mRNA_Ecto-sp8_S_contig9613.31277.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9613.31277.1
Unique NamemRNA_Ecto-sp8_S_contig9613.31277.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9613.31277.1 vs. uniprot
Match: A0A6H5KHR8_9PHAE (Sep15_SelM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KHR8_9PHAE)

HSP 1 Score: 238 bits (606), Expect = 1.660e-75
Identity = 117/121 (96.69%), Postives = 119/121 (98.35%), Query Frame = 2 
Query:    2 LGFTSVACSTCKRFEEIVADESLTEECLQCCQEAKSSSKKYASAKLVYDPRWLSADPELRGFVNDRAADHPALELEPTLYAKTVLLMSEEGADADDVDVINIKRWKVDSIADYLNEHLYEQ 364
            LGFTSV+CSTCKRFEEIVADESLT+ECLQCCQEAKSSSKKYASAKLVYDPRWLSADPELRGFVNDRA DHPALELEPTLYAKTVLLMSEEGADADDVDVINIKRWKVDSIADYLNEHL EQ
Sbjct:   36 LGFTSVSCSTCKRFEEIVADESLTDECLQCCQEAKSSSKKYASAKLVYDPRWLSADPELRGFVNDRATDHPALELEPTLYAKTVLLMSEEGADADDVDVINIKRWKVDSIADYLNEHLDEQ 156
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BLAST of mRNA_Ecto-sp8_S_contig9613.31277.1 vs. uniprot
Match: A0A835Z2C5_9STRA (Sep15_SelM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2C5_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.440e-14
Identity = 49/126 (38.89%), Postives = 69/126 (54.76%), Query Frame = 2 
Query:    2 LGFT-SVACSTCKRFEEIVADESLTEECLQCCQE-----AKSSSKKYASAKLVYDPRWLSADPELRGFVNDRAADHPALELE--PTLYAKTVLLMSEEGADADDVDVINIKRWKVDSIADYLNEHL 355
            LGFT ++ C+TC R ++IV DE+LT ECL CC       A   + +Y  A+LV D R  SA   +  FVND A D   LE++  P    + +L  SE+  +    + I I +W  D I +YL E+L
Sbjct:   44 LGFTEALLCATCDRVKDIVGDEALTNECLNCCTTPPEATASGGTARYQFARLVLDRRIQSAFESVNAFVNDYAVDFEQLEVDHGPGALPQLLLYESEDDVEGPYSERIRIDKWPTDVIVEYLKENL 169
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9613.31277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KHR8_9PHAE1.660e-7596.69Sep15_SelM domain-containing protein n=2 Tax=Ectoc... [more]
A0A835Z2C5_9STRA1.440e-1438.89Sep15_SelM domain-containing protein n=1 Tax=Tribo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9613contigEcto-sp8_S_contig9613:3894..7166 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score72.8
Seed ortholog evalue3.7e-11
Seed eggNOG ortholog2880.D8LI87
Preferred nameSELENOF
Model size979
KEGG koko:K05313
KEGG TC1.A.10.1.14,1.A.10.1.15,1.A.10.1.16,1.A.10.1.17
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000902,GO:0001101,GO:0003006,GO:0003674,GO:0003824,GO:0004601,GO:0004672,GO:0004674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005788,GO:0005975,GO:0006323,GO:0006325,GO:0006457,GO:0006458,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006884,GO:0006996,GO:0006997,GO:0007154,GO:0007165,GO:0007166,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007289,GO:0008150,GO:0008152,GO:0008361,GO:0008379,GO:0008430,GO:0009311,GO:0009636,GO:0009653,GO:0009719,GO:0009725,GO:0009751,GO:0009826,GO:0009987,GO:0009992,GO:0010033,GO:0012505,GO:0014070,GO:0015036,GO:0016043,GO:0016049,GO:0016209,GO:0016301,GO:0016310,GO:0016491,GO:0016667,GO:0016684,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0019725,GO:0019953,GO:0022412,GO:0022414,GO:0023052,GO:0030104,GO:0030154,GO:0031974,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032989,GO:0035092,GO:0036211,GO:0040007,GO:0042221,GO:0042493,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045454,GO:0046677,GO:0048232,GO:0048468,GO:0048515,GO:0048589,GO:0048609,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050896,GO:0051084,GO:0051276,GO:0051704,GO:0051716,GO:0051920,GO:0055082,GO:0055114,GO:0060560,GO:0065007,GO:0065008,GO:0070013,GO:0070887,GO:0071103,GO:0071704,GO:0071840,GO:0090066,GO:0097237,GO:0098754,GO:0098869,GO:0140096,GO:1901564,GO:1901700,GO:1990748
