mRNA_Ecto-sp8_S_contig96.31254.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig96.31254.1
Unique NamemRNA_Ecto-sp8_S_contig96.31254.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig96.31254.1 vs. uniprot
Match: D7FJE9_ECTSI (PTIF2, plastid translation intiation factor 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJE9_ECTSI)

HSP 1 Score: 237 bits (604), Expect = 2.130e-70
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 1 
Query:   34 MAAAWRGTVFTLLTAACASGFVQPGCPGALAGREWARGGAKSCARPVCSSVLRMSDHTEDRPRTQVFESSGGRDGEEGSAASKSADAPYVLTKPMDLVRVRGFGSGSSAGYFPGRDGGG 390
            MAAAWRGTVFTLLTAACASGFVQPGCPGALAGREWARGGAKSCARPVCSSVLRMSDHTEDRPRTQVFESSGG DGEEGSAASKSADAPYVLTKPMDLVRVRGFGSGSSAGYFPGRDGGG
Sbjct:    1 MAAAWRGTVFTLLTAACASGFVQPGCPGALAGREWARGGAKSCARPVCSSVLRMSDHTEDRPRTQVFESSGGGDGEEGSAASKSADAPYVLTKPMDLVRVRGFGSGSSAGYFPGRDGGG 119
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig96.31254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJE9_ECTSI2.130e-7099.16PTIF2, plastid translation intiation factor 2 n=2 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig96contigEcto-sp8_S_contig96:29520..30913 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score237.7
Seed ortholog evalue3.1e-60
Seed eggNOG ortholog2880.D7FJE9
Model size390
KEGG koko:K02519
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
Exons3
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG0532@1,KOG1145@2759
Cds size390
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145322.702521-CDS-Ecto-sp8_S_contig96:29519..297341681145322.702521-CDS-Ecto-sp8_S_contig96:29519..29734Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig96 29520..29734 +
1681145322.7185674-CDS-Ecto-sp8_S_contig96:30288..303541681145322.7185674-CDS-Ecto-sp8_S_contig96:30288..30354Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig96 30289..30354 +
1681145322.729387-CDS-Ecto-sp8_S_contig96:30804..309131681145322.729387-CDS-Ecto-sp8_S_contig96:30804..30913Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig96 30805..30913 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig96.31254.1prot_Ecto-sp8_S_contig96.31254.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig96 29520..30913 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig96.31254.1

