mRNA_Ecto-sp8_S_contig96323.31311.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig96323.31311.1
Unique NamemRNA_Ecto-sp8_S_contig96323.31311.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig96323.31311.1 vs. uniprot
Match: D7FVW7_ECTSI (ADH_zinc_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVW7_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 8.190e-26
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:   10 QVSRLPAGLTDRWDKDRRFLAAWSLVRELRPSVFLTTSSPPLDGAQEAYESL 165
            QVSRLPAGLTDRWDKDRRFLAAWSLVRELRPSVFLTTSSPPLDGAQEAYESL
Sbjct:  945 QVSRLPAGLTDRWDKDRRFLAAWSLVRELRPSVFLTTSSPPLDGAQEAYESL 996
[Close]
BLAST of mRNA_Ecto-sp8_S_contig96323.31311.1 vs. uniprot
Match: A0A6H5LPZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LPZ8_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 3.610e-22
Identity = 46/49 (93.88%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:   19 RLPAGLTDRWDKDRRFLAAWSLVRELRPSVFLTTSSPPLDGAQEAYESL 165
            +LPAGLTDRWDKDRRFLAAWSLVRELRPS FLTTS+PPLDGAQEAYESL
Sbjct:  570 KLPAGLTDRWDKDRRFLAAWSLVRELRPSDFLTTSAPPLDGAQEAYESL 618
[Close]
BLAST of mRNA_Ecto-sp8_S_contig96323.31311.1 vs. uniprot
Match: A0A7S4D6E6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6E6_HETAK)

HSP 1 Score: 64.3 bits (155), Expect = 2.520e-11
Identity = 33/55 (60.00%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:    1 KRKQVSRLPAGLTDRWDKDRRFLAAWSLVRELRPSVFLTTSSPPLDGAQEAYESL 165
            K  QVS +PA LTDRW K RRF AAW LVRELRPS  +T+    +  AQE YE L
Sbjct:  115 KSSQVSNVPAALTDRWTKARRFAAAWELVRELRPSRHITSRVAHVSEAQEMYERL 169
[Close]
BLAST of mRNA_Ecto-sp8_S_contig96323.31311.1 vs. uniprot
Match: A0A7S0W756_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W756_9CRYP)

HSP 1 Score: 65.9 bits (159), Expect = 3.390e-11
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   10 QVSRLPAGLTDRWDKDRRFLAAWSLVRELRPSVFLTTSSPPLDGAQEAYESL 165
            QVS++PA L+ RWDKDRRFL AW  V+ ++PS  + TS  PL GAQ AYE+L
Sbjct:  410 QVSKIPAHLSGRWDKDRRFLEAWRWVQIIKPSATMGTSVVPLGGAQSAYENL 461
[Close]
BLAST of mRNA_Ecto-sp8_S_contig96323.31311.1 vs. uniprot
Match: A0A7S1HEZ9_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HEZ9_HEMAN)

HSP 1 Score: 63.9 bits (154), Expect = 1.620e-10
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:   10 QVSRLPAGLTDRWDKDRRFLAAWSLVRELRPSVFLTTSSPPLDGAQEAYESL 165
            QVS++PA L+ RWDKDRRFL AW  V+ ++PS  L TS  PL  AQ AYE+L
Sbjct:  490 QVSKIPAHLSGRWDKDRRFLEAWRWVQIIKPSANLGTSVVPLSDAQSAYENL 541
[Close]
BLAST of mRNA_Ecto-sp8_S_contig96323.31311.1 vs. uniprot
Match: A0A812Q0F4_SYMPI (Tdh protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812Q0F4_SYMPI)

HSP 1 Score: 55.5 bits (132), Expect = 1.590e-7
Identity = 26/55 (47.27%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:    1 KRKQVSRLPAGLTDRWDKDRRFLAAWSLVRELRPSVFLTTSSPPLDGAQEAYESL 165
            K  QVSR+PA L+ RWDK+RR   AWS +RELRP  ++  +  P+  A   Y+ L
Sbjct:  689 KASQVSRIPAQLSTRWDKERRSSLAWSFIRELRPKEWIDLTFVPVSTAPAVYQEL 743
[Close]
BLAST of mRNA_Ecto-sp8_S_contig96323.31311.1 vs. uniprot
Match: A0A812UQQ9_9DINO (Tdh protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812UQQ9_9DINO)