Exons6
EggNOG free text desc.selenium binding
EggNOG OGsKOG3384@1,KOG3384@2759
Cds size108
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04040
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9613.31277.1prot_Ecto-sp8_S_contig9613.31277.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9613 4560..5195 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145324.3624053-UTR-Ecto-sp8_S_contig9613:3893..39621681145324.3624053-UTR-Ecto-sp8_S_contig9613:3893..3962Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9613 3894..3962 -
1681145324.3767576-UTR-Ecto-sp8_S_contig9613:4016..45591681145324.3767576-UTR-Ecto-sp8_S_contig9613:4016..4559Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9613 4017..4559 -
1681145324.4134755-UTR-Ecto-sp8_S_contig9613:5195..52251681145324.4134755-UTR-Ecto-sp8_S_contig9613:5195..5225Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9613 5196..5225 -
1681145324.4263437-UTR-Ecto-sp8_S_contig9613:5776..58841681145324.4263437-UTR-Ecto-sp8_S_contig9613:5776..5884Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9613 5777..5884 -
1681145324.440986-UTR-Ecto-sp8_S_contig9613:6121..61771681145324.440986-UTR-Ecto-sp8_S_contig9613:6121..6177Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9613 6122..6177 -
1681145324.4591148-UTR-Ecto-sp8_S_contig9613:7101..71661681145324.4591148-UTR-Ecto-sp8_S_contig9613:7101..7166Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9613 7102..7166 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145324.3896484-CDS-Ecto-sp8_S_contig9613:4559..46231681145324.3896484-CDS-Ecto-sp8_S_contig9613:4559..4623Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9613 4560..4623 -
1681145324.4019623-CDS-Ecto-sp8_S_contig9613:5151..51951681145324.4019623-CDS-Ecto-sp8_S_contig9613:5151..5195Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9613 5152..5195 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9613.31277.1

>prot_Ecto-sp8_S_contig9613.31277.1 ID=prot_Ecto-sp8_S_contig9613.31277.1|Name=mRNA_Ecto-sp8_S_contig9613.31277.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=36bp
MSEEGADADDVDVINIKRWKVDSIADYLNEHLYEQ*
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mRNA from alignment at Ecto-sp8_S_contig9613:3894..7166-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9613.31277.1 ID=mRNA_Ecto-sp8_S_contig9613.31277.1|Name=mRNA_Ecto-sp8_S_contig9613.31277.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3273bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9613:3894..7166- (Ectocarpus species8 EcLAC_412)
GCTAGGGTTCACAAGTGTTGCCTGTTCCACGTGCAAGAGGTTCGAGGAGA
TCGTCGCGGATGAAAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGCTCGTTCACAGCAGGTTTCTGAGGAAATGGGGCATGTT
CGGATGACGAGATTTGGGCACTATGAGTCTATGGGTGATGCTCCGCGAGA
ATTCCCGTATTGCTGACATTAGATGTAGAGTCCGTCGACCTAACAGTAGT
ACACCCCCTTAACCCTAACCCTCATAGTAGTACCCAGTCCCTCCACAAAA
ATGCCGAAAAAATGTTTGTCAGCCATTGGTCGAGGGGCTACAGTCCCTCC
AAAGAATCTGAGCTCCTTGCCAGACAAAGGGTGACTTGGCTTCAGTATGA
AAAGTTCACTTTGTTTCACTTTTCATACTGAAGCCAGGTCGGCAAATTTT
TCCAGTACCAGGCGATGTACAGTTTTGTGAACTGGGGGGCACGCGGATTG
