mRNA_Ecto-sp8_S_contig95906.31238.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp8_S_contig95906.31238.1
Unique Name	mRNA_Ecto-sp8_S_contig95906.31238.1
Type	mRNA
Organism	Ectocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)

Homology

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BLAST of mRNA_Ecto-sp8_S_contig95906.31238.1 vs. uniprot
Match: A0A6H5KGQ4_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGQ4_9PHAE)

HSP 1 Score: 304 bits (778), Expect = 6.630e-98
Identity = 153/166 (92.17%), Postives = 156/166 (93.98%), Query Frame = 1

Query:    1 RLGSGSFGEVTTAKWNGSHVAVKYLREYDNRDLVRAIRKEIRTHVSLRFDHVVQLYAASTIAPNLCMVMEYASEGSLRQHLHSTRKPLAHPLQAAFLFDIARGLMFLHKKGILHRDLKSANVLVFANRRLKLCDFGLSKVMAESSSRSKRGPVGTTPWMSPEEING 498
            RLGSGSFG VTTAKWNGS VAVKYLRE DNRDL+RAIRKEIRTH SLRFDHVVQLYAASTIAPNLCMVMEYASEGSL Q+LHSTRKPLAHPLQ AFLFDIARGLMFLH KGILHRDLKSANVLVFANRRLKLCDFGLSKV+ ESSSRSKRGPVGTT WMSPE ING
Sbjct:  189 RLGSGSFGVVTTAKWNGSDVAVKYLREDDNRDLIRAIRKEIRTHASLRFDHVVQLYAASTIAPNLCMVMEYASEGSLWQYLHSTRKPLAHPLQTAFLFDIARGLMFLHNKGILHRDLKSANVLVFANRRLKLCDFGLSKVIEESSSRSKRGPVGTTAWMSPEAING 354

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BLAST of mRNA_Ecto-sp8_S_contig95906.31238.1 vs. uniprot
Match: A0A6H5KS20_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS20_9PHAE)

HSP 1 Score: 308 bits (790), Expect = 9.750e-98
Identity = 154/166 (92.77%), Postives = 158/166 (95.18%), Query Frame = 1

Query:    1 RLGSGSFGEVTTAKWNGSHVAVKYLREYDNRDLVRAIRKEIRTHVSLRFDHVVQLYAASTIAPNLCMVMEYASEGSLRQHLHSTRKPLAHPLQAAFLFDIARGLMFLHKKGILHRDLKSANVLVFANRRLKLCDFGLSKVMAESSSRSKRGPVGTTPWMSPEEING 498
            RLGSGSFGEV TA+WNGS VAVK+LRE DNRDL+RAIRKEIRTH SLRFDHVVQLYAASTIAPNLCMVMEYASEGSL QHLHSTRKPLAHPLQAAFLFDIARGLMFLH KGILHRDLKSANVLVFANRRLKLCDFGLSKV+ ESSSRSKRGPVGTTPWMSPE ING
Sbjct:  243 RLGSGSFGEVKTARWNGSEVAVKHLREDDNRDLIRAIRKEIRTHASLRFDHVVQLYAASTIAPNLCMVMEYASEGSLWQHLHSTRKPLAHPLQAAFLFDIARGLMFLHNKGILHRDLKSANVLVFANRRLKLCDFGLSKVIEESSSRSKRGPVGTTPWMSPEAING 408

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BLAST of mRNA_Ecto-sp8_S_contig95906.31238.1 vs. uniprot
Match: D7G890_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G890_ECTSI)

HSP 1 Score: 246 bits (629), Expect = 1.950e-75
Identity = 125/166 (75.30%), Postives = 140/166 (84.34%), Query Frame = 1

Query:    1 RLGSGSFGEVTTAKWNGSHVAVKYLREYD-NRDLVRAIRKEIRTHVSLRFDHVVQLYAASTIAPNLCMVMEYASEGSLRQHLHSTRKPLAHPLQAAFLFDIARGLMFLHKKGILHRDLKSANVLVFANRRLKLCDFGLSKVMAESSSRSKRGPVGTTPWMSPEEIN 495
            RLGSG FGEV TAKWNGSHVAVK L   D +RD VR +RKEIR H +LRFDHVVQLYAASTI P LC+V+E AS GSLR++LHS+ +PLAH LQ AFL+DIARG+ FLHKKGILHRDLKSANVL+FAN  LKLCDFGLSK+  ESSSRSKRG VGT  WMSPEE++
Sbjct:  184 RLGSGGFGEVCTAKWNGSHVAVKRLLAGDLHRDDVRTLRKEIRIHSNLRFDHVVQLYAASTIPPRLCLVVELASRGSLRENLHSSSEPLAHALQTAFLYDIARGMSFLHKKGILHRDLKSANVLMFANGHLKLCDFGLSKIKTESSSRSKRGAVGTAQWMSPEEMD 349

