mRNA_Ecto-sp8_S_contig96162.31282.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig96162.31282.1
Unique NamemRNA_Ecto-sp8_S_contig96162.31282.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig96162.31282.1 vs. uniprot
Match: D7FR68_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR68_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 5.020e-21
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 1 
Query:    1 APEASEAPEVDASQPSTTLQIRLHDGRRVRAQLNMHHTVRHIQAIIAR 144
            AP+ASEAPEVDASQPSTTLQIRLHDGRRVRAQLNMHHTVRHIQAIIAR
Sbjct:  176 APDASEAPEVDASQPSTTLQIRLHDGRRVRAQLNMHHTVRHIQAIIAR 223
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BLAST of mRNA_Ecto-sp8_S_contig96162.31282.1 vs. uniprot
Match: A0A7S2FCW2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FCW2_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.050e-8
Identity = 25/45 (55.56%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    7 EASEAPEVDASQPSTTLQIRLHDGRRVRAQLNMHHTVRHIQAIIA 141
            EA+EAP VD ++P   + +RLH+G+R+RA LNM+HT+RH+QA+I+
Sbjct:  140 EATEAPVVDDAKPKAVIAVRLHNGKRIRATLNMNHTIRHLQALIS 184
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BLAST of mRNA_Ecto-sp8_S_contig96162.31282.1 vs. uniprot
Match: A0A5D6Y7H8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y7H8_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 3.580e-7
Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 APEASEAPEVDASQPSTTLQIRLHDGRRVRAQLNMHHTVRHIQAII 138
            A EA+E P VD  +P+TTLQ+RLHDG R+R  LN+ HT+R + AII
Sbjct:  177 AAEAAERPVVDDKKPTTTLQLRLHDGTRLRETLNLDHTIRDLHAII 222
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BLAST of mRNA_Ecto-sp8_S_contig96162.31282.1 vs. uniprot
Match: A0A835ZC87_9STRA (SEP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC87_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 4.940e-7
Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 APEASEAPEVDASQPSTTLQIRLHDGRRVRAQLNMHHTVRHIQAII 138
            A E    P VD +QP TTLQIRL DGRR+RA+LN+ HTVR +QA I
Sbjct:  178 ADEVGAPPVVDDAQPVTTLQIRLADGRRLRARLNLSHTVRDVQAFI 223
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BLAST of mRNA_Ecto-sp8_S_contig96162.31282.1 vs. uniprot
Match: A0A0P1AAT9_PLAHL (Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AAT9_PLAHL)

HSP 1 Score: 50.8 bits (120), Expect = 7.610e-7
Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:   13 SEAPEVDASQPSTTLQIRLHDGRRVRAQLNMHHTVRHIQAII 138
            SE P  D  +P+TTLQIRLH+G+R+R  LNM HT+R + AII
Sbjct:   19 SERPVTDDKKPTTTLQIRLHNGQRLRETLNMDHTIRDLHAII 60
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BLAST of mRNA_Ecto-sp8_S_contig96162.31282.1 vs. uniprot
Match: A0A2D4BXI6_PYTIN (Peroxin-1 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXI6_PYTIN)

HSP 1 Score: 52.4 bits (124), Expect = 1.500e-6
Identity = 27/43 (62.79%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:   10 ASEAPEVDASQPSTTLQIRLHDGRRVRAQLNMHHTVRHIQAII 138
            AS+ P VD  QP+TTLQIRLH+G R+R  LN+ HTVR + AII
Sbjct: 1245 ASDRPVVDDKQPTTTLQIRLHNGTRLRETLNLTHTVRDLHAII 1287
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BLAST of mRNA_Ecto-sp8_S_contig96162.31282.1 vs. uniprot
Match: D0N5D2_PHYIT (Uncharacterized protein n=19 Tax=Phytophthora TaxID=4783 RepID=D0N5D2_PHYIT)

HSP 1 Score: 51.2 bits (121), Expect = 3.310e-6
Identity = 25/42 (59.52%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:   13 SEAPEVDASQPSTTLQIRLHDGRRVRAQLNMHHTVRHIQAII 138
            +E P +D  +PSTTLQIRLH+G+R+R  LN+ HTVR + AII
Sbjct:  174 AERPVIDDKKPSTTLQIRLHNGQRLRETLNLDHTVRDLHAII 215
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BLAST of mRNA_Ecto-sp8_S_contig96162.31282.1 vs. uniprot
Match: A0A3F2RLP8_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RLP8_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 4.590e-6
Identity = 24/42 (57.14%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:   13 SEAPEVDASQPSTTLQIRLHDGRRVRAQLNMHHTVRHIQAII 138
            SE P +D  +P TTLQIRLH+G+R+R  LN+ HT+R + AII
Sbjct:  176 SERPVIDDKKPKTTLQIRLHNGQRLRETLNLEHTIRDLHAII 217
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BLAST of mRNA_Ecto-sp8_S_contig96162.31282.1 vs. uniprot
Match: M4BRU2_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BRU2_HYAAE)

