNLCDYKNNLPLHLAAMWGRLEVVKVL 124
BLAST of mRNA_Ecto-sp8_S_contig9633.31312.1 vs. uniprot
Match: A0A6P3W3Q6_CLUHA (cyclin-dependent kinase 4 inhibitor C n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A6P3W3Q6_CLUHA) HSP 1 Score: 49.3 bits (116), Expect = 2.380e-5 Identity = 32/86 (37.21%), Postives = 43/86 (50.00%), Query Frame = 1
Query: 7 ERAIYEAIRLGDTEPIVGLIRAGVSPNFKR-PAGETCLHAAAYCGALDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDEVVGFL 261
+R + + +G T L+ G PN + G T LH AA G L+ V+ L E AD D++ PVDLA + G EVV FL
Sbjct: 36 QRTPLQVMMMGSTPVARLLLEHGAVPNVRDCSTGTTPLHDAARTGYLETVRLLVEFHADSQATDNNNCRPVDLAQLNGHQEVVDFL 121 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9633.31312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig9633.31312.1 >prot_Ecto-sp8_S_contig9633.31312.1 ID=prot_Ecto-sp8_S_contig9633.31312.1|Name=mRNA_Ecto-sp8_S_contig9633.31312.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=93bp MERAIYEAIRLGDTEPIVGLIRAGVSPNFKRPAGETCLHAAAYCGALDLVback to top mRNA from alignment at Ecto-sp8_S_contig9633:5750..6031- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig9633.31312.1 ID=mRNA_Ecto-sp8_S_contig9633.31312.1|Name=mRNA_Ecto-sp8_S_contig9633.31312.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=282bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9633:5750..6031- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9633:5750..6031- >mRNA_Ecto-sp8_S_contig9633.31312.1 ID=mRNA_Ecto-sp8_S_contig9633.31312.1|Name=mRNA_Ecto-sp8_S_contig9633.31312.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=279bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9633:5750..6031- (Ectocarpus species8 EcLAC_412)back to top |