mRNA_Ecto-sp8_S_contig96121.31275.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig96121.31275.1
Unique NamemRNA_Ecto-sp8_S_contig96121.31275.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig96121.31275.1 vs. uniprot
Match: A0A6H5JGA1_9PHAE (Carboxypeptidase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JGA1_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 2.110e-34
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 1
Query:   49 DYTPEALADKVDWSTLPGAENLEVKDGFSMFSGYINVDAENGRNIFYWFMEAQENTEDAPVV 234
            DYTPEALADKVDWSTLPGAENLEVKDGFSMFSGYINVDAENGRNIFYWFMEAQEN EDAPV+
Sbjct:   26 DYTPEALADKVDWSTLPGAENLEVKDGFSMFSGYINVDAENGRNIFYWFMEAQENAEDAPVI 87          
BLAST of mRNA_Ecto-sp8_S_contig96121.31275.1 vs. uniprot
Match: A0A7S4QN09_9STRA (Carboxypeptidase n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QN09_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 9.530e-9
Identity = 30/61 (49.18%), Postives = 40/61 (65.57%), Query Frame = 1
Query:   52 YTPEALADKVDWSTLPGAENLEVKDGFSMFSGYINVDAENGRNIFYWFMEAQENTEDAPVV 234
            YT EALAD++  ++LPG   L    GF+ FSGY  V     RNIFYW++E+Q + E+ PVV
Sbjct:   77 YTSEALADQI--TSLPG---LNYNHGFNQFSGYFKVSEHYNRNIFYWYVESQNDPENDPVV 132          
BLAST of mRNA_Ecto-sp8_S_contig96121.31275.1 vs. uniprot
Match: A0A087SC47_AUXPR (Carboxypeptidase n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SC47_AUXPR)

HSP 1 Score: 57.8 bits (138), Expect = 6.180e-8
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 1
Query:   55 TPEALADKVDWSTLPGAENLEVKDGFSMFSGYINVDAENGRNIFYWFMEAQENTEDAPVV 234
            T EA ADKV  S+LPG  NL+  D F ++SGYI VDAE GR++FY F+E+Q++    P+V
Sbjct:   39 TKEAAADKV--SSLPGWGNLQ-DDEFDIYSGYITVDAEAGRSLFYVFVESQDDPAADPLV 95          
BLAST of mRNA_Ecto-sp8_S_contig96121.31275.1 vs. uniprot
Match: A0A1Q9CE03_SYMMI (Carboxypeptidase n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9CE03_SYMMI)

HSP 1 Score: 55.8 bits (133), Expect = 3.080e-7
Identity = 31/64 (48.44%), Postives = 40/64 (62.50%), Query Frame = 1
Query:   52 YTPEALADKVDWSTLPGAENLEVKDGFSMFSGYINVD---AENGRNIFYWFMEAQENTEDAPVV 234
            Y P AL D++  + LPGA  ++    F MFSGYI+V    A   R IFYWF+EAQ N  +APV+
Sbjct:   98 YGPAALQDEI--THLPGAPPVD----FRMFSGYIDVSPSWANGSRQIFYWFVEAQSNASEAPVI 155          
BLAST of mRNA_Ecto-sp8_S_contig96121.31275.1 vs. uniprot
Match: W7TR82_9STRA (Carboxypeptidase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TR82_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 7.610e-7
Identity = 30/64 (46.88%), Postives = 43/64 (67.19%), Query Frame = 1
Query:   43 DADYTPEALADKVDWSTLPGAENLEVKDGFSMFSGYINVDAENGRNIFYWFMEAQENTEDAPVV 234
            +A YT EALAD+V    LPG   L  K  F  F+GY+N+     +NIFYW++EA+E+ ++AP+V
Sbjct:  115 NASYTKEALADEV--LDLPG---LTEKVTFRQFAGYLNLKGTQ-KNIFYWYVEAEESPDEAPLV 172          
BLAST of mRNA_Ecto-sp8_S_contig96121.31275.1 vs. uniprot
Match: A0A2G9HWJ6_9LAMI (Carboxypeptidase n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9HWJ6_9LAMI)

HSP 1 Score: 53.9 bits (128), Expect = 1.400e-6
Identity = 33/87 (37.93%), Postives = 50/87 (57.47%), Query Frame = 1
Query:    1 WVFSLFLFV------YGPCADA---DYTPEALADKVDWSTLPGAENLEVKDGFSMFSGYINVDAENGRNIFYWFMEAQENTEDAPVV 234
            WVFSLFL        +  C+ +   D   + L D+V    LPG +N +V   F+ F+GY+ V+ E+GR +FYWF EA+E+    P++
Sbjct:    6 WVFSLFLICCILNLRFISCSTSFSPDPPNQQLLDRV--LNLPG-QNFDVS--FAHFAGYVTVNEESGRTLFYWFFEAEEDPSSKPLL 87          
BLAST of mRNA_Ecto-sp8_S_contig96121.31275.1 vs. uniprot
Match: A0A803MNX5_CHEQI (Carboxypeptidase n=3 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803MNX5_CHEQI)