HSP 1 Score: 50.1 bits (118), Expect = 8.690e-6
Identity = 24/44 (54.55%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    7 EASEAPEVDASQPSTTLQIRLHDGRRVRAQLNMHHTVRHIQAII 138
            + +E P VD  +P+TTLQ+RLH+G+R+R  LNM HT+R + AII
Sbjct:  169 QTAERPVVDDKKPTTTLQLRLHNGQRLRETLNMDHTLRDLHAII 212
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BLAST of mRNA_Ecto-sp8_S_contig96162.31282.1 vs. uniprot
Match: H3HCQ5_PHYRM (Peroxin-1 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HCQ5_PHYRM)

HSP 1 Score: 50.1 bits (118), Expect = 9.820e-6
Identity = 23/43 (53.49%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:   10 ASEAPEVDASQPSTTLQIRLHDGRRVRAQLNMHHTVRHIQAII 138
            ++E P +D  +P+TTLQIRLH+G+R+R  LN+ HT+R + AII
Sbjct: 1001 SAERPVIDDKKPTTTLQIRLHNGQRLRETLNLDHTIRDLHAII 1043
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig96162.31282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7FR68_ECTSI5.020e-2197.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2FCW2_9STRA1.050e-855.56Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A5D6Y7H8_9STRA3.580e-758.70Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A835ZC87_9STRA4.940e-763.04SEP domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A0P1AAT9_PLAHL7.610e-759.52Protein tyrosine phosphatase SHP1/Cofactor for p97... [more]
A0A2D4BXI6_PYTIN1.500e-662.79Peroxin-1 n=1 Tax=Pythium insidiosum TaxID=114742 ... [more]
D0N5D2_PHYIT3.310e-659.52Uncharacterized protein n=19 Tax=Phytophthora TaxI... [more]
A0A3F2RLP8_9STRA4.590e-657.14Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
M4BRU2_HYAAE8.690e-654.55Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
H3HCQ5_PHYRM9.820e-653.49Peroxin-1 n=1 Tax=Phytophthora ramorum TaxID=16432... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig96162contigEcto-sp8_S_contig96162:12..158 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score93.6
Seed ortholog evalue2.8e-17
Seed eggNOG ortholog2880.D7FR68
Model size147
KEGG koko:K14012
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000045,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006508,GO:0006511,GO:0006807,GO:0006914,GO:0006996,GO:0006997,GO:0006998,GO:0007030,GO:0007033,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010256,GO:0010498,GO:0010921,GO:0016043,GO:0016236,GO:0019208,GO:0019220,GO:0019222,GO:0019538,GO:0019888,GO:0019941,GO:0022607,GO:0030163,GO:0030234,GO:0031323,GO:0031399,GO:0031468,GO:0032182,GO:0032268,GO:0035303,GO:0035304,GO:0043130,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0043666,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051174,GO:0051246,GO:0051336,GO:0051603,GO:0060255,GO:0061024,GO:0061025,GO:0061919,GO:0065007,GO:0065009,GO:0070925,GO:0071704,GO:0071840,GO:0080090,GO:0098772,GO:1901564,GO:1901565,GO:1901575,GO:1905037
Exons1
EggNOG free text desc.nuclear envelope reassembly
EggNOG OGsKOG2086@1,KOG2086@2759
Cds size147
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145324.8336906-CDS-Ecto-sp8_S_contig96162:11..1581681145324.8336906-CDS-Ecto-sp8_S_contig96162:11..158Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig96162 12..158 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig96162.31282.1prot_Ecto-sp8_S_contig96162.31282.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig96162 12..158 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig96162.31282.1

>prot_Ecto-sp8_S_contig96162.31282.1 ID=prot_Ecto-sp8_S_contig96162.31282.1|Name=mRNA_Ecto-sp8_S_contig96162.31282.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=49bp
APEASEAPEVDASQPSTTLQIRLHDGRRVRAQLNMHHTVRHIQAIIAR*
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mRNA from alignment at Ecto-sp8_S_contig96162:12..158+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig96162.31282.1 ID=mRNA_Ecto-sp8_S_contig96162.31282.1|Name=mRNA_Ecto-sp8_S_contig96162.31282.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=147bp|location=Sequence derived from alignment at Ecto-sp8_S_contig96162:12..158+ (Ectocarpus species8 EcLAC_412)
GCTCCCGAGGCCTCGGAAGCGCCGGAAGTCGACGCCTCGCAGCCCTCCAC
GACGCTGCAGATCCGGCTCCACGACGGGAGGCGCGTCAGGGCGCAGCTCA
ACATGCACCACACCGTGCGACACATCCAGGCCATCATCGCCAGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig96162:12..158+

>mRNA_Ecto-sp8_S_contig96162.31282.1 ID=mRNA_Ecto-sp8_S_contig96162.31282.1|Name=mRNA_Ecto-sp8_S_contig96162.31282.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=147bp|location=Sequence derived from alignment at Ecto-sp8_S_contig96162:12..158+ (Ectocarpus species8 EcLAC_412)
GCTCCCGAGGCCTCGGAAGCGCCGGAAGTCGACGCCTCGCAGCCCTCCAC
GACGCTGCAGATCCGGCTCCACGACGGGAGGCGCGTCAGGGCGCAGCTCA
ACATGCACCACACCGTGCGACACATCCAGGCCATCATCGCCAGGTAA
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