>prot_Ecto-sp8_S_contig96.31254.1 ID=prot_Ecto-sp8_S_contig96.31254.1|Name=mRNA_Ecto-sp8_S_contig96.31254.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=130bp
TAARSFCTALDMAAAWRGTVFTLLTAACASGFVQPGCPGALAGREWARGG
AKSCARPVCSSVLRMSDHTEDRPRTQVFESSGGRDGEEGSAASKSADAPY
VLTKPMDLVRVRGFGSGSSAGYFPGRDGGG
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mRNA from alignment at Ecto-sp8_S_contig96:29520..30913+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig96.31254.1 ID=mRNA_Ecto-sp8_S_contig96.31254.1|Name=mRNA_Ecto-sp8_S_contig96.31254.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1394bp|location=Sequence derived from alignment at Ecto-sp8_S_contig96:29520..30913+ (Ectocarpus species8 EcLAC_412)
ACAGCGGCGCGGTCGTTTTGCACCGCTCTCGACATGGCTGCCGCGTGGCG
TGGGACGGTCTTTACCCTCCTCACAGCGGCTTGCGCATCAGGCTTCGTCC
AGCCAGGATGCCCAGGAGCGCTCGCAGGTAGAGAGTGGGCCAGGGGCGGG
GCCAAGAGCTGCGCAAGACCAGTGTGCTCGAGCGTGCTTCGCATGTCGGA
TCACACGGAGGACAGGTGCGTTGCGCGCGCCGGCCGCTGGTGTGCACAAA
AAATATGAAAACTGCTGCTGTGCTGTCGAGGCGAGGAAAGTTGAACAAAC
GTATGCAAGCAACGCCCGGTCGGTGCGTGAGCGGTTGTCCAGCGACTTCC
CAACACATGCGAGAGTAGGCTGCTGCAGCTCGAGTGCGCTGACTGCCGTT
GGGTGCGTGTGCAATCGATCACTGCTGCAATGGCGGAGCAAAGGGCCCTG
ACGAGAGGAACGTTCAGTCGGCTCTTTTCAGAGTTGATGGCTGATGGTCA
AGGAGCGACGCGTTCATGTGCACCGAGCTTTGTCGCGGTTTTTGTCATGT
TGCACATTCTCAGAGCACCAAACAGCAGCATTGAGTCAGTCAGGCGAACT
GATCTCAATAGGCAGCCACAGCAGTAACCCTCCCCCGTACCCCTGACCAC
TCCGCTCTTCTATTGTGTGCATGCATGTGGCGTGTCTTGAGGATTATCAT
GTACCCCGTTTACAGAGGTATCACTAGACTACGTTTTTGCCTCTCCCTTG
ACCTCCTCGTGCACAACAGGCCAAGAACGCAGGTGTTTGAGAGCAGCGGC
GGCAGGGATGGCGAAGAGGGTTCCGCAGCATCGAAGTGAGCAGCAGCAGC
GGCAGCAGGCATTTAGAAAGAGAGGCTCTTGGTGTTTGTCGTTATCATGA
GTGCACTTATTGCTTATCGCTAGCGCGCGGTGTTGGGCAACCTCTACCCA
ATGAAAGTCCCCCGTGTTCCGCCGGCGTCCCTCCGGTAGCCGGTACACCT
GATGTCGCTGTCGCTGTCGGTGTGGTGCGCTTGGGCTCGCGTGCACGCGT
TCGATCGAGAGCGCGTGTACAACGCTGTCGTGTGTAGCAAAAAGAACCAC
CAGTCTATTTTATTGAACACGTACGGATGTCGAGCCAACACCAGCAGTAC
TTCCGCGGTGTACATATTTTATCGCGTGCAGCAGTTGTTGCCACATGTCG
CTCGACTGCCTCAGCACGAGAGTATGACGACGAAGGCGGGCAATGAAGTG
ACACAATAATACCCTTAACCCCCCCCCATGCTCAGGTCGGCTGACGCCCC
ATATGTACTGACGAAACCGATGGACCTGGTACGAGTCCGGGGTTTCGGCA
GCGGTTCGTCGGCGGGTTACTTCCCCGGGAGGGATGGCGGCGGG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig96:29520..30913+

>mRNA_Ecto-sp8_S_contig96.31254.1 ID=mRNA_Ecto-sp8_S_contig96.31254.1|Name=mRNA_Ecto-sp8_S_contig96.31254.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=390bp|location=Sequence derived from alignment at Ecto-sp8_S_contig96:29520..30913+ (Ectocarpus species8 EcLAC_412)
ACAGCGGCGCGGTCGTTTTGCACCGCTCTCGACATGGCTGCCGCGTGGCG
TGGGACGGTCTTTACCCTCCTCACAGCGGCTTGCGCATCAGGCTTCGTCC
AGCCAGGATGCCCAGGAGCGCTCGCAGGTAGAGAGTGGGCCAGGGGCGGG
GCCAAGAGCTGCGCAAGACCAGTGTGCTCGAGCGTGCTTCGCATGTCGGA
TCACACGGAGGACAGGCCAAGAACGCAGGTGTTTGAGAGCAGCGGCGGCA
GGGATGGCGAAGAGGGTTCCGCAGCATCGAAGTCGGCTGACGCCCCATAT
GTACTGACGAAACCGATGGACCTGGTACGAGTCCGGGGTTTCGGCAGCGG
TTCGTCGGCGGGTTACTTCCCCGGGAGGGATGGCGGCGGG
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