HSP 1 Score: 53.5 bits (127), Expect = 1.920e-6
Identity = 30/82 (36.59%), Postives = 45/82 (54.88%), Query Frame = 1
Query:    1 WVFSLFLFVYGPCADADYTPEALA----DKVDWSTLPGAENLEVKDGFSMFSGYINVDAENGRNIFYWFMEAQENTEDAPVV 234
            W+ +  + V G  +    +PE +A    D+V    LPG   +    GF  ++GY+NV+A +GR +FYWF EA +N    PVV
Sbjct:   21 WLTTHVMIVSGSTSTLGLSPEVVAKQNADRV--VDLPGQPVV----GFKHYAGYVNVNASHGRELFYWFFEADQNPHHKPVV 96          
BLAST of mRNA_Ecto-sp8_S_contig96121.31275.1 vs. uniprot
Match: A0A6A4LTH1_9ERIC (Carboxypeptidase (Fragment) n=2 Tax=Rhododendron TaxID=4346 RepID=A0A6A4LTH1_9ERIC)

HSP 1 Score: 53.1 bits (126), Expect = 2.610e-6
Identity = 32/87 (36.78%), Postives = 50/87 (57.47%), Query Frame = 1
Query:    1 WVFSLFLFVY------GPCADA---DYTPEALADKVDWSTLPGAENLEVKDGFSMFSGYINVDAENGRNIFYWFMEAQENTEDAPVV 234
            WVF L ++++      G C+ +   D T + L D+V  S LPG +  +V   F+ +SGY+ V+ E GR +FYWF+EA +     P+V
Sbjct:    6 WVFVLCIYIFINNVYIGSCSSSFSSDPTAQQLLDRV--SELPG-QTFDVS--FAHYSGYVTVNEEFGRALFYWFVEAVDEPSSKPLV 87          
BLAST of mRNA_Ecto-sp8_S_contig96121.31275.1 vs. uniprot
Match: A0A8J4BMJ6_9CHLO (Carboxypeptidase (Fragment) n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BMJ6_9CHLO)