HSP 1 Score: 53.5 bits (127), Expect = 7.600e-7
Identity = 25/55 (45.45%), Postives = 34/55 (61.82%), Query Frame = 1 
Query:    1 KRKQVSRLPAGLTDRWDKDRRFLAAWSLVRELRPSVFLTTSSPPLDGAQEAYESL 165
            K  QVS++PA L+ RW K+RRF  AWSL+R LRP  ++     P+  A + Y  L
Sbjct:  725 KASQVSQIPAALSTRWTKERRFDLAWSLIRALRPKEWIGMHLVPITAAPDVYRDL 779
[Close]
BLAST of mRNA_Ecto-sp8_S_contig96323.31311.1 vs. uniprot
Match: A0A835YW36_9STRA (ADH_zinc_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW36_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.790e-6
Identity = 25/55 (45.45%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:    1 KRKQVSRLPAGLTDRWDKDRRFLAAWSLVRELRPSVFLTTSSPPLDGAQEAYESL 165
            K  QVS +PA L+ RW K+RRF AAW LV+++RP+  + T +      QEA+++L
Sbjct:  227 KASQVSHIPAALSARWTKERRFQAAWELVQQIRPAENVATRTIAPGEIQEAFQAL 281
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig96323.31311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FVW7_ECTSI8.190e-26100.00ADH_zinc_N domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5LPZ8_9PHAE3.610e-2293.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4D6E6_HETAK2.520e-1160.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0W756_9CRYP3.390e-1159.62Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A7S1HEZ9_HEMAN1.620e-1059.62Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A812Q0F4_SYMPI1.590e-747.27Tdh protein n=1 Tax=Symbiodinium pilosum TaxID=295... [more]
A0A812UQQ9_9DINO7.600e-745.45Tdh protein n=1 Tax=Symbiodinium natans TaxID=8784... [more]
A0A835YW36_9STRA1.790e-645.45ADH_zinc_N domain-containing protein n=1 Tax=Tribo... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig96323contigEcto-sp8_S_contig96323:36..200 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score106.7
Seed ortholog evalue3.5e-21
Seed eggNOG ortholog2880.D7FVW7
Model size165
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.L-threonine 3-dehydrogenase activity
EggNOG OGs2REAB@2759,COG1063@1
Ec32 ortholog descriptionHAD-like domain
Ec32 orthologEc-01_002410.3
Cds size165
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145327.1367393-CDS-Ecto-sp8_S_contig96323:35..2001681145327.1367393-CDS-Ecto-sp8_S_contig96323:35..200Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig96323 36..200 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig96323.31311.1prot_Ecto-sp8_S_contig96323.31311.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig96323 36..200 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig96323.31311.1

>prot_Ecto-sp8_S_contig96323.31311.1 ID=prot_Ecto-sp8_S_contig96323.31311.1|Name=mRNA_Ecto-sp8_S_contig96323.31311.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=55bp
KRKQVSRLPAGLTDRWDKDRRFLAAWSLVRELRPSVFLTTSSPPLDGAQE
AYESL
back to top

mRNA from alignment at Ecto-sp8_S_contig96323:36..200+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig96323.31311.1 ID=mRNA_Ecto-sp8_S_contig96323.31311.1|Name=mRNA_Ecto-sp8_S_contig96323.31311.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=165bp|location=Sequence derived from alignment at Ecto-sp8_S_contig96323:36..200+ (Ectocarpus species8 EcLAC_412)
AAACGAAAACAGGTGAGCAGGCTCCCGGCGGGGCTTACGGACCGCTGGGA
CAAGGACCGCCGGTTCTTGGCGGCGTGGTCTCTCGTGCGAGAGCTGCGGC
CCTCCGTGTTCCTAACGACGTCGTCGCCGCCACTGGACGGGGCCCAGGAG
GCCTACGAGTCGCTC
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig96323:36..200+

>mRNA_Ecto-sp8_S_contig96323.31311.1 ID=mRNA_Ecto-sp8_S_contig96323.31311.1|Name=mRNA_Ecto-sp8_S_contig96323.31311.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=165bp|location=Sequence derived from alignment at Ecto-sp8_S_contig96323:36..200+ (Ectocarpus species8 EcLAC_412)
AAACGAAAACAGGTGAGCAGGCTCCCGGCGGGGCTTACGGACCGCTGGGA
CAAGGACCGCCGGTTCTTGGCGGCGTGGTCTCTCGTGCGAGAGCTGCGGC
CCTCCGTGTTCCTAACGACGTCGTCGCCGCCACTGGACGGGGCCCAGGAG
GCCTACGAGTCGCTC
back to top