mRNA_Ecto-sp8_S_contig96165.31283.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig96165.31283.1
Unique NamemRNA_Ecto-sp8_S_contig96165.31283.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig96165.31283.1 vs. uniprot
Match: D7G589_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G589_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 4.040e-21
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:    4 VTHTFKEFRRTHQDKWEESHKARFSRDQLDTFDDVLGGAHSYFI 135
            VTHTFKEFRRTHQDKWEESHKARFSRDQLDTFDDVLGGAHSYFI
Sbjct: 1992 VTHTFKEFRRTHQDKWEESHKARFSRDQLDTFDDVLGGAHSYFI 2035
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig96165.31283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G589_ECTSI4.040e-21100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig96165contigEcto-sp8_S_contig96165:53..190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score95.5
Seed ortholog evalue6.8e-18
Seed eggNOG ortholog2880.D7G589
Preferred nameBLM3
Model size138
KEGG koko:K06699
KEGG Pathwayko03050,map03050
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000502,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005839,GO:0006508,GO:0006807,GO:0006810,GO:0006913,GO:0008047,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009893,GO:0009894,GO:0009987,GO:0010498,GO:0010499,GO:0010604,GO:0010952,GO:0016020,GO:0016021,GO:0016043,GO:0016504,GO:0019222,GO:0019538,GO:0022607,GO:0030162,GO:0030163,GO:0030234,GO:0031224,GO:0031323,GO:0031325,GO:0031329,GO:0031503,GO:0031597,GO:0032268,GO:0032270,GO:0032991,GO:0034515,GO:0034622,GO:0042176,GO:0042393,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043248,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044425,GO:0044444,GO:0044445,GO:0044464,GO:0044877,GO:0045862,GO:0046907,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051235,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051603,GO:0051641,GO:0051649,GO:0052547,GO:0060255,GO:0061134,GO:0061136,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070577,GO:0070628,GO:0071704,GO:0071840,GO:0080090,GO:0098544,GO:0098545,GO:0098772,GO:0140030,GO:0140033,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1903050,GO:1903362,GO:1905368,GO:1905369,GO:1990236,GO:1990237
Exons1
EggNOG free text desc.acetylation-dependent protein binding
EggNOG OGsKOG1851@1,KOG1851@2759
Cds size138
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03051
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145324.8720028-CDS-Ecto-sp8_S_contig96165:52..1901681145324.8720028-CDS-Ecto-sp8_S_contig96165:52..190Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig96165 53..190 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig96165.31283.1prot_Ecto-sp8_S_contig96165.31283.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig96165 53..190 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig96165.31283.1

>prot_Ecto-sp8_S_contig96165.31283.1 ID=prot_Ecto-sp8_S_contig96165.31283.1|Name=mRNA_Ecto-sp8_S_contig96165.31283.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=46bp
QVTHTFKEFRRTHQDKWEESHKARFSRDQLDTFDDVLGGAHSYFI*
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mRNA from alignment at Ecto-sp8_S_contig96165:53..190+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig96165.31283.1 ID=mRNA_Ecto-sp8_S_contig96165.31283.1|Name=mRNA_Ecto-sp8_S_contig96165.31283.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=138bp|location=Sequence derived from alignment at Ecto-sp8_S_contig96165:53..190+ (Ectocarpus species8 EcLAC_412)
CAGGTGACGCACACATTCAAGGAGTTCCGTCGCACCCACCAGGACAAGTG
GGAGGAAAGCCACAAGGCACGATTCTCGCGGGACCAGCTCGACACGTTCG
ATGATGTACTCGGGGGCGCCCACTCGTACTTCATCTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig96165:53..190+

>mRNA_Ecto-sp8_S_contig96165.31283.1 ID=mRNA_Ecto-sp8_S_contig96165.31283.1|Name=mRNA_Ecto-sp8_S_contig96165.31283.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=138bp|location=Sequence derived from alignment at Ecto-sp8_S_contig96165:53..190+ (Ectocarpus species8 EcLAC_412)
CAGGTGACGCACACATTCAAGGAGTTCCGTCGCACCCACCAGGACAAGTG
GGAGGAAAGCCACAAGGCACGATTCTCGCGGGACCAGCTCGACACGTTCG
ATGATGTACTCGGGGGCGCCCACTCGTACTTCATCTGA
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