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BLAST of mRNA_Ecto-sp8_S_contig95906.31238.1 vs. uniprot
Match: D7FHK4_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHK4_ECTSI)

HSP 1 Score: 219 bits (559), Expect = 4.170e-70
Identity = 114/155 (73.55%), Postives = 129/155 (83.23%), Query Frame = 1

Query:    1 RLGSGSFGEVTTAKWNGSHVAVK-YLREYDNRDLVRAIRKEIRTHVSLRFDHVVQLYAASTIAPNLCMVMEYASEGSLRQHLHSTRKPLAHPLQAAFLFDIARGLMFLHKKGILHRDLKSANVLVFANRRLKLCDFGLSKVMAESSSRSKRGPVG 462
            R GSG  GEV T KWNGS VAVK  L +  +RD VRA+RKE+R H +LRFDHVVQLYAASTI P+LC+V+E AS GSLRQ+L ST +PLAH LQ AFLFDIARG+ FL+KKG LHRDLKSANVL+FAN RLKLCDFGLSK+MAESSSRS +G VG
Sbjct:   53 RFGSGGVGEVRTVKWNGSDVAVKRLLADGLDRDDVRALRKEVRIHANLRFDHVVQLYAASTIPPHLCLVVELASGGSLRQYLRSTNEPLAHALQTAFLFDIARGMWFLNKKGTLHRDLKSANVLIFANGRLKLCDFGLSKIMAESSSRSIQGAVG 207

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BLAST of mRNA_Ecto-sp8_S_contig95906.31238.1 vs. uniprot
Match: D8LQ15_ECTSI (Kinesin light chain-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ15_ECTSI)

HSP 1 Score: 227 bits (579), Expect = 8.790e-67
Identity = 117/165 (70.91%), Postives = 133/165 (80.61%), Query Frame = 1

Query:    4 LGSGSFGEVTTAKWNGSHVAVKYLREYD-NRDLVRAIRKEIRTHVSLRFDHVVQLYAASTIAPNLCMVMEYASEGSLRQHLHSTRKPLAHPLQAAFLFDIARGLMFLHKKGILHRDLKSANVLVFANRRLKLCDFGLSKVMAESSSRSKRGPVGTTPWMSPEEIN 495
            LGSG FGEV TAKWNG+ VAVK+L      RD VR +RKEIR H SL FD V  LYAASTIAP+LC+V+E AS GSL+Q+LHS  +PLAH LQ AFL+D+ARG+ FLH KGILHRDLKSANVL+FAN RLKLCDFGLSKV  + SSRS RG VGTT WMSPEE++
Sbjct:  185 LGSGGFGEVRTAKWNGADVAVKHLLASGIQRDCVRDLRKEIRLHSSLSFDFVAPLYAASTIAPHLCLVVELASGGSLQQYLHSASEPLAHALQTAFLYDVARGMAFLHVKGILHRDLKSANVLMFANGRLKLCDFGLSKVKTDLSSRSTRGAVGTTQWMSPEEMD 349

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BLAST of mRNA_Ecto-sp8_S_contig95906.31238.1 vs. uniprot
Match: A0A6H5JLJ5_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JLJ5_9PHAE)

HSP 1 Score: 222 bits (565), Expect = 1.830e-65
Identity = 113/165 (68.48%), Postives = 132/165 (80.00%), Query Frame = 1