GGAGATGTGTACAGCAAGTCAGAGGCCCAGGAGAGGCATCACACAGCATA
TCACACAGCGTACCACCTCACTCAGCCAACCATGATAGACCAAGGGTTCT
CACGTACGTTGCATACAGCGGAGCCTAGGGTGACTACAGTGCGGTAAATA
GGCCTTTGCGTGCTGTGTCCCAAAGTGTCCCCATTTGGGCTTCCAGTACT
AGGAGGGTTAAGAGTCCGTAGGCTAGACGAACTGCAGCAGTTGTTCATTA
TACTGCGGCTGCGGATACATGTGCACACACGCGGGCAAGCCGACTAGATA
CACCCGAGGATGTTTAGCAGTTCCACCAACCGTCCAAGAATAATATACGC
AGCGTGGTGACTACAGCGTTCTTGACTTTGGTGCGATACCACGGCGGTGA
GTTGTACTCAGATTAGTCCACCCACAGGCACGTGTGCTACTTCGTGTCCA
AACATATTTCTCTAATCCTGTTACTAACCACGGCAACAGGTCTAACAGAG
GAGTGTCTGCAATGCTGCCAGGAGGCGAAAAGCTCTTCGAAAAAGGTGAG
GCCCTTGAAACCCGACAAGCCTGACCCATTGATCACTTCACATGGGGTTT
TCGAAGGTGTCGAAGTCCGCCCAAGTACATTCATAAGAATACGCAACAAG
TTCTGGCTACAGTAGATTCAACGCACTCACAGCTCTAGGTACGATCAACG
CCCAGAGACTTTTCACGTCCTCACTTTGCTGCATCAGCGGCTCTCACACG
GCTCGCACCCCTCTCCGCCCCGCCCTCTTTAGTACGCCTCGGCGAAGTTG
GTGTACGATCCAAGATGGCTTAGCGCCGACCCTGAGCTTCGAGGTTTTGT
CAACGACAGAGCCGCCGATCACCCCGCCCTGGAGCTCGAGGTATGCTGCC
ACTCATGTATGTTTGTCTTTCCAAGCGTCCAGCAGTGTTGTCCGTTTGGA
ACTAGTCATTATCACCTCGTATCGATCGATCGGAGTCGTAGATTACCGAG
GCTCACTGAACTACACCAGTGTTTTGGGGACATCTTAGTTTAGATCGACC
TCGGTCTTCTTGTTGGGGCGTTGGGCTGACCATGCCCCATGTGCGGTATC
TGCAACGCACACGTGTGCGAGCCGTGATGCCGTTTTTGCTTTTGGGTTGA
CCACCAGGGCCAGTGGAACGCAGATAACGCGTTTATGGAACTTTTGTACG
GCGGCTCAAGGCGGTTGGTACACCACCATTTTGGTCTGTACGCGTTCCTG
TGAGAACCGTGGCTAGGTGCTTTCTTTCGCTCGGCAGCAGGGTGCATAGG
ATCCTTGTCCTACCATCGCGCTCTGGACTTGATTGCGAGAGTTTCCATGC
CCAAAGCTTAGACGAATTGCTTGCGCCGCGTTTCCGTCGTCGCCCCCGCC
GTCGCTCCGCCACCCGTCACCGCCCCCCTGCCTTCAAACAGCCAACTCTG
TACGCGAAGACCGTGTTGCTCATGTCGGAGGAAGGAGCGGATGCGGATGA
CGTCGACGTTATCAAGTGAGCTCGCTCCCGTCATTTTTCTAGCCCGTACC
GTGTCGGCGGCGGGCGTATAATAGTTGTGACTGCTCGAGAGACGCAGTGG
TCGTGCCGTGTTGCGAAAAAATGACCATCTAGTGTGGGCCATTCTCAACA
GCTGCCTACAGGGCGTCAACCACCGCGCAAATCGTTGAGGGGGATATGTC
CTGACGTTGATTTGCCTCTAGTGTGGGCCGGGCGGTGCTCGAAATCATTG
CTCATGAGTGATGCAGAGATGTGCCACCTCCTCATCGCCTATATGCTTTG
CCCCAGGGCGTGTAACCTTGCCGATGCTTTACTTTTGGATTAATGTGCAC
TTTAAGTATTTCAACACTAGTTTAGTGCTTGCCAATCAGAAAACTGCTTG
CCCTTCCGAAAGACATCAGCTTCTTTATGACAGAAGACCACCACAGCTTC
CGTCCGGTGGCCGTGCATAACCCTGTTGACCCTCTGTTTGTCCCTTGCCC
CTTGTTTCGACCCCCTTTCCGCCTCGTGGAACCTGTTGCACAGCATCAAG
CGGTGGAAGGTGGACTCGATAGCTGACTACTTGAACGAGCATTTGTACGA
GCAATAGCACGAGCGTTTATAGAGCTCCTCCCGCTGGCTTCGGCCGAGGT
GTTGCTTCTTCTCCATTGGCCCCAGGTCGGGTTCATGAAGCACTGGTGTG
ATTGTGTAGTGCGATTGAGAGAGAGATCAGCCTCACGGTGGAGCTCAAGC
GACTGCTGTGGTTCATGCCAATACGTTATTGGGACTCTCGCCGTGCTTGT
TCGGAGCGGGCGGCGTCAGTGTCTGTACCGCCGATGCTTGGAGCTCAAGT
AGGGCTTCGTAAGTGAACAGGTTTTGGTGGGGTCGATAGAGGTTTTGTAA
ACCGCACATGCCAATCTAATGTGCATCTAGGTCTTAGGTGGTGTTAGTCG
CACCGAGTAGGACAGCTCATTGCTGGGGGGTGCCTACGGGCGTCGATGTT
TGTTAGCACATGAACGATGAGATTCATTTCAAATGAGTCGGCTTGCTTCA
CCTGCAGAAGGTTTCCTAATTTGTGCTTTCAGGGCCTGAGAGAGTTTAGT
ACAAGCAGAGGGCCTACGCAAGAACACCGCCTCTTCCTTCGTGTTGAAAA
GCACGATGACCACAACTGCATAGTCAGCCCCGGACACTAGCTTTTGTTGA
AAAGCACGATGACCACTAGACCACCAGTCAGCGGTCGTGTTCGGATTCTC
TTGTGCTAGTCCGTGGATCTCAC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9613:3894..7166-

>mRNA_Ecto-sp8_S_contig9613.31277.1 ID=mRNA_Ecto-sp8_S_contig9613.31277.1|Name=mRNA_Ecto-sp8_S_contig9613.31277.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=108bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9613:3894..7166- (Ectocarpus species8 EcLAC_412)
ATGTCGGAGGAAGGAGCGGATGCGGATGACGTCGACGTTATCAACATCAA
GCGGTGGAAGGTGGACTCGATAGCTGACTACTTGAACGAGCATTTGTACG
AGCAATAG
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