HSP 1 Score: 52.8 bits (125), Expect = 3.640e-6
Identity = 29/62 (46.77%), Postives = 38/62 (61.29%), Query Frame = 1
Query:   49 DYTPEALADKVDWSTLPGAENLEVKDGFSMFSGYINVDAENGRNIFYWFMEAQENTEDAPVV 234
            D TPEA ADK+   +LPG  N       S F GYI VDA  GR +FY+F+E++ +  + PVV
Sbjct:   49 DLTPEAAADKI--ISLPGFLNTLPS---SQFGGYITVDANRGRRLFYYFVESERDPVNDPVV 105          
BLAST of mRNA_Ecto-sp8_S_contig96121.31275.1 vs. uniprot
Match: A0A7R9ZL37_9STRA (Carboxypeptidase n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZL37_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 3.640e-6
Identity = 23/47 (48.94%), Postives = 33/47 (70.21%), Query Frame = 1
Query:   94 LPGAENLEVKDGFSMFSGYINVDAENGRNIFYWFMEAQENTEDAPVV 234
            LPG   L    GF+ +SGY+NVD ++GR IFYW++E+Q + E  P+V
Sbjct:  132 LPG---LGYDPGFNQYSGYLNVDEDHGRRIFYWYVESQSSPEHDPLV 175          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig96121.31275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JGA1_9PHAE2.110e-3496.77Carboxypeptidase n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
A0A7S4QN09_9STRA9.530e-949.18Carboxypeptidase n=3 Tax=Ditylum brightwellii TaxI... [more]
A0A087SC47_AUXPR6.180e-853.33Carboxypeptidase n=2 Tax=Auxenochlorella protothec... [more]
A0A1Q9CE03_SYMMI3.080e-748.44Carboxypeptidase n=3 Tax=Symbiodinium TaxID=2949 R... [more]
W7TR82_9STRA7.610e-746.88Carboxypeptidase n=2 Tax=Monodopsidaceae TaxID=425... [more]
A0A2G9HWJ6_9LAMI1.400e-637.93Carboxypeptidase n=1 Tax=Handroanthus impetiginosu... [more]
A0A803MNX5_CHEQI1.920e-636.59Carboxypeptidase n=3 Tax=Chenopodium quinoa TaxID=... [more]
A0A6A4LTH1_9ERIC2.610e-636.78Carboxypeptidase (Fragment) n=2 Tax=Rhododendron T... [more]
A0A8J4BMJ6_9CHLO3.640e-646.77Carboxypeptidase (Fragment) n=2 Tax=Volvox african... [more]
A0A7R9ZL37_9STRA3.640e-648.94Carboxypeptidase n=1 Tax=Craspedostauros australis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig96121contigEcto-sp8_S_contig96121:300..533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score73.6
Seed ortholog evalue4.7e-11
Seed eggNOG ortholog2880.D7FGS2
Model size234
KEGG rclassRC00597,RC00598,RC00784,RC02852
KEGG koko:K08249,ko:K13289,ko:K16296,ko:K16297
KEGG ReactionR01409,R02676,R02811
KEGG Pathwayko00460,ko01110,ko04142,ko04614,map00460,map01110,map04142,map04614
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0004180,GO:0004185,GO:0005575,GO:0005576,GO:0005615,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005911,GO:0006508,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008238,GO:0009056,GO:0009057,GO:0009505,GO:0009506,GO:0009719,GO:0009725,GO:0009741,GO:0009742,GO:0009755,GO:0009987,GO:0010033,GO:0014070,GO:0016787,GO:0017171,GO:0019538,GO:0023052,GO:0030054,GO:0030163,GO:0030312,GO:0032870,GO:0033993,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043401,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0048545,GO:0050789,GO:0050794,GO:0050896,GO:0051603,GO:0051716,GO:0055044,GO:0065007,GO:0070008,GO:0070011,GO:0070887,GO:0071310,GO:0071367,GO:0071383,GO:0071396,GO:0071407,GO:0071495,GO:0071704,GO:0071944,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:1901701
Exons1
EggNOG free text desc.PFAM Peptidase S10, serine carboxypeptidase
EggNOG OGsCOG2939@1,KOG1282@2759
EC3.4.16.5,4.1.2.11
Cds size234
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03110,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145324.2719817-CDS-Ecto-sp8_S_contig96121:299..5331681145324.2719817-CDS-Ecto-sp8_S_contig96121:299..533Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig96121 300..533 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig96121.31275.1prot_Ecto-sp8_S_contig96121.31275.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig96121 300..533 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig96121.31275.1

>prot_Ecto-sp8_S_contig96121.31275.1 ID=prot_Ecto-sp8_S_contig96121.31275.1|Name=mRNA_Ecto-sp8_S_contig96121.31275.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=78bp
WVFSLFLFVYGPCADADYTPEALADKVDWSTLPGAENLEVKDGFSMFSGY
INVDAENGRNIFYWFMEAQENTEDAPVV
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mRNA from alignment at Ecto-sp8_S_contig96121:300..533+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig96121.31275.1 ID=mRNA_Ecto-sp8_S_contig96121.31275.1|Name=mRNA_Ecto-sp8_S_contig96121.31275.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=234bp|location=Sequence derived from alignment at Ecto-sp8_S_contig96121:300..533+ (Ectocarpus species8 EcLAC_412)
TGGGTTTTCTCTCTTTTTCTCTTTGTTTATGGTCCTTGCGCCGACGCAGA CTACACGCCCGAGGCGCTGGCTGACAAAGTTGATTGGTCGACTCTTCCCG GGGCGGAAAACCTCGAGGTCAAAGACGGTTTCAGCATGTTTTCCGGTTAC ATCAATGTGGACGCGGAGAACGGCCGCAACATTTTCTACTGGTTCATGGA GGCCCAGGAGAACACGGAAGACGCACCCGTGGTC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig96121:300..533+

>mRNA_Ecto-sp8_S_contig96121.31275.1 ID=mRNA_Ecto-sp8_S_contig96121.31275.1|Name=mRNA_Ecto-sp8_S_contig96121.31275.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp8_S_contig96121:300..533+ (Ectocarpus species8 EcLAC_412)
TGGGTTTTCTCTCTTTTTCTCTTTGTTTATGGTCCTTGCGCCGACGCAGA
CTACACGCCCGAGGCGCTGGCTGACAAAGTTGATTGGTCGACTCTTCCCG
GGGCGGAAAACCTCGAGGTCAAAGACGGTTTCAGCATGTTTTCCGGTTAC
ATCAATGTGGACGCGGAGAACGGCCGCAACATTTTCTACTGGTTCATGGA
GGCCCAGGAGAACACGGAAGACGCACCCGTGGTC
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