Query:    4 LGSGSFGEVTTAKWNGSHVAVKYLREYD-NRDLVRAIRKEIRTHVSLRFDHVVQLYAASTIAPNLCMVMEYASEGSLRQHLHSTRKPLAHPLQAAFLFDIARGLMFLHKKGILHRDLKSANVLVFANRRLKLCDFGLSKVMAESSSRSKRGPVGTTPWMSPEEIN 495
            LGSG FGEV TAKWNG+ VAVK+L      RD +R++RKEIR H SL F+ V  LYAASTIAP+LC+V+E AS GSL+ +L+ST  PLAH LQ AFL+D+ARG+ FLH KGILHRDLKSANVL+FAN RLKLCDFGLSKV  + SSRS  G VGTT WMSPEE++
Sbjct:  185 LGSGGFGEVRTAKWNGADVAVKHLLTGGLQRDCIRSLRKEIRLHSSLHFEFVAALYAASTIAPHLCLVVELASGGSLQHYLYSTTVPLAHALQTAFLYDVARGMSFLHAKGILHRDLKSANVLMFANSRLKLCDFGLSKVKTDLSSRSTHGAVGTTQWMSPEEMD 349

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BLAST of mRNA_Ecto-sp8_S_contig95906.31238.1 vs. uniprot
Match: A0A6H5JY67_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY67_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 2.930e-61
Identity = 111/165 (67.27%), Postives = 126/165 (76.36%), Query Frame = 1

Query:    4 LGSGSFGEVTTAKWNGSHVAVKYLREYD-NRDLVRAIRKEIRTHVSLRFDHVVQLYAASTIAPNLCMVMEYASEGSLRQHLHSTRKPLAHPLQAAFLFDIARGLMFLHKKGILHRDLKSANVLVFANRRLKLCDFGLSKVMAESSSRSKRGPVGTTPWMSPEEIN 495
            LG G FGEV TAKW G+ VAVK+L     +RD VR +RKEIR H SL FD V  LYAASTI P+LC+V+E AS GSL+Q+L S   PL H LQAAFL+D+ARG+ FLH KGILHRDLKSANVL+F N RLK+CDFGLSKV    SSR  RG VGTT WMSPEE+N
Sbjct:  185 LGWGGFGEVRTAKWKGADVAVKHLMASGIHRDTVRDLRKEIRLHSSLSFDFVTPLYAASTIIPHLCLVVELASGGSLQQYLRSASDPLGHALQAAFLYDVARGMTFLHDKGILHRDLKSANVLMFTNGRLKICDFGLSKVKTYLSSRPTRGAVGTTQWMSPEEMN 349

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BLAST of mRNA_Ecto-sp8_S_contig95906.31238.1 vs. uniprot
Match: D7G887_ECTSI (Protein kinase, TKL group n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G887_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 1.890e-41
Identity = 73/94 (77.66%), Postives = 83/94 (88.30%), Query Frame = 1

Query:  214 ASEGSLRQHLHSTRKPLAHPLQAAFLFDIARGLMFLHKKGILHRDLKSANVLVFANRRLKLCDFGLSKVMAESSSRSKRGPVGTTPWMSPEEIN 495
            AS GSLR++LHS+ +PLAH LQ AFL+DIARG+ FLHKKGILHRDLKSANVL+FAN RLKLCDFGLSK+  ESSSRSKRG VGT  WMSPEE++
Sbjct:  206 ASRGSLRENLHSSSEPLAHALQTAFLYDIARGMSFLHKKGILHRDLKSANVLMFANGRLKLCDFGLSKIKTESSSRSKRGAVGTAQWMSPEEMD 299

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BLAST of mRNA_Ecto-sp8_S_contig95906.31238.1 vs. uniprot
Match: A0A2U7UFM8_9VIRU (Serine/threonine protein kinase n=1 Tax=Pandoravirus macleodensis TaxID=2107707 RepID=A0A2U7UFM8_9VIRU)

HSP 1 Score: 129 bits (323), Expect = 1.930e-31
Identity = 70/166 (42.17%), Postives = 102/166 (61.45%), Query Frame = 1

Query:    4 LGSGSFGEVTTAKWNGSHVAVKYLREYD-NRDLVRAIRKEIRTHVSLRFDHVVQLYAASTIAPNLCMVMEYASEGSLRQHLHSTRKP-LAHPLQAAFLFDIARGLMFLHKKGILHRDLKSANVLVFANRRLKLCDFGLSKVMAESSSRSKRGPVGTTPWMSPEEIN 495
            +GSG FGEV  A W G+ VAVK +      R++ R   +E+R   +LR  +VV   AA T  PN+C+VMEY + GSL + LH+   P L   L+A   +  ++GL FLH  GI+HRD+KS N+L+     +K+ DFGL+K  A+ +  +  GP+G+  WM+PE +N
Sbjct:  833 VGSGGFGEVRRAMWKGTDVAVKVMSGVKITREMERNFCEEVRVMTALRHPNVVLFMAACTKPPNMCIVMEYMALGSLYELLHNELIPELPFVLKAKMAYQASKGLYFLHSSGIVHRDVKSLNLLLDNKWNVKVSDFGLTKFRADLADDAGAGPIGSVHWMAPEVLN 998

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BLAST of mRNA_Ecto-sp8_S_contig95906.31238.1 vs. uniprot
Match: L8HCL1_ACACA (Guanylate cyclase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HCL1_ACACA)

HSP 1 Score: 128 bits (321), Expect = 3.560e-31
Identity = 68/166 (40.96%), Postives = 104/166 (62.65%), Query Frame = 1

Query:    4 LGSGSFGEVTTAKWNGSHVAVKYLR-EYDNRDLVRAIRKEIRTHVSLRFDHVVQLYAASTIAPNLCMVMEYASEGSLRQHLHSTRKP-LAHPLQAAFLFDIARGLMFLHKKGILHRDLKSANVLVFANRRLKLCDFGLSKVMAESSSRSKRGPVGTTPWMSPEEIN 495
            LG+G FGEV  A W G+ VAVK +  +  ++D+ ++ + E+R   +LR  +VV   AAST AP +C+VME+ S GSL + LH+   P L   L+A   +  ++G+ FLH  GI+HRDLKS N+L+ A   +K+ DFGL+K   +  +++ R   G+  W +PE +N
Sbjct:  730 LGTGGFGEVYRATWKGTEVAVKVMASDRISKDMEKSFKDEVRVMTALRHPNVVLFMAASTKAPKMCIVMEFMSLGSLYELLHNELIPELPFALKAKMAYQASKGMHFLHSSGIVHRDLKSLNLLLDAKWNVKVSDFGLTKFKEDVKNKTSRDVAGSVHWTAPEVLN 895

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp8_S_contig95906.31238.1 vs. uniprot

BLAST of mRNA_Ecto-sp8_S_contig95906.31238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KGQ4_9PHAE	6.630e-98	92.17	Protein kinase domain-containing protein n=1 Tax=E...	[more]
A0A6H5KS20_9PHAE	9.750e-98	92.77	Protein kinase domain-containing protein n=1 Tax=E...	[more]
D7G890_ECTSI	1.950e-75	75.30	Protein kinase domain-containing protein n=1 Tax=E...	[more]
D7FHK4_ECTSI	4.170e-70	73.55	Protein kinase domain-containing protein n=1 Tax=E...	[more]
D8LQ15_ECTSI	8.790e-67	70.91	Kinesin light chain-like protein n=1 Tax=Ectocarpu...	[more]
A0A6H5JLJ5_9PHAE	1.830e-65	68.48	Protein kinase domain-containing protein n=2 Tax=E...	[more]
A0A6H5JY67_9PHAE	2.930e-61	67.27	Protein kinase domain-containing protein n=1 Tax=E...	[more]
D7G887_ECTSI	1.890e-41	77.66	Protein kinase, TKL group n=1 Tax=Ectocarpus silic...	[more]
A0A2U7UFM8_9VIRU	1.930e-31	42.17	Serine/threonine protein kinase n=1 Tax=Pandoravir...	[more]
L8HCL1_ACACA	3.560e-31	40.96	Guanylate cyclase n=1 Tax=Acanthamoeba castellanii...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp8_S_contig95906	contig	Ecto-sp8_S_contig95906:12..509 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species8 EcLAC_412 OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	0
Seed ortholog score	247.7
Seed ortholog evalue	3.9e-63
Seed eggNOG ortholog	2880.D7G890
Model size	498
Hectar predicted targeting category	other localisation
Exons	1
EggNOG free text desc.	protein kinase activity
EggNOG OGs	COG0515@1,KOG0192@2759
Cds size	498
COG Functional cat.	KLT
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681145321.3512921-CDS-Ecto-sp8_S_contig95906:11..509	1681145321.3512921-CDS-Ecto-sp8_S_contig95906:11..509	Ectocarpus species8 EcLAC_412	CDS	Ecto-sp8_S_contig95906 12..509 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp8_S_contig95906.31238.1	prot_Ecto-sp8_S_contig95906.31238.1	Ectocarpus species8 EcLAC_412	polypeptide	Ecto-sp8_S_contig95906 12..509 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp8_S_contig95906:12..509-
coding sequence from alignment at Ecto-sp8_S_contig95906:12..509-

protein sequence of mRNA_Ecto-sp8_S_contig95906.31238.1

>prot_Ecto-sp8_S_contig95906.31238.1 ID=prot_Ecto-sp8_S_contig95906.31238.1|Name=mRNA_Ecto-sp8_S_contig95906.31238.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=166bp
RLGSGSFGEVTTAKWNGSHVAVKYLREYDNRDLVRAIRKEIRTHVSLRFD
HVVQLYAASTIAPNLCMVMEYASEGSLRQHLHSTRKPLAHPLQAAFLFDI
ARGLMFLHKKGILHRDLKSANVLVFANRRLKLCDFGLSKVMAESSSRSKR
GPVGTTPWMSPEEING

mRNA from alignment at Ecto-sp8_S_contig95906:12..509-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp8_S_contig95906.31238.1 ID=mRNA_Ecto-sp8_S_contig95906.31238.1|Name=mRNA_Ecto-sp8_S_contig95906.31238.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=498bp|location=Sequence derived from alignment at Ecto-sp8_S_contig95906:12..509- (Ectocarpus species8 EcLAC_412)
CGCCTTGGGTCGGGGAGTTTTGGTGAAGTAACAACGGCAAAGTGGAACGG
ATCACATGTGGCGGTGAAGTACCTCCGGGAATATGATAATCGCGACCTAG
TTCGCGCCATCAGGAAAGAAATTCGCACTCACGTCAGTCTTCGCTTCGAC
CATGTGGTCCAGCTCTACGCGGCTTCTACTATAGCTCCAAACCTTTGCAT
GGTTATGGAGTACGCCAGCGAGGGCTCGCTGCGGCAGCACTTGCACTCAA
CCAGGAAGCCACTCGCACACCCGCTGCAGGCGGCATTTCTGTTTGATATT
GCCAGGGGTTTGATGTTCTTGCACAAGAAGGGCATTCTGCATCGCGACCT
CAAATCGGCGAATGTGCTGGTGTTCGCCAATCGCCGCCTGAAACTTTGCG
ACTTTGGATTGTCCAAAGTCATGGCAGAATCCTCAAGCAGGTCCAAAAGG
GGGCCTGTAGGGACCACACCATGGATGTCTCCGGAGGAGATCAACGGC

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig95906:12..509-

>mRNA_Ecto-sp8_S_contig95906.31238.1 ID=mRNA_Ecto-sp8_S_contig95906.31238.1|Name=mRNA_Ecto-sp8_S_contig95906.31238.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=498bp|location=Sequence derived from alignment at Ecto-sp8_S_contig95906:12..509- (Ectocarpus species8 EcLAC_412)
CGCCTTGGGTCGGGGAGTTTTGGTGAAGTAACAACGGCAAAGTGGAACGG
ATCACATGTGGCGGTGAAGTACCTCCGGGAATATGATAATCGCGACCTAG
TTCGCGCCATCAGGAAAGAAATTCGCACTCACGTCAGTCTTCGCTTCGAC
CATGTGGTCCAGCTCTACGCGGCTTCTACTATAGCTCCAAACCTTTGCAT
GGTTATGGAGTACGCCAGCGAGGGCTCGCTGCGGCAGCACTTGCACTCAA
CCAGGAAGCCACTCGCACACCCGCTGCAGGCGGCATTTCTGTTTGATATT
GCCAGGGGTTTGATGTTCTTGCACAAGAAGGGCATTCTGCATCGCGACCT
CAAATCGGCGAATGTGCTGGTGTTCGCCAATCGCCGCCTGAAACTTTGCG
ACTTTGGATTGTCCAAAGTCATGGCAGAATCCTCAAGCAGGTCCAAAAGG
GGGCCTGTAGGGACCACACCATGGATGTCTCCGGAGGAGATCAACGGC